Works by Varghese, Neha

Results: 40

Medicago root nodule microbiomes: insights into a complex ecosystem with potential candidates for plant growth promotion.

Published in:

Plant & Soil, 2022, v. 471, n. 1/2, p. 507, doi. 10.1007/s11104-021-05247-7

By:

Martínez-Hidalgo, Pilar;
Humm, Ethan A.;
Still, David W.;
Shi, Baochen;
Pellegrini, Matteo;
de la Roca, Gabriela;
Veliz, Esteban;
Maymon, Maskit;
Bru, Pierrick;
Huntemann, Marcel;
Clum, Alicia;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mukherjee, Supratim;
Reddy, T. B. K.;
Daum, Chris;
Ivanova, Natalia N.;
Kyrpides, Nikos C.;
Shapiro, Nicole;
Eloe-Fadrosh, Emiley A.

Publication type:

Article

High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698).

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0236-4

By:

Patil, Yogita;
Müller, Nicolai;
Schink, Bernhard;
Whitman, William B.;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Stamatis, Dimitrios;
Reddy, T. B. K.;
Daum, Chris;
Shapiro, Nicole;
Ivanova, Natalia;
Kyrpides, Nikos;
Woyke, Tanja;
Junghare, Madan

Publication type:

Article

High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76T, isolated from Glycine max (L.) Merr.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0238-2

By:

Reeve, Wayne;
van Berkum, Peter;
Ardley, Julie;
Tian, Rui;
Gollagher, Margaret;
Marinova, Dora;
Elia, Patrick;
Reddy, T. B. K.;
Pillay, Manoj;
Varghese, Neha;
Seshadri, Rekha;
Ivanova, Natalia;
Woyke, Tanja;
Baeshen, Mohamed N.;
Baeshen, Nabih A.;
Kyrpides, Nikos

Publication type:

Article

Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0226-6

By:

Jian-Yu Jiao;
Carro, Lorena;
Lan Liu;
Xiao-Yang Gao;
Xiao-Tong Zhang;
Hozzein, Wael N.;
Lapidus, Alla;
Huntemann, Marcel;
Reddy, T. B. K.;
Varghese, Neha;
Hadjithomas, Michalis;
Ivanova, Natalia N.;
Göker, Markus;
Pillay, Manoj;
Eisen, Jonathan A.;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Wen-Jun Li

Publication type:

Article

Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0229-3

By:

Hutt, Lee P.;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Stamatis, Dimitrios;
Reddy, Tatiparthi;
Daum, Chris;
Shapiro, Nicole;
Ivanova, Natalia;
Kyrpides, Nikos;
Woyke, Tanja;
Boden, Rich

Publication type:

Article

High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-016-0212-4

By:

Klonowska, Agnieszka;
López-López, Aline;
Moulin, Lionel;
Ardley, Julie;
Gollagher, Margaret;
Marinova, Dora;
Tian, Rui;
Huntemann, Marcel;
Reddy, T. B. K.;
Varghese, Neha;
Woyke, Tanja;
Markowitz, Victor;
Ivanova, Natalia;
Seshadri, Rekha;
Baeshen, Mohamed N.;
Baeshen, Nabih A.;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia.

Published in:

Standards in Genomic Sciences, 2016, p. 1, doi. 10.1186/s40793-016-0188-0

By:

Boden, Rich;
Hutt, Lee P.;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Stamatis, Dimitrios;
Reddy, Tatiparthi;
Chew Yee Ngan;
Daum, Chris;
Shapiro, Nicole;
Markowitz, Victor;
Ivanova, Natalia;
Woyke, Tanja;
Kyrpides, Nikos

Publication type:

Article

An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1T.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0193-3

By:

Nicholson, Wayne L.;
Davis, Christina L.;
Shapiro, Nicole;
Huntemann, Marcel;
Clum, Alicia;
Reddy, T. B. K.;
Pillay, Manoj;
Markowitz, Victor;
Varghese, Neha;
Pati, Amrita;
Ivanova, Natalia;
Kyrpides, Nikos;
Woyke, Tanja

Publication type:

Article

Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0168-4

By:

Rice, Marlen C.;
Norton, Jeanette M.;
Valois, Frederica;
Bollmann, Annette;
Bottomley, Peter J.;
Klotz, Martin G.;
Laanbroek, Hendrikus J.;
Suwa, Yuichi;
Stein, Lisa Y.;
Sayavedra-Soto, Luis;
Woyke, Tanja;
Shapiro, Nicole;
Goodwin, Lynne A.;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Kyrpides, Nikos;
Varghese, Neha;
Mikhailova, Natalia;
Markowitz, Victor

