Works by Varoquaux, Nelle

Results: 13

Dynamics of the compartmentalized Streptomyces chromosome during metabolic differentiation.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25462-1
By:
- Lioy, Virginia S.;
- Lorenzi, Jean-Noël;
- Najah, Soumaya;
- Poinsignon, Thibault;
- Leh, Hervé;
- Saulnier, Corinne;
- Aigle, Bertrand;
- Lautru, Sylvie;
- Thibessard, Annabelle;
- Lespinet, Olivier;
- Leblond, Pierre;
- Jaszczyszyn, Yan;
- Gorrichon, Kevin;
- Varoquaux, Nelle;
- Junier, Ivan;
- Boccard, Frédéric;
- Pernodet, Jean-Luc;
- Bury-Moné, Stéphanie
Publication type:
Article
Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum.
Published in:
BioEssays, 2015, v. 37, n. 2, p. 182, doi. 10.1002/bies.201400145
By:
- Ay, Ferhat;
- Bunnik, Evelien M.;
- Varoquaux, Nelle;
- Vert, Jean-Philippe;
- Noble, William Stafford;
- Le Roch, Karine G.
Publication type:
Article
Identifying multi-locus chromatin contacts in human cells using tethered multiple 3C.
Published in:
BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1236-7
By:
- Ay, Ferhat;
- Vu, Thanh H.;
- Zeitz, Michael J.;
- Varoquaux, Nelle;
- Carette, Jan E.;
- Vert, Jean-Philippe;
- Hoffman, Andrew R.;
- Noble, William S.
Publication type:
Article
Cell Wall Compositions of Sorghum bicolor Leaves and Roots Remain Relatively Constant Under Drought Conditions.
Published in:
Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.747225
By:
- Scavuzzo-Duggan, Tess;
- Varoquaux, Nelle;
- Madera, Mary;
- Vogel, John P.;
- Dahlberg, Jeffery;
- Hutmacher, Robert;
- Belcher, Michael;
- Ortega, Jasmine;
- Coleman-Derr, Devin;
- Lemaux, Peggy;
- Purdom, Elizabeth;
- Scheller, Henrik V.
Publication type:
Article
Diversification of Ubiquinone Biosynthesis via Gene Duplications, Transfers, Losses, and Parallel Evolution.
Published in:
Molecular Biology & Evolution, 2023, v. 40, n. 10, p. 1, doi. 10.1093/molbev/msad219
By:
- Kazemzadeh, Katayoun;
- Pelosi, Ludovic;
- Chenal, Clothilde;
- Chobert, Sophie-Carole;
- Chehade, Mahmoud Hajj;
- Jullien, Margaux;
- Flandrin, Laura;
- Schmitt, William;
- He, Qiqi;
- Bouvet, Emma;
- Jarzynka, Manon;
- Varoquaux, Nelle;
- Junier, Ivan;
- Pierrel, Fabien;
- Abby, Sophie S
Publication type:
Article
Community, Time, and (Con)text: A Dynamical Systems Analysis of Online Communication and Community Health among Open‐Source Software Communities.
Published in:
Cognitive Science, 2022, v. 46, n. 5, p. 1, doi. 10.1111/cogs.13134
By:
- Paxton, Alexandra;
- Varoquaux, Nelle;
- Holdgraf, Chris;
- Geiger, R. Stuart
Publication type:
Article
Unfolding the Genome: The Case Study of P. falciparum.
Published in:
International Journal of Biostatistics, 2019, v. 15, n. 2, p. N.PAG, doi. 10.1515/ijb-2017-0061
By:
- Varoquaux, Nelle
Publication type:
Article
A statistical approach for inferring the 3D structure of the genome.
Published in:
Bioinformatics, 2014, v. 30, n. 12, p. i26, doi. 10.1093/bioinformatics/btu268
By:
- Varoquaux, Nelle;
- Ay, Ferhat;
- Noble, William Stafford;
- Vert, Jean-Philippe
Publication type:
Article
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.
Published in:
Genome Biology, 2015, v. 18, p. 259, doi. 10.1186/s13059-015-0831-x
By:
- Servant, Nicolas;
- Varoquaux, Nelle;
- Lajoie, Bryan R.;
- Viara, Eric;
- Chen, Chong-Jian;
- Vert, Jean-Philippe;
- Heard, Edith;
- Dekker, Job;
- Barillot, Emmanuel
Publication type:
Article
Accurate identification of centromere locations in yeast genomes using Hi-C.
Published in:
Nucleic Acids Research, 2015, v. 43, n. 11, p. 5331, doi. 10.1093/nar/gkv424
By:
- Varoquaux, Nelle;
- Liachko, Ivan;
- Ay, Ferhat;
- Burton, Joshua N.;
- Shendure, Jay;
- Dunham, Maitreya J.;
- Vert, Jean-Philippe;
- Noble, William S.
Publication type:
Article
Successional adaptive strategies revealed by correlating arbuscular mycorrhizal fungal abundance with host plant gene expression.
Published in:
Molecular Ecology, 2023, v. 32, n. 10, p. 2674, doi. 10.1111/mec.16343
By:
- Gao, Cheng;
- Courty, Pierre‐Emmanuel;
- Varoquaux, Nelle;
- Cole, Benjamin;
- Montoya, Liliam;
- Xu, Ling;
- Purdom, Elizabeth;
- Vogel, John;
- Hutmacher, Robert B.;
- Dahlberg, Jeffery A.;
- Coleman‐Derr, Devin;
- Lemaux, Peggy G.;
- Taylor, John W.
Publication type:
Article
Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23553-7
By:
- Xu, Ling;
- Dong, Zhaobin;
- Chiniquy, Dawn;
- Pierroz, Grady;
- Deng, Siwen;
- Gao, Cheng;
- Diamond, Spencer;
- Simmons, Tuesday;
- Wipf, Heidi M.-L.;
- Caddell, Daniel;
- Varoquaux, Nelle;
- Madera, Mary A.;
- Hutmacher, Robert;
- Deutschbauer, Adam;
- Dahlberg, Jeffery A.;
- Guerinot, Mary Lou;
- Purdom, Elizabeth;
- Banfield, Jillian F.;
- Taylor, John W.;
- Lemaux, Peggy G.
Publication type:
Article
Effective normalization for copy number variation in Hi-C data.
Published in:
BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2256-5
By:
- Servant, Nicolas;
- Varoquaux, Nelle;
- Heard, Edith;
- Barillot, Emmanuel;
- Vert, Jean-Philippe
Publication type:
Article