Works by Vandenkoornhuyse, Philippe

Results: 39

Rare Bacteria Assembly in Soils Is Mainly Driven by Deterministic Processes.

Published in:

Microbial Ecology, 2022, v. 83, n. 1, p. 137, doi. 10.1007/s00248-021-01741-8

By:

Xu, Qicheng;
Ling, Ning;
Quaiser, Achim;
Guo, Junjie;
Ruan, Jianyun;
Guo, Shiwei;
Shen, Qirong;
Vandenkoornhuyse, Philippe

Publication type:

Article

Intra- and inter-annual changes in root endospheric microbial communities of grapevine are mainly deterministic.

Published in:

Plant & Soil, 2024, v. 494, n. 1/2, p. 217, doi. 10.1007/s11104-023-06262-6

By:

Biget, Marine;
Mony, Cendrine;
Wang, Tingting;
Ling, Ning;
Miteul, Adèle;
Jambon, Olivier;
Causse-Védrines, Romain;
Michon-Coudouel, Sophie;
Hervé, Maxime;
Chable, Véronique;
Pernet, Sabrina;
Vandenkoornhuyse, Philippe

Publication type:

Article

Microbial Systems Ecology to Understand Cross-Feeding in Microbiomes.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.780469

By:

Mataigne, Victor;
Vannier, Nathan;
Vandenkoornhuyse, Philippe;
Hacquard, Stéphane

Publication type:

Article

Integration of molecular functions at the ecosystemic level: breakthroughs and future goals of environmental genomics and post-genomics.

Published in:

Ecology Letters, 2010, v. 13, n. 6, p. 776, doi. 10.1111/j.1461-0248.2010.01464.x

By:

Vandenkoornhuyse, Philippe;
Dufresne, Alexis;
Quaiser, Achim;
Gouesbet, Gwenola;
Binet, Françoise;
Francez, André-Jean;
Mah, Stéphane;
Bormans, Myriam;
Lagadeuc, Yvan;
Cou&00#xE9;e, Ivan

Publication type:

Article

Plant communities affect arbuscular mycorrhizal fungal diversity and community composition in grassland microcosms.

Published in:

New Phytologist, 2004, v. 161, n. 2, p. 503, doi. 10.1046/j.1469-8137.2003.00938.x

By:

Johnson, David;
Vandenkoornhuyse, Philippe J.;
Leake, Jonathan R.;
Gilbert, Lucy;
Booth, Rosemary E.;
Grime, J. Philip;
Young, J. Peter W.;
Read, David J.

Publication type:

Article

Genetic variation and heavy metal tolerance in the ectomycorrhizal basidiomycete Suillus luteus.

Published in:

New Phytologist, 2000, v. 147, n. 2, p. 367, doi. 10.1046/j.1469-8137.2000.00694.x

By:

COLPAERT, JAN V.;
VANDENKOORNHUYSE, PHILIPPE;
ADRIAENSEN, KRISTIN;
VANGRONSVELD, JACO

Publication type:

Article

Microorganisms persist at record depths in the subseafloor of the Canterbury Basin.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 7, p. 1370, doi. 10.1038/ismej.2013.250

By:

Ciobanu, Maria-Cristina;
Burgaud, Gaëtan;
Dufresne, Alexis;
Breuker, Anja;
Rédou, Vanessa;
Ben Maamar, Sarah;
Gaboyer, Frédéric;
Vandenabeele-Trambouze, Odile;
Lipp, Julius Sebastian;
Schippers, Axel;
Vandenkoornhuyse, Philippe;
Barbier, Georges;
Jebbar, Mohamed;
Godfroy, Anne;
Alain, Karine

Publication type:

Article

Relationship between bacterial diversity and function under biotic control: the soil pesticide degraders as a case study.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 6, p. 1048, doi. 10.1038/ismej.2010.194

By:

Monard, Cécile;
Vandenkoornhuyse, Philippe;
Le Bot, Barbara;
Binet, Françoise

Publication type:

Article

Neighbourhood effect of weeds on wheat root endospheric mycobiota.

Published in:

Journal of Ecology, 2023, v. 111, n. 5, p. 994, doi. 10.1111/1365-2745.14073

By:

Hu, Jie;
Ricono, Claire;
Fournier, Paola;
Mondy, Samuel;
Vandenkoornhuyse, Philippe;
Mony, Cendrine

Publication type:

Article

Past spatial structure of plant communities determines arbuscular mycorrhizal fungal community assembly.

