Works matching AU Veening, Jan-Willem

Results: 63

CRISPRi screen identifies FprB as a synergistic target for gallium therapy in Pseudomonas aeruginosa.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-61208-z

By:

Zhang, Yu;
Zhang, Tingting;
Xiao, Xue;
Wang, Yejun;
Kawalek, Adam;
Ou, Jinzhao;
Ren, Anmin;
Sun, Wenhao;
de Bakker, Vincent;
Liu, Yujie;
Li, Yuelong;
Yang, Liang;
Ye, Liang;
Jia, Ning;
Veening, Jan-Willem;
Liu, Xue

Publication type:

Article

How to get (a)round: mechanisms controlling growth and division of coccoid bacteria.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 9, p. 601, doi. 10.1038/nrmicro3088

By:

Pinho, Mariana G.;
Kjos, Morten;
Veening, Jan-Willem

Publication type:

Article

Uncovering the arsenal of class II bacteriocins in salivarius streptococci.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07217-y

By:

Damoczi, Julien;
Knoops, Adrien;
Martou, Marie-Sophie;
Jaumaux, Félix;
Gabant, Philippe;
Mahillon, Jacques;
Veening, Jan-Willem;
Mignolet, Johann;
Hols, Pascal

Publication type:

Article

The acquisition of clinically relevant amoxicillin resistance in Streptococcus pneumoniae requires ordered horizontal gene transfer of four loci.

Published in:

PLoS Pathogens, 2022, v. 18, n. 7, p. 1, doi. 10.1371/journal.ppat.1010727

By:

Gibson, Paddy S.;
Bexkens, Evan;
Zuber, Sylvia;
Cowley, Lauren A.;
Veening, Jan-Willem

Publication type:

Article

Phenotypic variation in bacteria: the role of feedback regulation.

Published in:

Nature Reviews Microbiology, 2006, v. 4, n. 4, p. 259, doi. 10.1038/nrmicro1381

By:

Smits, Wiep Klaas;
Kuipers, Oscar P.;
Veening, Jan-Willem

Publication type:

Article

AmiA and AliA peptide ligands, found in Klebsiella pneumoniae, are imported into pneumococci and alter the transcriptome.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-63217-2

By:

Lux, Janine;
Sánchez García, Lucía;
Chaparro Fernández, Patricia;
Laloli, Laura;
Licheri, Manon F.;
Gallay, Clement;
Hermans, Peter W. M.;
Croucher, Nicholas J.;
Veening, Jan-Willem;
Dijkman, Ronald;
Straume, Daniel;
Hathaway, Lucy J.

Publication type:

Article

Temporal separation of distinct differentiation pathways by a dual specificity Rap-Phr system in Bacillus subtilis.

Published in:

Molecular Microbiology, 2007, v. 65, n. 1, p. 103, doi. 10.1111/j.1365-2958.2007.05776.x

By:

Smits, Wiep Klaas;
Bongiorni, Cristina;
Veening, Jan-Willem;
Hamoen, Leendert W.;
Kuipers, Oscar P.;
Perego, Marta

Publication type:

Article

Phosphatases modulate the bistable sporulation gene expression pattern inBacillus subtilis.

Published in:

Molecular Microbiology, 2005, v. 56, n. 6, p. 1481, doi. 10.1111/j.1365-2958.2005.04659.x

By:

Veening, Jan-Willem;
Hamoen, Leendert W.;
Kuipers, Oscar P.

Publication type:

Article

The extracellular proteome of Bacillus subtilis under secretion stress conditions.

Published in:

Molecular Microbiology, 2003, v. 49, n. 1, p. 143, doi. 10.1046/j.1365-2958.2003.03565.x

By:

Antelmann, Haike;
Darmon, Elise;
Noone, David;
Veening, Jan-Willem;
Westers, Helga;
Bron, Sierd;
Kuipers, Oscar P.;
Devine, Kevin M.;
Hecker, Michael;
van Dijl, Jan Maarten

Publication type:

Article

Triggering Toll-Like Receptor 5 Signaling During Pneumococcal Superinfection Prevents the Selection of Antibiotic Resistance.

Published in:

Journal of Infectious Diseases, 2024, v. 230, n. 5, p. e1126, doi. 10.1093/infdis/jiae239

By:

Costa, Charlotte;
Sirard, Jean-Claude;
Gibson, Paddy S;
Veening, Jan-Willem;
Gjini, Erida;
Baldry, Mara

Publication type:

Article

In vivo dual RNA-seq reveals that neutrophil recruitment underlies differential tissue tropism of Streptococcus pneumoniae.