Publication type:

Article

High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409 with an incomplete denitrification pathway.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0140-3

By:

Zhou, En-Min;
Murugapiran, Senthil;
Mefferd, Chrisabelle;
Liu, Lan;
Xian, Wen-Dong;
Yin, Yi-Rui;
Ming, Hong;
Yu, Tian-Tian;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Stamatis, Dimitrios;
Reddy, T.;
Ngan, Chew;
Daum, Chris;
Shapiro, Nicole;
Markowitz, Victor

Publication type:

Article

Discovery of a novel filamentous prophage in the genome of the Mimosa pudica microsymbiont Cupriavidus taiwanensis STM 6018.

Published in:

Frontiers in Microbiology, 2023, v. 14, p. 1, doi. 10.3389/fmicb.2023.1082107

By:

Klonowska, Agnieszka;
Ardley, Julie;
Moulin, Lionel;
Zandberg, Jaco;
Patrel, Delphine;
Gollagher, Margaret;
Marinova, Dora;
Reddy, T. B. K.;
Varghese, Neha;
Huntemann, Marcel;
Woyke, Tanja;
Seshadri, Rekha;
Ivanova, Natalia;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

A rare case of primary urethral squamous cell carcinoma with solitary bone metastasis.

Published in:

Egyptian Journal of Radiology & Nuclear Medicine, 2025, v. 56, n. 1, p. 1, doi. 10.1186/s43055-025-01450-z

By:

Varghese, Neha Ann;
Gopal, Boobathi Raja;
Malarmani, Harshini;
Pushparaj, Sathish Prabhu

Publication type:

Article

Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0294-7

By:

Rojas-Rojas, Fernando Uriel;
Tapia-García, Erika Yanet;
Maymon, Maskit;
Humm, Ethan;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Stamatis, Dimitrios;
Reddy, T. B. K.;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Woyke, Tanja;
Shapiro, Nicole;
Hirsch, Ann M.;
Estrada-de los Santos, Paulina

Publication type:

Article

Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0275-x

By:

Dong Han Choi;
Gwang II Jang;
Lapidus, Alla;
Copeland, Alex;
Reddy, T. B. K.;
Mukherjee, Supratim;
Huntemann, Marcel;
Varghese, Neha;
Ivanova, Natalia;
Pillay, Manoj;
Tindall, Brian J.;
Göker, Markus;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Byung Cheol Cho

Publication type:

Article

High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0258-y

By:

Matrosova, Vera Y.;
Gaidamakova, Elena K.;
Makarova, Kira S.;
Grichenko, Olga;
Klimenkova, Polina;
Volpe, Robert P.;
Tkavc, Rok;
Ertem, Gözen;
Conze, Isabel H.;
Brambilla, Evelyne;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Stamatis, Dimitrios;
Reddy, T. B. K.;
Daum, Chris;
Shapiro, Nicole

Publication type:

Article

High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0242-6

By:

Laviad-Shitrit, Sivan;
Göker, Markus;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Stamatis, Dimitrios;
Reddy, T. B. K.;
Daum, Chris;
Shapiro, Nicole;
Markowitz, Victor;
Ivanova, Natalia;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Halpern, Malka

Publication type:

Article

Draft genome sequence of Actinotignum schaalii DSM 15541T: Genetic insights into the lifestyle, cell fitness and virulence.

Published in:

PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0188914

By:

Yassin, Atteyet F.;
Langenberg, Stefan;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Mukherjee, Supratim;
Reddy, T. B. K.;
Daum, Chris;
Shapiro, Nicole;
Ivanova, Natalia;
Woyke, Tanja;
Kyrpides, Nikos C.

Publication type:

Article

Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.

Published in:

Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0222-3

By:

Högfors-Rönnholm, Eva;
Lopez-Fernandez, Margarita;
Christel, Stephan;
Brambilla, Diego;
Huntemann, Marcel;
Clum, Alicia;
Foster, Brian;
Foster, Bryce;
Roux, Simon;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mukherjee, Supratim;
Reddy, T. B. K.;
Daum, Chris;
Copeland, Alex;
Chen, I-Min A.;
Ivanova, Natalia N.;
Kyrpides, Nikos C.;
Harmon-Smith, Miranda;
Eloe-Fadrosh, Emiley A.

Publication type:

Article

Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot.