Published in:

Journal of Ecology, 2020, v. 108, n. 2, p. 546, doi. 10.1111/1365-2745.13279

By:

Bittebiere, Anne‐Kristel;
Vandenkoornhuyse, Philippe;
Maluenda, Elodie;
Gareil, Agnès;
Dheilly, Alexandra;
Coudouel, Sophie;
Bahin, Mathieu;
Mony, Cendrine;
Singh, Brajesh

Publication type:

Article

Nonconventional Imaging for Viable Bacteria Detection: A Review.

Published in:

Microscopy & Microanalysis, 2025, v. 31, n. 1, p. 1, doi. 10.1093/mam/ozae100

By:

Gimenez, Yilbert;
Vandenkoornhuyse, Philippe

Publication type:

Article

Differentiation of endospheric microbiota in ancient and modern wheat cultivar roots.

Published in:

Plant-Environment Interactions, 2021, v. 2, n. 5, p. 235, doi. 10.1002/pei3.10062

By:

Mauger, Solène;
Ricono, Claire;
Mony, Cendrine;
Chable, Vèronique;
Serpolay, Estelle;
Biget, Marine;
Vandenkoornhuyse, Philippe

Publication type:

Article

Landscape connectivity for the invisibles.

Published in:

Ecography, 2022, v. 2022, n. 8, p. 1, doi. 10.1111/ecog.06041

By:

Mony, Cendrine;
Uroy, Léa;
Khalfallah, Fadwa;
Haddad, Nick;
Vandenkoornhuyse, Philippe

Publication type:

Article

Multi-genome metabolic modeling predicts functional inter-dependencies in the Arabidopsis root microbiome.

Published in:

Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01383-z

By:

Mataigne, Victor;
Vannier, Nathan;
Vandenkoornhuyse, Philippe;
Hacquard, Stéphane

Publication type:

Article

Plant neighbours shape fungal assemblages associated with plant roots: A new understanding of niche‐partitioning in plant communities.

Published in:

Functional Ecology, 2021, v. 35, n. 8, p. 1768, doi. 10.1111/1365-2435.13804

By:

Mony, Cendrine;
Gaudu, Valentin;
Ricono, Claire;
Jambon, Olivier;
Vandenkoornhuyse, Philippe

Publication type:

Article

Diversity of culturable marine filamentous fungi from deep-sea hydrothermal vents.

Published in:

Environmental Microbiology, 2009, v. 11, n. 6, p. 1588, doi. 10.1111/j.1462-2920.2009.01886.x

By:

Burgaud, Gaëtan;
Le Calvez, Thomas;
Arzur, Danielle;
Vandenkoornhuyse, Philippe;
Barbier, Georges

Publication type:

Article

Influence Function for Robust Phylogenetic Reconstructions.

Published in:

Molecular Biology & Evolution, 2008, v. 25, n. 5, p. 869, doi. 10.1093/molbev/msn030

By:

Bar-Hen, Avner;
Mariadassou, Mahendra;
Poursat, Marie-Anne;
Vandenkoornhuyse, Philippe

Publication type:

Article

Effect of organic farming on root microbiota, seed production and pathogen resistance in winter wheat fields.

Published in:

Plants, People, Planet, 2025, v. 7, n. 3, p. 871, doi. 10.1002/ppp3.10602

By:

Ricono, Claire;
Mony, Cendrine;
Alignier, Audrey;
Aviron, Stéphanie;
Bertrand, Colette;
Precigout, Pierre‐Antoine;
Robert, Corinne;
Wang, Ting‐Ting;
Vandenkoornhuyse, Philippe

Publication type:

Article

Effect of plant-derived microbial soil legacy in a grafting system—a turn for the better.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01938-2

By:

Wang, Tingting;
Ruan, Yang;
Xu, Qicheng;
Shen, Qirong;
Ling, Ning;
Vandenkoornhuyse, Philippe

Publication type:

Article

AM fungi patchiness and the clonal growth of Glechoma hederacea in heterogeneous environments.

Published in:

Scientific Reports, 2016, p. 37852, doi. 10.1038/srep37852

By:

Vannier, Nathan;
Bittebiere, Anne-Kristel;
Vandenkoornhuyse, Philippe;
Mony, Cendrine

Publication type:

Article

Time-scales of hydrological forcing on the geochemistry and bacterial community structure of temperate peat soils.