Published in:

Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-1018-x

By:

Minhas, Vikrant;
Aprianto, Rieza;
McAllister, Lauren J.;
Wang, Hui;
David, Shannon C.;
McLean, Kimberley T.;
Comerford, Iain;
McColl, Shaun R.;
Paton, James C.;
Veening, Jan-Willem;
Trappetti, Claudia

Publication type:

Article

Balanced transcription of cell division genes in Bacillus subtilis as revealed by single cell analysis.

Published in:

Environmental Microbiology, 2013, v. 15, n. 12, p. 3196, doi. 10.1111/1462-2920.12148

By:

Trip, Erik Nico;
Veening, Jan‐Willem;
Stewart, Eric J.;
Errington, Jeff;
Scheffers, Dirk‐Jan

Publication type:

Article

The localization of key Bacillus subtilis penicillin binding proteins during cell growth is determined by substrate availability.

Published in:

Environmental Microbiology, 2013, v. 15, n. 12, p. 3272, doi. 10.1111/1462-2920.12206

By:

Lages, Marta Carolina Afonso;
Beilharz, Katrin;
Morales Angeles, Danae;
Veening, Jan‐Willem;
Scheffers, Dirk‐Jan

Publication type:

Article

Single cell analysis of gene expression patterns during carbon starvation in Bacillus subtilis reveals large phenotypic variation.

Published in:

Environmental Microbiology, 2012, v. 14, n. 12, p. 3110, doi. 10.1111/j.1462-2920.2012.02892.x

By:

Jong, Imke G.;
Veening, Jan-Willem;
Kuipers, Oscar P.

Publication type:

Article

Three New Integration Vectors and Fluorescent Proteins for Use in the Opportunistic Human Pathogen Streptococcus pneumoniae.

Published in:

Genes, 2019, v. 10, n. 5, p. 394, doi. 10.3390/genes10050394

By:

Keller, Lance E.;
Rueff, Anne-Stéphanie;
Kurushima, Jun;
Veening, Jan-Willem

Publication type:

Article

CRISPRi-seq for genome-wide fitness quantification in bacteria.

Published in:

Nature Protocols, 2022, v. 17, n. 2, p. 252, doi. 10.1038/s41596-021-00639-6

By:

de Bakker, Vincent;
Liu, Xue;
Bravo, Afonso M.;
Veening, Jan-Willem

Publication type:

Article

The ClpX chaperone controls autolytic splitting of Staphylococcus aureus daughter cells, but is bypassed by β-lactam antibiotics or inhibitors of WTA biosynthesis.

Published in:

PLoS Pathogens, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.ppat.1008044

By:

Jensen, Camilla;
Bæk, Kristoffer T.;
Gallay, Clement;
Thalsø-Madsen, Ida;
Xu, Lijuan;
Jousselin, Ambre;
Ruiz Torrubia, Fernando;
Paulander, Wilhelm;
Pereira, Ana R.;
Veening, Jan-Willem;
Pinho, Mariana G.;
Frees, Dorte

Publication type:

Article

Function of BriC peptide in the pneumococcal competence and virulence portfolio.

Published in:

PLoS Pathogens, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.ppat.1007328

By:

Aggarwal, Surya D.;
Eutsey, Rory;
West-Roberts, Jacob;
Domenech, Arnau;
Xu, Wenjie;
Abdullah, Iman Tajer;
Mitchell, Aaron P.;
Veening, Jan-Willem;
Yesilkaya, Hasan;
Hiller, N. Luisa

Publication type:

Article

Autophosphorylation of the Bacterial Tyrosine-Kinase CpsD Connects Capsule Synthesis with the Cell Cycle in Streptococcus pneumoniae.

Published in:

PLoS Genetics, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pgen.1005518

By:

Nourikyan, Julien;
Kjos, Morten;
Mercy, Chryslène;
Cluzel, Caroline;
Morlot, Cécile;
Noirot-Gros, Marie-Francoise;
Guiral, Sébastien;
Lavergne, Jean-Pierre;
Veening, Jan-Willem;
Grangeasse, Christophe

Publication type:

Article

A putative amino acid transporter determines sensitivity to the two-peptide bacteriocin plantaricin JK.

