Works by Varani, Alessandro M.

Results: 31

De novo assembly and characterization of a highly degenerated ZW sex chromosome in the fish Megaleporinus macrocephalus.

Published in:

GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae085

By:

Souza-Borges, Carolina Heloisa;
Utsunomia, Ricardo;
Varani, Alessandro M;
Uliano-Silva, Marcela;
Lira, Lieschen Valeria G;
Butzge, Arno J;
Gomez Agudelo, John F;
Manso, Shisley;
Freitas, Milena V;
Ariede, Raquel B;
Mastrochirico-Filho, Vito A;
Penaloza, Carolina;
Barria, Agustín;
Porto-Foresti, Fábio;
Foresti, Fausto;
Hattori, Ricardo;
Guiguen, Yann;
Houston, Ross D;
Hashimoto, Diogo Teruo

Publication type:

Article

Genomic decoding of Theobroma grandiflorum (cupuassu) at chromosomal scale: evolutionary insights for horticultural innovation.

Published in:

GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae027

By:

Alves, Rafael Moysés;
de Abreu, Vinicius A C;
Oliveira, Rafaely Pantoja;
Almeida, João Victor dos Anjos;
de Oliveira, Mauro de Medeiros;
Silva, Saura R;
Paschoal, Alexandre R;
de Almeida, Sintia S;
de Souza, Pedro A F;
Ferro, Jesus A;
Miranda, Vitor F O;
Figueira, Antonio;
Domingues, Douglas S;
Varani, Alessandro M

Publication type:

Article

Analyses of Seven New Genomes of Xanthomonas citri pv. aurantifolii Strains, Causative Agents of Citrus Canker B and C, Show a Reduced Repertoire of Pathogenicity-Related Genes.

Published in:

Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.02361

By:

Fonseca, Natasha Peixoto;
Patané, José S. L.;
Varani, Alessandro M.;
Felestrino, Érica Barbosa;
Caneschi, Washington Luiz;
Sanchez, Angélica Bianchini;
Cordeiro, Isabella Ferreira;
Lemes, Camila Gracyelle de Carvalho;
Assis, Renata de Almeida Barbosa;
Garcia, Camila Carrião Machado;
Belasque Jr., José;
Martins Jr., Joaquim;
Facincani, Agda Paula;
Ferreira, Rafael Marini;
Jaciani, Fabrício José;
Almeida, Nalvo Franco de;
Ferro, Jesus Aparecido;
Moreira, Leandro Marcio;
Setubal, João C.

Publication type:

Article

Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-6007-4

By:

Patané, José S. L.;
Martins, Joaquim;
Rangel, Luiz Thiberio;
Belasque, José;
Digiampietri, Luciano A.;
Facincani, Agda Paula;
Ferreira, Rafael Marini;
Jaciani, Fabrício José;
Zhang, Yunzeng;
Varani, Alessandro M.;
Almeida, Nalvo F.;
Wang, Nian;
Ferro, Jesus A.;
Moreira, Leandro M.;
Setubal, João C.

Publication type:

Article

Unraveling the organellar genomic landscape of the therapeutic and entheogenic plant Mimosa tenuiflora: insights into genetic, structural, and evolutionary dynamics.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01511-y

By:

Trinca, Vitor;
Silva, Saura R.;
Almeida, João V. A.;
Miranda, Vitor F. O.;
Costa-Macedo, José V.;
Carnaval, Tatiane K. B. A.;
Araújo, Draulio B.;
Prosdocimi, Francisco;
Varani, Alessandro M.

Publication type:

Article

Exploratory comparative transcriptomic analysis reveals potential gene targets associated with Cry1A.105 and Cry2Ab2 resistance in fall armyworm (Spodoptera frugiperda)

Published in:

Functional & Integrative Genomics, 2024, v. 24, n. 4, p. 1, doi. 10.1007/s10142-024-01408-w

By:

Castellane, Tereza Cristina L.;
Fernandes, Camila C.;
Pinheiro, Daniel G.;
Lemos, Manoel Victor Franco;
Varani, Alessandro M.

Publication type:

Article

The Chloroplast Genome of Utricularia reniformis Sheds Light on the Evolution of the ndh Gene Complex of Terrestrial Carnivorous Plants from the Lentibulariaceae Family.