Published in:

Scientific Reports, 2015, p. 1, doi. 10.1038/srep14612

By:

Nunes, Flavia L. D.;
Aquilina, Luc;
de Ridder, Jo;
Francez, André-Jean;
Quaiser, Achim;
Caudal, Jean-Pierre;
Vandenkoornhuyse, Philippe;
Dufresne, Alexis

Publication type:

Article

The influence of host‐plant connectivity on fungal assemblages in the root microbiota of Brachypodium pinnatum.

Published in:

Ecology, 2020, v. 101, n. 4, p. 1, doi. 10.1002/ecy.2976

By:

Mony, Cendrine;
Vannier, Nathan;
Brunellière, Philomène;
Biget, Marine;
Coudouel, Sophie;
Vandenkoornhuyse, Philippe

Publication type:

Article

Do fungivores trigger the transfer of protective metabolites from host plants to arbuscular mycorrhizal hyphae?

Published in:

Ecology, 2013, v. 94, n. 9, p. 2019, doi. 10.1890/12-1943.1

By:

Duhamel, Marie;
Pel, Roel;
Ooms, Astra;
Bücking, Heike;
Jansa, Jan;
Ellers, Jacintha;
van Straalen, Nico M.;
Wouda, Tjalf;
Vandenkoornhuyse, Philippe;
Kiers, E. Toby

Publication type:

Article

Unraveling the Stratification of an Iron-Oxidizing Microbial Mat by Metatranscriptomics.

Published in:

PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0102561

By:

Quaiser, Achim;
Bodi, Xavier;
Dufresne, Alexis;
Naquin, Delphine;
Francez, André-Jean;
Dheilly, Alexandra;
Coudouel, Sophie;
Pedrot, Mathieu;
Vandenkoornhuyse, Philippe

Publication type:

Article

PHYMYCO-DB: A Curated Database for Analyses of Fungal Diversity and Evolution.

Published in:

PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0043117

By:

Mahé, Stéphane;
Duhamel, Marie;
Le Calvez, Thomas;
Guillot, Laetitia;
Sarbu, Ludmila;
Bretaudeau, Anthony;
Collin, Olivier;
Dufresne, Alexis;
Kiers, E. Toby;
Vandenkoornhuyse, Philippe;
Steinke, Dirk

Publication type:

Article

Plant host and drought shape the root associated fungal microbiota in rice.

Published in:

PeerJ, 2019, p. 1, doi. 10.7717/peerj.7463

By:

Andreo-Jimenez, Beatriz;
Vandenkoornhuyse, Philippe;
Lê Van, Amandine;
Heutinck, Arvid;
Duhamel, Marie;
Kadam, Niteen;
Jagadish, Krishna;
Ruyter-Spira, Carolien;
Bouwmeester, Harro

Publication type:

Article

The root microlandscape of arbuscular mycorrhizal fungi.

Published in:

New Phytologist, 2024, v. 244, n. 2, p. 394, doi. 10.1111/nph.20048

By:

Mony, Cendrine;
Vannier, Nathan;
Burel, Françoise;
Ernoult, Aude;
Vandenkoornhuyse, Philippe

Publication type:

Article

Ecological corridors homogenize plant root endospheric mycobiota.

Published in:

New Phytologist, 2023, v. 237, n. 4, p. 1347, doi. 10.1111/nph.18606

By:

Hu, Jie;
Vandenkoornhuyse, Philippe;
Khalfallah, Fadwa;
Causse‐Védrines, Romain;
Mony, Cendrine

Publication type:

Article

Seed‐borne, endospheric and rhizospheric core microbiota as predictors of plant functional traits across rice cultivars are dominated by deterministic processes.

Published in:

New Phytologist, 2021, v. 230, n. 5, p. 2047, doi. 10.1111/nph.17297

By:

Guo, Junjie;
Ling, Ning;
Li, Yong;
Li, Kaisong;
Ning, Huiling;
Shen, Qirong;
Guo, Shiwei;
Vandenkoornhuyse, Philippe

Publication type:

Article

Soil fungal assemblage complexity is dependent on soil fertility and dominated by deterministic processes.