Published in:

MicrobiologyOpen, 2016, v. 5, n. 4, p. 700, doi. 10.1002/mbo3.363

By:

Oppegård, Camilla;
Kjos, Morten;
Veening, Jan‐Willem;
Nissen‐Meyer, Jon;
Kristensen, Tom

Publication type:

Article

To mutate or not to mutate: Genetic and epigenetic heterogeneity contribute to bacterial adaptation (comment on DOI.

Published in:

BioEssays, 2015, v. 37, n. 2, p. 116, doi. 10.1002/bies.201400192

By:

Veening, Jan-Willem

Publication type:

Article

Eavesdropping and crosstalk between secreted quorum sensing peptide signals that regulate bacteriocin production in Streptococcus pneumoniae.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2018, v. 12, n. 10, p. 2363, doi. 10.1038/s41396-018-0178-x

By:

Miller, Eric L.;
Kjos, Morten;
Abrudan, Monica I.;
Roberts, Ian S.;
Veening, Jan-Willem;
Rozen, Daniel E.

Publication type:

Article

BactMAP: An R package for integrating, analyzing and visualizing bacterial microscopy data.

Published in:

Molecular Microbiology, 2020, v. 113, n. 1, p. 297, doi. 10.1111/mmi.14417

By:

Raaphorst, Renske;
Kjos, Morten;
Veening, Jan‐Willem

Publication type:

Article

SosA inhibits cell division in Staphylococcus aureus in response to DNA damage.

Published in:

Molecular Microbiology, 2019, v. 112, n. 4, p. 1116, doi. 10.1111/mmi.14350

By:

Bojer, Martin S.;
Wacnik, Katarzyna;
Kjelgaard, Peter;
Gallay, Clement;
Bottomley, Amy L.;
Cohn, Marianne T.;
Lindahl, Gunnar;
Frees, Dorte;
Veening, Jan‐Willem;
Foster, Simon J.;
Ingmer, Hanne

Publication type:

Article

CozEa and CozEb play overlapping and essential roles in controlling cell division in Staphylococcus aureus.

Published in:

Molecular Microbiology, 2018, v. 109, n. 5, p. 615, doi. 10.1111/mmi.13999

By:

Stamsås, Gro Anita;
Myrbråten, Ine Storaker;
Straume, Daniel;
Salehian, Zhian;
Veening, Jan‐Willem;
Håvarstein, Leiv Sigve;
Kjos, Morten

Publication type:

Article

Pentapeptide-rich peptidoglycan at the Bacillus subtilis cell-division site.

Published in:

Molecular Microbiology, 2017, v. 104, n. 2, p. 319, doi. 10.1111/mmi.13629

By:

Morales Angeles, Danae;
Liu, Yun;
Hartman, Alwin M.;
Borisova, Marina;
de Sousa Borges, Anabela;
de Kok, Niels;
Beilharz, Katrin;
Veening, Jan‐Willem;
Mayer, Christoph;
Hirsch, Anna K.H.;
Scheffers, Dirk‐Jan

Publication type:

Article

Highly conserved nucleotide phosphatase essential for membrane lipid homeostasis in Streptococcus pneumoniae.

Published in:

Molecular Microbiology, 2016, v. 101, n. 1, p. 12, doi. 10.1111/mmi.13312

By:

Kuipers, Kirsten;
Gallay, Clement;
Martínek, Václav;
Rohde, Manfred;
Martínková, Markéta;
van der Beek, Samantha L.;
Jong, Wouter S. P.;
Venselaar, Hanka;
Zomer, Aldert;
Bootsma, Hester;
Veening, Jan‐Willem;
de Jonge, Marien I.

Publication type:

Article

Sensitivity to the two-peptide bacteriocin lactococcin G is dependent on UppP, an enzyme involved in cell-wall synthesis.

Published in:

Molecular Microbiology, 2014, v. 92, n. 6, p. 1177, doi. 10.1111/mmi.12632

By:

Kjos, Morten;
Oppegård, Camilla;
Diep, Dzung B.;
Nes, Ingolf F.;
Veening, Jan‐Willem;
Nissen‐Meyer, Jon;
Kristensen, Tom

Publication type:

Article

S treptococcus pneumoniae PBP2x mid-cell localization requires the C-terminal PASTA domains and is essential for cell shape maintenance.

Published in:

Molecular Microbiology, 2014, v. 92, n. 4, p. 733, doi. 10.1111/mmi.12588

By:

Peters, Katharina;
Schweizer, Inga;
Beilharz, Katrin;
Stahlmann, Christoph;
Veening, Jan‐Willem;
Hakenbeck, Regine;
Denapaite, Dalia

Publication type:

Article

Tracking of chromosome dynamics in live S treptococcus pneumoniae reveals that transcription promotes chromosome segregation.