Published in:

Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0141-3

By:

Camargo, Antonio Pedro;
de Souza, Rafael Soares Correa;
de Britto Costa, Patrícia;
Gerhardt, Isabel Rodrigues;
Dante, Ricardo Augusto;
Teodoro, Grazielle Sales;
Abrahão, Anna;
Lambers, Hans;
Carazzolle, Marcelo Falsarella;
Huntemann, Marcel;
Clum, Alicia;
Foster, Brian;
Foster, Bryce;
Roux, Simon;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mukherjee, Supratim;
Reddy, T. B. K.;
Daum, Chris;
Copeland, Alex

Publication type:

Article

Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom.

Published in:

Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0132-4

By:

Nowinski, Brent;
Smith, Christa B.;
Thomas, Courtney M.;
Esson, Kaitlin;
Marin, Roman;
Preston, Christina M.;
Birch, James M.;
Scholin, Christopher A.;
Huntemann, Marcel;
Clum, Alicia;
Foster, Brian;
Foster, Bryce;
Roux, Simon;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mukherjee, Supratim;
Reddy, T. B. K.;
Daum, Chris;
Copeland, Alex;
Chen, I.-Min A.

Publication type:

Article

Genome‐based evolutionary history of Pseudomonas spp.

Published in:

Environmental Microbiology, 2018, v. 20, n. 6, p. 2142, doi. 10.1111/1462-2920.14130

By:

Hesse, Cedar;
Schulz, Frederik;
Bull, Carolee T.;
Shaffer, Brenda T.;
Yan, Qing;
Shapiro, Nicole;
Hassan, Karl A.;
Varghese, Neha;
Elbourne, Liam D. H.;
Paulsen, Ian T.;
Kyrpides, Nikos;
Woyke, Tanja;
Loper, Joyce E.

Publication type:

Article

Author Correction: A genomic catalog of Earth's microbiomes.

Published in:

2021

By:

Nayfach, Stephen;
Roux, Simon;
Seshadri, Rekha;
Udwary, Daniel;
Varghese, Neha;
Schulz, Frederik;
Wu, Dongying;
Paez-Espino, David;
Chen, I-Min;
Huntemann, Marcel;
Palaniappan, Krishna;
Ladau, Joshua;
Mukherjee, Supratim;
Reddy, T. B. K.;
Nielsen, Torben;
Kirton, Edward;
Faria, José P.;
Edirisinghe, Janaka N.;
Henry, Christopher S.;
Jungbluth, Sean P.

Publication type:

Correction Notice

Publisher Correction: A genomic catalog of Earth's microbiomes.

Published in:

2021

By:

Nayfach, Stephen;
Roux, Simon;
Seshadri, Rekha;
Udwary, Daniel;
Varghese, Neha;
Schulz, Frederik;
Wu, Dongying;
Paez-Espino, David;
Chen, I-Min;
Huntemann, Marcel;
Palaniappan, Krishna;
Ladau, Joshua;
Mukherjee, Supratim;
Reddy, T. B. K.;
Nielsen, Torben;
Kirton, Edward;
Faria, José P.;
Edirisinghe, Janaka N.;
Henry, Christopher S.;
Jungbluth, Sean P.

Publication type:

Correction Notice

A genomic catalog of Earth's microbiomes.

Published in:

Nature Biotechnology, 2021, v. 39, n. 4, p. 499, doi. 10.1038/s41587-020-0718-6

By:

Nayfach, Stephen;
Roux, Simon;
Seshadri, Rekha;
Udwary, Daniel;
Varghese, Neha;
Schulz, Frederik;
Wu, Dongying;
Paez-Espino, David;
Chen, I-Min;
Huntemann, Marcel;
Palaniappan, Krishna;
Ladau, Joshua;
Mukherjee, Supratim;
Reddy, T. B. K.;
Nielsen, Torben;
Kirton, Edward;
Faria, José P.;
Edirisinghe, Janaka N.;
Henry, Christopher S.;
Jungbluth, Sean P.

Publication type:

Article

Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

Published in:

Nature Biotechnology, 2018, v. 36, n. 4, p. 368, doi. 10.1038/nbt0418-368c

By:

Mukherjee, Supratim;
Seshadri, Rekha;
Varghese, Neha J;
Eloe-Fadrosh, Emiley A;
Meier-Kolthoff, Jan P;
Göker, Markus;
Coates, R Cameron;
Hadjithomas, Michalis;
Pavlopoulos, Georgios A;
Paez-Espino, David;
Yoshikuni, Yasuo;
Visel, Axel;
Whitman, William B;
Garrity, George M;
Eisen, Jonathan A;
Hugenholtz, Philip;
Pati, Amrita;
Ivanova, Natalia N;
Woyke, Tanja;
Klenk, Hans-Peter

Publication type:

Article

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.