Published in:

PLoS ONE, 2016, v. 11, n. 10, p. 1, doi. 10.1371/journal.pone.0165176

By:

Silva, Saura R.;
Diaz, Yani C. A.;
Penha, Helen Alves;
Pinheiro, Daniel G.;
Fernandes, Camila C.;
Miranda, Vitor F. O.;
Michael, Todd P.;
Varani, Alessandro M.

Publication type:

Article

The Terrestrial Carnivorous Plant Utricularia reniformis Sheds Light on Environmental and Life-Form Genome Plasticity.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 1, p. 3, doi. 10.3390/ijms21010003

By:

Silva, Saura R.;
Moraes, Ana Paula;
Penha, Helen A.;
Julião, Maria H. M.;
Domingues, Douglas S.;
Michael, Todd P.;
Miranda, Vitor F. O.;
Varani, Alessandro M.

Publication type:

Article

Intraspecific Variation within the Utricularia amethystina Species Morphotypes Based on Chloroplast Genomes.

Published in:

International Journal of Molecular Sciences, 2019, v. 20, n. 24, p. 6130, doi. 10.3390/ijms20246130

By:

Silva, Saura R.;
Pinheiro, Daniel G.;
Penha, Helen A.;
Płachno, Bartosz J.;
Michael, Todd P.;
Meer, Elliott J.;
Miranda, Vitor F. O.;
Varani, Alessandro M.

Publication type:

Article

A Metagenomic Approach to Cyanobacterial Genomics.

Published in:

Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.00809

By:

Alvarenga, Danillo O.;
Fiore, Marli F.;
Varani, Alessandro M.

Publication type:

Article

Comparative genomic analysis of Genlisea (corkscrew plants—Lentibulariaceae) chloroplast genomes reveals an increasing loss of the ndh genes.

Published in:

PLoS ONE, 2018, v. 13, n. 1, p. 1, doi. 10.1371/journal.pone.0190321

By:

Silva, Saura R.;
Michael, Todd P.;
Meer, Elliott J.;
Pinheiro, Daniel G.;
Varani, Alessandro M.;
Miranda, Vitor F. O.

Publication type:

Article

Metagenomic analysis of soil and freshwater from zoo agricultural area with organic fertilization.

Published in:

PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0190178

By:

Meneghine, Aylan K.;
Nielsen, Shaun;
Varani, Alessandro M.;
Thomas, Torsten;
Carareto Alves, Lucia Maria

Publication type:

Article

The mitochondrial genome of the terrestrial carnivorous plant Utricularia reniformis (Lentibulariaceae): Structure, comparative analysis and evolutionary landmarks.

Published in:

PLoS ONE, 2017, v. 12, n. 7, p. 1, doi. 10.1371/journal.pone.0180484

By:

Silva, Saura R.;
Alvarenga, Danillo O.;
Aranguren, Yani;
Penha, Helen A.;
Fernandes, Camila C.;
Pinheiro, Daniel G.;
Oliveira, Marcos T.;
Michael, Todd P.;
Miranda, Vitor F. O.;
Varani, Alessandro M.

Publication type:

Article

NAD Biosynthesis Evolution in Bacteria: Lateral Gene Transfer of Kynurenine Pathway in Xanthomonadales and Flavobacteriales.

Published in:

Molecular Biology & Evolution, 2009, v. 26, n. 2, p. 399, doi. 10.1093/molbev/msn261

By:

Lima, Wanessa C.;
Varani, Alessandro M.;
Menck, Carlos F. M.

Publication type:

Article

Diversity and potential functional role of phyllosphere-associated actinomycetota isolated from cupuassu (Theobroma grandiflorum) leaves: implications for ecosystem dynamics and plant defense strategies.

Published in:

Molecular Genetics & Genomics, 2024, v. 299, n. 1, p. 1, doi. 10.1007/s00438-024-02162-1

By:

de Matos, Jéssica Pereira;
Ribeiro, Dilson Fagundes;
da Silva, Ana Karla;
de Paula, Camila Henriques;
Cordeiro, Isabella Ferreira;
Lemes, Camila Gracyelle de Carvalho;
Sanchez, Angélica Bianchini;
Rocha, Lorrana Cachuite Mendes;
Garcia, Camila Carrião Machado;
Almeida, Nalvo F.;
Alves, Rafael Moyses;
de Abreu, Vinicius A. C.;
Varani, Alessandro M.;
Moreira, Leandro Marcio

Publication type:

Article

A Genomic and Transcriptomic Overview of MATE, ABC, and MFS Transporters in Citrus sinensis Interaction with Xanthomonas citri subsp. citri.