Published in:

Molecular Microbiology, 2014, v. 91, n. 6, p. 1088, doi. 10.1111/mmi.12517

By:

Kjos, Morten;
Veening, Jan‐Willem

Publication type:

Article

A single amino acid substitution in the MurF UDP- MurNAc-pentapeptide synthetase renders Streptococcus pneumoniae dependent on CO<sub>2</sub> and temperature.

Published in:

Molecular Microbiology, 2013, v. 89, n. 3, p. 494, doi. 10.1111/mmi.12292

By:

Burghout, Peter;
Quintero, Beatríz;
Bos, Linda;
Beilharz, Katrin;
Veening, Jan‐Willem;
Jonge, Marien I.;
Linden, Mark;
Ende, Arie;
Hermans, Peter W. M.

Publication type:

Article

Spo0 A regulates chromosome copy number during sporulation by directly binding to the origin of replication in Bacillus subtilis Spo0 A regulates chromosome copy number during sporulation by directly binding to the origin of replication in Bacillus subtilis

Published in:

Molecular Microbiology, 2013, v. 87, n. 4, p. 925, doi. 10.1111/mmi.12141

By:

Boonstra, Mirjam;
Jong, Imke G.;
Scholefield, Graham;
Murray, Heath;
Kuipers, Oscar P.;
Veening, Jan‐Willem

Publication type:

Article

SMC is recruited to oriC by ParB and promotes chromosome segregation in Streptococcus pneumoniae.

Published in:

Molecular Microbiology, 2011, v. 81, n. 3, p. 676, doi. 10.1111/j.1365-2958.2011.07722.x

By:

Minnen, Anita;
Attaiech, Laetitia;
Thon, Maria;
Gruber, Stephan;
Veening, Jan-Willem

Publication type:

Article

Gene position within a long transcript as a determinant for stochastic switching in bacteria.

Published in:

Molecular Microbiology, 2010, v. 76, n. 2, p. 269, doi. 10.1111/j.1365-2958.2010.07113.x

By:

Veening, Jan-Willem;
Kuipers, Oscar P.

Publication type:

Article

Cellular localization of choline-utilization proteins in Streptococcus pneumoniae using novel fluorescent reporter systems.

Published in:

Molecular Microbiology, 2009, v. 74, n. 2, p. 395, doi. 10.1111/j.1365-2958.2009.06872.x

By:

Eberhardt, Alice;
Wu, Ling J.;
Errington, Jeff;
Vollmer, Waldemar;
Veening, Jan-Willem

Publication type:

Article

Microscale insights into pneumococcal antibiotic mutant selection windows.

Published in:

Nature Communications, 2015, v. 6, n. 10, p. 8773, doi. 10.1038/ncomms9773

By:

Sorg, Robin A.;
Veening, Jan-Willem

Publication type:

Article

Genome-wide analysis of fitness determinants of Staphylococcus aureus during growth in milk.

Published in:

PLoS Pathogens, 2025, v. 21, n. 4, p. 1, doi. 10.1371/journal.ppat.1013080

By:

Mårli, Marita Torrissen;
Nordraak, Anne Olsdatter Ohren;
de Bakker, Vincent;
Winther, Anja Ruud;
Liu, Xue;
Veening, Jan-Willem;
Porcellato, Davide;
Kjos, Morten

Publication type:

Article

Klebsiella pneumoniae peptide hijacks a Streptococcus pneumoniae permease to subvert pneumococcal growth and colonization.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06113-9

By:

Lux, Janine;
Portmann, Hannah;
Sánchez García, Lucía;
Erhardt, Maria;
Holivololona, Lalaina;
Laloli, Laura;
Licheri, Manon F.;
Gallay, Clement;
Hoepner, Robert;
Croucher, Nicholas J.;
Straume, Daniel;
Veening, Jan-Willem;
Dijkman, Ronald;
Heller, Manfred;
Grandgirard, Denis;
Leib, Stephen L.;
Hathaway, Lucy J.

Publication type:

Article

2FAST2Q: a general-purpose sequence search and counting program for FASTQ files.