Published in:

Nature Biotechnology, 2018, v. 36, n. 4, p. 359, doi. 10.1038/nbt.4110

By:

Seshadri, Rekha;
Leahy, Sinead C;
Attwood, Graeme T;
Teh, Koon Hoong;
Lambie, Suzanne C;
Cookson, Adrian L;
Eloe-Fadrosh, Emiley A;
Pavlopoulos, Georgios A;
Hadjithomas, Michalis;
Varghese, Neha J;
Paez-Espino, David;
Perry, Rechelle;
Henderson, Gemma;
Creevey, Christopher J;
Terrapon, Nicolas;
Lapebie, Pascal;
Drula, Elodie;
Lombard, Vincent;
Rubin, Edward;
Kyrpides, Nikos C

Publication type:

Article

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

Published in:

Nature Biotechnology, 2017, v. 35, n. 7, p. 676, doi. 10.1038/nbt.3886

By:

Mukherjee, Supratim;
Seshadri, Rekha;
Varghese, Neha J;
Eloe-Fadrosh, Emiley A;
Meier-Kolthoff, Jan P;
Göker, Markus;
Coates, R Cameron;
Hadjithomas, Michalis;
Pavlopoulos, Georgios A;
Paez-Espino, David;
Yoshikuni, Yasuo;
Visel, Axel;
Whitman, William B;
Garrity, George M;
Eisen, Jonathan A;
Hugenholtz, Philip;
Pati, Amrita;
Ivanova, Natalia N;
Woyke, Tanja;
Klenk, Hans-Peter

Publication type:

Article

Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6623-z

By:

Klonowska, Agnieszka;
Moulin, Lionel;
Ardley, Julie Kaye;
Braun, Florence;
Gollagher, Margaret Mary;
Zandberg, Jaco Daniel;
Marinova, Dora Vasileva;
Huntemann, Marcel;
Reddy, T. B. K.;
Varghese, Neha Jacob;
Woyke, Tanja;
Ivanova, Natalia;
Seshadri, Rekha;
Kyrpides, Nikos;
Reeve, Wayne Gerald

Publication type:

Article

Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota.

Published in:

Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03826-8

By:

Oliver, Tiffany;
Varghese, Neha;
Roux, Simon;
Schulz, Frederik;
Huntemann, Marcel;
Clum, Alicia;
Foster, Brian;
Foster, Bryce;
Riley, Robert;
LaButti, Kurt;
Egan, Robert;
Hajek, Patrick;
Mukherjee, Supratim;
Ovchinnikova, Galina;
Reddy, T. B. K.;
Calhoun, Sara;
Hayes, Richard D.;
Rohwer, Robin R.;
Zhou, Zhichao;
Daum, Chris

Publication type:

Article

IMG/M data management and analysis system v.7: content updates and new features.

Published in:

Nucleic Acids Research, 2023, v. 51, n. D1, p. D723, doi. 10.1093/nar/gkac976

By:

Chen, I-Min A;
Chu, Ken;
Palaniappan, Krishnaveni;
Ratner, Anna;
Huang, Jinghua;
Huntemann, Marcel;
Hajek, Patrick;
Ritter, Stephan J;
Webb, Cody;
Wu, Dongying;
Varghese, Neha J;
Reddy, T B K;
Mukherjee, Supratim;
Ovchinnikova, Galina;
Nolan, Matt;
Seshadri, Rekha;
Roux, Simon;
Visel, Axel;
Woyke, Tanja;
Eloe-Fadrosh, Emiley A

Publication type:

Article

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D666, doi. 10.1093/nar/gky901

By:

Chen, I-Min A;
Chu, Ken;
Palaniappan, Krishna;
Pillay, Manoj;
Ratner, Anna;
Huang, Jinghua;
Huntemann, Marcel;
Varghese, Neha;
White, James R;
Seshadri, Rekha;
Smirnova, Tatyana;
Kirton, Edward;
Jungbluth, Sean P;
Woyke, Tanja;
Eloe-Fadrosh, Emiley A;
Ivanova, Natalia N;
Kyrpides, Nikos C

Publication type:

Article

IMG/M: integrated genome and metagenome comparative data analysis system.