Published in:

New Phytologist, 2020, v. 226, n. 1, p. 232, doi. 10.1111/nph.16345

By:

Guo, Junjie;
Ling, Ning;
Chen, Zhaojie;
Xue, Chao;
Li, Ling;
Liu, Lisheng;
Gao, Limin;
Wang, Min;
Ruan, Jianyun;
Guo, Shiwei;
Vandenkoornhuyse, Philippe;
Shen, Qirong

Publication type:

Article

Effect of floristic composition and configuration on plant root mycobiota: a landscape transposition at a small scale.

Published in:

New Phytologist, 2020, v. 225, n. 4, p. 1777, doi. 10.1111/nph.16262

By:

Mony, Cendrine;
Brunellière, Philomène;
Vannier, Nathan;
Bittebiere, Anne‐Kristel;
Vandenkoornhuyse, Philippe

Publication type:

Article

The importance of the microbiome of the plant holobiont.

Published in:

New Phytologist, 2015, v. 206, n. 4, p. 1196, doi. 10.1111/nph.13312

By:

Vandenkoornhuyse, Philippe;
Quaiser, Achim;
Duhamel, Marie;
Le Van, Amandine;
Dufresne, Alexis

Publication type:

Article

A Landscape of Opportunities for Microbial Ecology Research.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.561427

By:

Mony, Cendrine;
Vandenkoornhuyse, Philippe;
Bohannan, Brendan J. M.;
Peay, Kabir;
Leibold, Mathew A

Publication type:

Article

Genetic Mapping of the Root Mycobiota in Rice and its Role in Drought Tolerance.

Published in:

Rice (19398425), 2023, v. 16, n. 1, p. 1, doi. 10.1186/s12284-023-00641-4

By:

Andreo-Jimenez, Beatriz;
te Beest, Dennis E.;
Kruijer, Willem;
Vannier, Nathan;
Kadam, Niteen N.;
Melandri, Giovanni;
Jagadish, S. V. Krishna;
van der Linden, Gerard;
Ruyter-Spira, Carolien;
Vandenkoornhuyse, Philippe;
Bouwmeester, Harro J.

Publication type:

Article

A microorganisms' journey between plant generations.

Published in:

Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0459-7

By:

Vannier, Nathan;
Mony, Cendrine;
Bittebiere, Anne-Kristel;
Michon-Coudouel, Sophie;
Biget, Marine;
Vandenkoornhuyse, Philippe

Publication type:

Article

Epigenetic Mechanisms and Microbiota as a Toolbox for Plant Phenotypic Adjustment to Environment.

Published in:

Frontiers in Plant Science, 2015, p. 1, doi. 10.3389/fpls.2015.01159

By:

Vannier, Nathan;
Mony, Cendrine;
Bittebière, Anne-Kristel;
Vandenkoornhuyse, Philippe

Publication type:

Article

Organic farming and semi‐natural habitats for multifunctional agriculture: A case study in hedgerow landscapes of Brittany.

Published in:

Journal of Applied Ecology, 2025, v. 62, n. 1, p. 53, doi. 10.1111/1365-2664.14825

By:

Boinot, Sébastien;
Alignier, Audrey;
Aviron, Stéphanie;
Bertrand, Colette;
Cheviron, Nathalie;
Comment, Gwendoline;
Jeavons, Emma;
Le Lann, Cécile;
Mondy, Samuel;
Mougin, Christian;
Précigout, Pierre‐Antoine;
Ricono, Claire;
Robert, Corinne;
Saias, Grégoire;
Vandenkoornhuyse, Philippe;
Mony, Cendrine

Publication type:

Article

Beyond the Black Queen Hypothesis.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 9, p. 2085, doi. 10.1038/ismej.2016.22

By:

Mas, Alix;
Jamshidi, Shahrad;
Lagadeuc, Yvan;
Eveillard, Damien;
Vandenkoornhuyse, Philippe

Publication type:

Article

Microorganisms persist at record depths in the subseafloor of the Canterbury Basin.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 11, p. 0, doi. 10.1038/ismej.2014.110

By:

Ciobanu, Maria-Cristina;
Burgaud, Gaëtan;
Dufresne, Alexis;
Breuker, Anja;
Rédou, Vanessa;
Ben Maamar, Sarah;
Gaboyer, Frédéric;
Vandenabeele-Trambouze, Odile;
Lipp, Julius Sebastian;
Schippers, Axel;
Vandenkoornhuyse, Philippe;
Barbier, Georges;
Jebbar, Mohamed;
Godfroy, Anne;
Alain, Karine

Publication type:

Article