Published in:

Plants (2223-7747), 2020, v. 9, n. 6, p. 794, doi. 10.3390/plants9060794

By:

Julião, Maria H. M.;
Silva, Saura R.;
Ferro, Jesus A.;
Varani, Alessandro M.

Publication type:

Article

Draft genome sequence of the cyanobacterium Sphaerospermopsis aphanizomenoides BCCUSP55 from the Brazilian semiarid region reveals potential for anti-cancer applications.

Published in:

Archives of Microbiology, 2022, v. 204, n. 1, p. 1, doi. 10.1007/s00203-021-02602-1

By:

Lorenzi, Adriana Sturion;
Bonatelli, Maria Letícia;
Varani, Alessandro M.;
Quecine, Maria Carolina;
Bittencourt-Oliveira, Maria do Carmo

Publication type:

Article

The complete organellar genomes of the entheogenic plant Psychotria viridis (Rubiaceae), a main component of the ayahuasca brew.

Published in:

PeerJ, 2022, p. 1, doi. 10.7717/peerj.14114

By:

Varani, Alessandro M.;
Silva, Saura R.;
Lopes, Simone;
Figueiredo Barbosa, Jose Beethoven;
Oliveira, Danilo;
Corrêa, Maria Alice;
Paula Moraes, Ana;
Miranda, Vitor F. O.;
Prosdocimi, Francisco

Publication type:

Article

Evaluating Eucalyptus leaf colonization by Brasilonema octagenarum (Cyanobacteria, Scytonemataceae) using in planta experiments and genomics.

Published in:

PeerJ, 2020, p. 1, doi. 10.7717/peerj.9158

By:

Alvarenga, Danillo O.;
Franco, Maione W.;
Sivonen, Kaarina;
Fiore, Marli F.;
Varani, Alessandro M.

Publication type:

Article

Detection and identification of Xanthomonas pathotypes associated with citrus diseases using comparative genomics and multiplex PCR.

Published in:

PeerJ, 2019, p. 1, doi. 10.7717/peerj.7676

By:

Fonseca, Natasha P.;
Felestrino, Érica B.;
Caneschi, Washington L.;
Sanchez, Angélica B.;
Cordeiro, Isabella F.;
Lemes, Camila G. C.;
Assis, Renata A. B.;
Carvalho, Flávia M. S.;
Ferro, Jesus A.;
Varani, Alessandro M.;
Belasque, José;
Setubal, Joao C.;
Telles, Guilherme P.;
Aguena, Deiviston S.;
Almeida, Nalvo F.;
Moreira, Leandro M.

Publication type:

Article

Transposons and pathogenicity in Xanthomonas: acquisition of murein lytic transglycosylases by TnXax1 enhances Xanthomonas citri subsp. citri 306 virulence and fitness.

Published in:

PeerJ, 2018, p. 1, doi. 10.7717/peerj.6111

By:

Oliveira, Amanda C. P.;
Ferreira, Rafael M.;
Ferro, Maria Inês T.;
Ferro, Jesus A.;
Chandler, Mick;
Varani, Alessandro M.

Publication type:

Article

Genomic signatures and co‐occurrence patterns of the ultra‐small Saccharimonadia (phylum CPR/Patescibacteria) suggest a symbiotic lifestyle.

Published in:

Molecular Ecology, 2019, v. 28, n. 18, p. 4259, doi. 10.1111/mec.15208

By:

Lemos, Leandro N.;
Medeiros, Julliane D.;
Dini‐Andreote, Francisco;
Fernandes, Gabriel R.;
Varani, Alessandro M.;
Oliveira, Guilherme;
Pylro, Victor S.

Publication type:

Article

ISsaga is an ensemble of web-based methods for high throughput identification and semiautomatic annotation of insertion sequences in prokaryotic genomes.