Published in:

Nucleic Acids Research, 2017, v. 45, n. D1, p. D507, doi. 10.1093/nar/gkw929

By:

Chen, I.-Min A.;
Markowitz, Victor M.;
Ken Chu;
Palaniappan, Krishna;
Szeto, Ernest;
Pillay, Manoj;
Ratner, Anna;
Jinghua Huang;
Andersen, Evan;
Huntemann, Marcel;
Varghese, Neha;
Hadjithomas, Michalis;
Tennessen, Kristin;
Nielsen, Torben;
Ivanova, Natalia N.;
Kyrpides, Nikos C.

Publication type:

Article

Microbial species delineation using whole genome sequences.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6761, doi. 10.1093/nar/gkv657

By:

Varghese, Neha J.;
Mukherjee, Supratim;
Ivanova, Natalia;
Konstantinidis, Konstantinos T.;
Mavrommatis, Kostas;
Kyrpides, Nikos C.;
Pati, Amrita

Publication type:

Article

IMG 4 version of the integrated microbial genomes comparative analysis system.

Published in:

Nucleic Acids Research, 2014, v. 42, n. D1, p. D560, doi. 10.1093/nar/gkt963

By:

Markowitz, Victor M.;
Chen, I-Min A.;
Palaniappan, Krishna;
Chu, Ken;
Szeto, Ernest;
Pillay, Manoj;
Ratner, Anna;
Huang, Jinghua;
Woyke, Tanja;
Huntemann, Marcel;
Anderson, Iain;
Billis, Konstantinos;
Varghese, Neha;
Mavromatis, Konstantinos;
Pati, Amrita;
Ivanova, Natalia N.;
Kyrpides, Nikos C.

Publication type:

Article

IMG/M 4 version of the integrated metagenome comparative analysis system.

Published in:

Nucleic Acids Research, 2014, v. 42, n. D1, p. D568, doi. 10.1093/nar/gkt919

By:

Markowitz, Victor M.;
Chen, I-Min A.;
Chu, Ken;
Szeto, Ernest;
Palaniappan, Krishna;
Pillay, Manoj;
Ratner, Anna;
Huang, Jinghua;
Pagani, Ioanna;
Tringe, Susannah;
Huntemann, Marcel;
Billis, Konstantinos;
Varghese, Neha;
Tennessen, Kristin;
Mavromatis, Konstantinos;
Pati, Amrita;
Ivanova, Natalia N.;
Kyrpides, Nikos C.

Publication type:

Article

Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans.

Published in:

Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01254-7

By:

Duncan, Anthony;
Barry, Kerrie;
Daum, Chris;
Eloe-Fadrosh, Emiley;
Roux, Simon;
Schmidt, Katrin;
Tringe, Susannah G.;
Valentin, Klaus U.;
Varghese, Neha;
Salamov, Asaf;
Grigoriev, Igor V.;
Leggett, Richard M.;
Moulton, Vincent;
Mock, Thomas

Publication type:

Article

Relating the Disease Mutation Spectrum to the Evolution of the Cystic Fibrosis Transmembrane Conductance Regulator (CFTR).

Published in:

PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0042336

By:

Rishishwar, Lavanya;
Varghese, Neha;
Tyagi, Eishita;
Harvey, Stephen C.;
Jordan, I. King;
McCarty, Nael A.;
Brusgaard, Klaus

Publication type:

Article

GlyGly-CTERM and Rhombosortase: A C-Terminal Protein Processing Signal in a Many-to-One Pairing with a Rhomboid Family Intramembrane Serine Protease.

Published in:

PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0028886

By:

Haft, Daniel H.;
Varghese, Neha

Publication type:

Article

Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan.

Published in:

Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.632731

By:

Thomas, Scott C.;
Payne, Devon;
Tamadonfar, Kevin O.;
Seymour, Cale O.;
Jiao, Jian-Yu;
Murugapiran, Senthil K.;
Lai, Dengxun;
Lau, Rebecca;
Bowen, Benjamin P.;
Silva, Leslie P.;
Louie, Katherine B.;
Huntemann, Marcel;
Clum, Alicia;
Spunde, Alex;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Chen, I-Min;
Stamatis, Dimitrios

Publication type:

Article

Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources.

Published in:

Current Microbiology, 2019, v. 76, n. 5, p. 566, doi. 10.1007/s00284-019-01657-0

By:

Rojas-Rojas, Fernando Uriel;
Sánchez-López, David;
Tapia-García, Erika Yanet;
Arroyo-Herrera, Ivan;
Maymon, Maskit;
Humm, Ethan;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Stamatis, Dimitrios;
Reddy, T. B. K.;
Ivanova, Natalia;
Kyrpides, Nikos;
Woyke, Tanja;
Shapiro, Nicole;
Hirsch, Ann M.;
Ibarra, J. Antonio

Publication type:

Article