Works by Vejnar, Charles

Results: 13

linc-mipep and linc-wrb encode micropeptides that regulate chromatin accessibility in vertebrate-specific neural cells.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.82249

By:

Tornini, Valerie A.;
Liyun Miao;
Ho-Joon Lee;
Gerson, Timothy;
Dube, Sarah E.;
Schmidt, Valeria;
Kroll, François;
Yin Tang;
Du, Katherine;
Kuchroo, Manik;
Vejnar, Charles E.;
Bazzini, Ariel Alejandro;
Krishnaswamy, Smita;
Rihel, Jason;
Giraldez, Antonio J.

Publication type:

Article

NaP-TRAP reveals the regulatory grammar in 5'UTR-mediated translation regulation during zebrafish development.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-55274-y

By:

Strayer, Ethan C.;
Krishna, Srikar;
Lee, Haejeong;
Vejnar, Charles;
Neuenkirchen, Nils;
Gupta, Amit;
Beaudoin, Jean-Denis;
Giraldez, Antonio J.

Publication type:

Article

LabxDB: versatile databases for genomic sequencing and lab management.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4530, doi. 10.1093/bioinformatics/btaa557

By:

Vejnar, Charles E;
Giraldez, Antonio J

Publication type:

Article

miRmap web: comprehensive microRNA target prediction online.

Published in:

Nucleic Acids Research, 2013, v. 41, p. W165, doi. 10.1093/nar/gkt430

By:

Vejnar, Charles E.;
Blum, Matthias;
Zdobnov, Evgeny M.

Publication type:

Article

miRmap: Comprehensive prediction of microRNA target repression strength.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11673, doi. 10.1093/nar/gks901

By:

Vejnar, Charles E.;
Zdobnov, Evgeny M.

Publication type:

Article

miROrtho: computational survey of microRNA genes.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D111, doi. 10.1093/nar/gkn707

By:

Gerlach, Daniel;
Kriventseva, Evgenia V.;
Rahman, Nazim;
Vejnar, Charles E.;
Zdobnov, Evgeny M.

Publication type:

Article

Genome editing in animals with minimal PAM CRISPR-Cas9 enzymes.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30228-4

By:

Vicencio, Jeremy;
Sánchez-Bolaños, Carlos;
Moreno-Sánchez, Ismael;
Brena, David;
Vejnar, Charles E.;
Kukhtar, Dmytro;
Ruiz-López, Miguel;
Cots-Ponjoan, Mariona;
Rubio, Alejandro;
Melero, Natalia Rodrigo;
Crespo-Cuadrado, Jesús;
Carolis, Carlo;
Pérez-Pulido, Antonio J.;
Giráldez, Antonio J.;
Kleinstiver, Benjamin P.;
Cerón, Julián;
Moreno-Mateos, Miguel A.

Publication type:

Article

Bicc1 and Dicer regulate left-right patterning through post-transcriptional control of the Nodal inhibitor Dand5.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25464-z

By:

Maerker, Markus;
Getwan, Maike;
Dowdle, Megan E.;
McSheene, Jason C.;
Gonzalez, Vanessa;
Pelliccia, José L.;
Hamilton, Danielle S.;
Yartseva, Valeria;
Vejnar, Charles;
Tingler, Melanie;
Minegishi, Katsura;
Vick, Philipp;
Giraldez, Antonio J.;
Hamada, Hiroshi;
Burdine, Rebecca D.;
Sheets, Michael D.;
Blum, Martin;
Schweickert, Axel

Publication type:

Article

Codon identity regulates mRNA stability and translation efficiency during the maternal-to-zygotic transition.

Published in:

EMBO Journal, 2016, v. 35, n. 19, p. 2087, doi. 10.15252/embj.201694699

By:

Bazzini, Ariel A;
Viso, Florencia;
Moreno‐Mateos, Miguel A;
Johnstone, Timothy G;
Vejnar, Charles E;
Qin, Yidan;
Yao, Jun;
Khokha, Mustafa K;
Giraldez, Antonio J

Publication type:

Article

Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.

Published in:

EMBO Journal, 2014, v. 33, n. 9, p. 981, doi. 10.1002/embj.201488411

By:

Bazzini, Ariel A;
Johnstone, Timothy G;
Christiano, Romain;
Mackowiak, Sebastian D;
Obermayer, Benedikt;
Fleming, Elizabeth S;
Vejnar, Charles E;
Lee, Miler T;
Rajewsky, Nikolaus;
Walther, Tobias C;
Giraldez, Antonio J

Publication type:

Article

CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01836-2

By:

Moreno-Mateos, Miguel A.;
Fernandez, Juan P.;
Rouet, Romain;
Vejnar, Charles E.;
Lane, Maura A.;
Mis, Emily;
Khokha, Mustafa K.;
Doudna, Jennifer A.;
Giraldez, Antonio J.

Publication type:

Article

CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo.

Published in:

Nature Methods, 2015, v. 12, n. 10, p. 982, doi. 10.1038/nmeth.3543

By:

Moreno-Mateos, Miguel A;
Vejnar, Charles E;
Beaudoin, Jean-Denis;
Fernandez, Juan P;
Mis, Emily K;
Khokha, Mustafa K;
Giraldez, Antonio J

Publication type:

Article

Maternal regulation of the vertebrate oocyte-to-embryo transition.

Published in:

PLoS Genetics, 2024, v. 20, n. 7, p. 1, doi. 10.1371/journal.pgen.1011343

By:

Fuentes, Ricardo;
Marlow, Florence L.;
Abrams, Elliott W.;
Zhang, Hong;
Kobayashi, Manami;
Gupta, Tripti;
Kapp, Lee D.;
DiNardo, Zachary;
Heller, Ronald;
Cisternas, Ruth;
García-Castro, Priscila;
Segovia-Miranda, Fabián;
Montecinos-Franjola, Felipe;
Vought, William;
Vejnar, Charles E.;
Giraldez, Antonio J.;
Mullins, Mary C.

Publication type:

Article