Published in:

Genome Biology, 2011, v. 12, n. 3, p. 1, doi. 10.1186/gb-2011-12-3-r30

By:

Varani, Alessandro M.;
Siguier, Patricia;
Gourbeyre, Edith;
Charneau, Vincent;
Chandler, Mick

Publication type:

Article

Development of microsatellite markers for the carnivorous plant Genlisea aurea (Lentibulariaceae) using genomics data of NGS.

Published in:

Molecular Biology Reports, 2018, v. 45, n. 1, p. 57, doi. 10.1007/s11033-017-4140-1

By:

Aranguren-Díaz, Yani C.;
Varani, Alessandro M.;
Michael, Todd P.;
Miranda, Vitor F. O.

Publication type:

Article

A Phage-Like Plasmid Carrying bla <sub>KPC-2</sub> Gene in Carbapenem-Resistant Pseudomonas aeruginosa.

Published in:

Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00572

By:

Galetti, Renata;
Andrade, Leonardo Neves;
Varani, Alessandro M.;
Darini, Ana Lúcia Costa

Publication type:

Article

CitrusKB: a comprehensive knowledge base for transcriptome and interactome of Citrus spp. infected by Xanthomonas citri subsp. citri at different infection stages.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa081

By:

Ferrasa, Adriano;
Murata, Mayara M;
Cofre, Teresa D C G;
Cavallini, Juliana S;
Peron, Gustavo;
Julião, Maria H M;
Belasque, José;
Ferreira, Henrique;
Ferro, Maria Inês T;
Leite, Rui P;
Penha, Helen A;
Carvalho, Flávia M S;
Varani, Alessandro M;
Herai, Roberto H;
Ferro, Jesus A

Publication type:

Article

XAC4296 Is a Multifunctional and Exclusive Xanthomonadaceae Gene Containing a Fusion of Lytic Transglycosylase and Epimerase Domains.

Published in:

Microorganisms, 2022, v. 10, n. 5, p. 1008, doi. 10.3390/microorganisms10051008

By:

de Oliveira, Amanda C. P.;
Ferreira, Rafael M.;
Ferro, Maria Inês T.;
Ferro, Jesus A.;
Zamuner, Caio;
Ferreira, Henrique;
Varani, Alessandro M.

Publication type:

Article

Unraveling a Lignocellulose-Decomposing Bacterial Consortium from Soil Associated with Dry Sugarcane Straw by Genomic-Centered Metagenomics.

Published in:

Microorganisms, 2021, v. 9, n. 5, p. 995, doi. 10.3390/microorganisms9050995

By:

Weiss, Bruno;
Souza, Anna Carolina Oliveira;
Constancio, Milena Tavares Lima;
Alvarenga, Danillo Oliveira;
Pylro, Victor S.;
Alves, Lucia M. Carareto;
Varani, Alessandro M.;
Berlemont, Renaud

Publication type:

Article

Riboswitch theo/ metE as a Transcription Regulation Tool for Xanthomonas citri subsp. citri.

Published in:

Microorganisms, 2021, v. 9, n. 2, p. 329, doi. 10.3390/microorganisms9020329

By:

Bueno, Danilo;
Pedrolli, Danielle B.;
Martins, Paula M. M.;
Bocchini, Daniela A.;
Moraes, Karen C. M.;
Facincani, Agda P.;
Ferro, Jesus A.;
Varani, Alessandro M.;
Pena, Michelle M.;
Ferreira, Henrique;
Dame, Remus

Publication type:

Article

The Chloroplast Genome of Passiflora edulis (Passifloraceae) Assembled from Long Sequence Reads: Structural Organization and Phylogenomic Studies in Malpighiales.

Published in:

Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00334

By:

Cauz-Santos, Luiz A.;
Munhoz, Carla F.;
Rodde, Nathalie;
Cauet, Stephane;
Santos, Anselmo A.;
Penha, Helen A.;
Dornelas, Marcelo C.;
Varani, Alessandro M.;
Oliveira, Giancarlo C. X.;
Bergès, Hélène;
Vieira, Maria Lucia C.

Publication type:

Article

The insertion sequence excision enhancer: A PrimPol‐based primer invasion system for immobilizing transposon‐transmitted antibiotic resistance genes.

Published in:

Molecular Microbiology, 2023, v. 120, n. 5, p. 658, doi. 10.1111/mmi.15140

By:

Chandler, Mick;
Ross, Karen;
Varani, Alessandro M.

Publication type:

Article