Published in:

PeerJ, 2022, p. 1, doi. 10.7717/peerj.14041

By:

Bravo, Afonso M.;
Typas, Athanasios;
Veening, Jan-Willem

Publication type:

Article

HU promotes higher order chromosome organization and influences DNA replication rates in Streptococcus pneumoniaeOpen Access.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 8, p. 1, doi. 10.1093/nar/gkaf312

By:

Mazzuoli, Maria-Vittoria;
van Raaphorst, Renske;
Martin, Louise S;
Bock, Florian P;
Thierry, Agnès;
Marbouty, Martial;
Waclawiková, Barbora;
Stinenbosch, Jasper;
Koszul, Romain;
Veening, Jan-Willem

Publication type:

Article

PneumoBrowse 2: an integrated visual platform for curated genome annotation and multiomics data analysis of Streptococcus pneumoniae.

Published in:

Nucleic Acids Research, 2025, v. 53, n. D1, p. D839, doi. 10.1093/nar/gkae923

By:

Janssen, Axel B;
Gibson, Paddy S;
Bravo, Afonso M;
de Bakker, Vincent;
Slager, Jelle;
Veening, Jan-Willem

Publication type:

Article

Prevalence of phase variable epigenetic invertons among host-associated bacteria.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11468, doi. 10.1093/nar/gkaa907

By:

Huang, Xueting;
Wang, Juanjuan;
Li, Jing;
Liu, Yanni;
Liu, Xue;
Li, Zeyao;
Kurniyati, Kurni;
Deng, Yijie;
Wang, Guilin;
Ralph, Joseph D;
De Ste Croix, Megan;
Escobar-Gonzalez, Sara;
Roberts, Richard J;
Veening, Jan-Willem;
Lan, Xun;
Oggioni, Marco R;
Li, Chunhao;
Zhang, Jing-Ren

Publication type:

Article

Deep genome annotation of the opportunistic human pathogen Streptococcus pneumoniae D39.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 9971, doi. 10.1093/nar/gky725

By:

Slager, Jelle;
Aprianto, Rieza;
Veening, Jan-Willem

Publication type:

Article

High-resolution analysis of the pneumococcal transcriptome under a wide range of infection-relevant conditions.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 19, p. 9990, doi. 10.1093/nar/gky750

By:

Aprianto, Rieza;
Slager, Jelle;
Holsappel, Siger;
Veening, Jan-Willem

Publication type:

Article

What makes the lac-pathway switch: identifying the fluctuations that trigger phenotype switching in gene regulatory systems.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. 11321, doi. 10.1093/nar/gku839

By:

Bhogale, Prasanna M.;
Sorg, Robin A.;
Veening, Jan-Willem;
Berg, Johannes

Publication type:

Article

Control of transcription elongation by GreA determines rate of gene expression in Streptococcus pneumoniae.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 17, p. 10987, doi. 10.1093/nar/gku790

By:

Yuzenkova, Yulia;
Gamba, Pamela;
Herber, Martijn;
Attaiech, Laetitia;
Shafeeq, Sulman;
Kuipers, Oscar P.;
Klumpp, Stefan;
Zenkin, Nikolay;
Veening, Jan-Willem

Publication type:

Article

Quorum sensing integrates environmental cues, cell density and cell history to control bacterial competence.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00903-y

By:

Moreno-Gámez, Stefany;
Sorg, Robin A.;
Domenech, Arnau;
Kjos, Morten;
Weissing, Franz J.;
van Doorn, G. Sander;
Veening, Jan-Willem

Publication type:

Article

Time-resolved dual RNA-seq reveals extensive rewiring of lung epithelial and pneumococcal transcriptomes during early infection.

Published in:

Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1054-5

By:

Aprianto, Rieza;
Slager, Jelle;
Holsappel, Siger;
Veening, Jan-Willem

Publication type:

Article

High-throughput CRISPRi phenotyping identifies new essential genes in Streptococcus pneumoniae.

Published in:

Molecular Systems Biology, 2017, v. 13, n. 5, p. 1, doi. 10.15252/msb.20167449

By:

Liu, Xue;
Gallay, Clement;
Kjos, Morten;
Domenech, Arnau;
Slager, Jelle;
Kessel, Sebastiaan P;
Knoops, Kèvin;
Sorg, Robin A;
Zhang, Jing‐Ren;
Veening, Jan‐Willem

Publication type:

Article

Transient heterogeneity in extracellular protease production by Bacillus subtilis.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.18

By:

Veening, Jan‐Willem;
Igoshin, Oleg A;
Eijlander, Robyn T;
Nijland, Reindert;
Hamoen, Leendert W;
Kuipers, Oscar P

Publication type:

Article