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Moose genomes reveal past glacial demography and the origin of modern lineages.
Published in:
BMC Genomics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12864-020-07208-3
By:
- Dussex, Nicolas;
- Alberti, Federica;
- Heino, Matti T.;
- Olsen, Remi-Andre;
- van der Valk, Tom;
- Ryman, Nils;
- Laikre, Linda;
- Ahlgren, Hans;
- Askeyev, Igor V.;
- Askeyev, Oleg V.;
- Shaymuratova, Dilyara N.;
- Askeyev, Arthur O.;
- Döppes, Doris;
- Friedrich, Ronny;
- Lindauer, Susanne;
- Rosendahl, Wilfried;
- Aspi, Jouni;
- Hofreiter, Michael;
- Lidén, Kerstin;
- Dalén, Love
Publication type:
Article
Competitive mapping allows for the identification and exclusion of human DNA contamination in ancient faunal genomic datasets.
Published in:
BMC Genomics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12864-020-07229-y
By:
- Feuerborn, Tatiana R.;
- Palkopoulou, Eleftheria;
- van der Valk, Tom;
- von Seth, Johanna;
- Munters, Arielle R.;
- Pečnerová, Patrícia;
- Dehasque, Marianne;
- Ureña, Irene;
- Ersmark, Erik;
- Lagerholm, Vendela Kempe;
- Krzewińska, Maja;
- Rodríguez-Varela, Ricardo;
- Götherström, Anders;
- Dalén, Love;
- Díez-del-Molino, David
Publication type:
Article
Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22386-8
By:
- von Seth, Johanna;
- Dussex, Nicolas;
- Díez-del-Molino, David;
- van der Valk, Tom;
- Kutschera, Verena E.;
- Kierczak, Marcin;
- Steiner, Cynthia C.;
- Liu, Shanlin;
- Gilbert, M. Thomas P.;
- Sinding, Mikkel-Holger S.;
- Prost, Stefan;
- Guschanski, Katerina;
- Nathan, Senthilvel K. S. S.;
- Brace, Selina;
- Chan, Yvonne L.;
- Wheat, Christopher W.;
- Skoglund, Pontus;
- Ryder, Oliver A.;
- Goossens, Benoit;
- Götherström, Anders
Publication type:
Article
Unravelling reference bias in ancient DNA datasets.
Published in:
Bioinformatics, 2024, v. 40, n. 7, p. 1, doi. 10.1093/bioinformatics/btae436
By:
- Dolenz, Stephanie;
- van der Valk, Tom;
- Jin, Chenyu;
- Oppenheimer, Jonas;
- Sharif, Muhammad Bilal;
- Orlando, Ludovic;
- Shapiro, Beth;
- Dalén, Love;
- Heintzman, Peter D
Publication type:
Article
Antimicrobial peptide and sequence variation along a latitudinal gradient in two anurans.
Published in:
BMC Genetics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12863-020-00839-1
By:
- Cortázar-Chinarro, Maria;
- Meyer-Lucht, Yvonne;
- Van der Valk, Tom;
- Richter-Boix, Alex;
- Laurila, Anssi;
- Höglund, Jacob
Publication type:
Article
Dental Calculus as a Tool to Study the Evolution of the Mammalian Oral Microbiome.
Published in:
Molecular Biology & Evolution, 2020, v. 37, n. 10, p. 3003, doi. 10.1093/molbev/msaa135
By:
- Brealey, Jaelle C;
- Leitão, Henrique G;
- van der Valk, Tom;
- Xu, Wenbo;
- Bougiouri, Katia;
- Dalén, Love;
- Guschanski, Katerina
Publication type:
Article
The Genome of the Endangered Dryas Monkey Provides New Insights into the Evolutionary History of the Vervets.
Published in:
Molecular Biology & Evolution, 2020, v. 37, n. 1, p. 183, doi. 10.1093/molbev/msz213
By:
- van der Valk, Tom;
- Gonda, Catalina M;
- Silegowa, Henri;
- Almanza, Sandra;
- Sifuentes-Romero, Itzel;
- Hart, Terese B;
- Hart, John A;
- Detwiler, Kate M;
- Guschanski, Katerina
Publication type:
Article
Comparative genomic analyses provide new insights into evolutionary history and conservation genomics of gorillas.
Published in:
BMC Ecology & Evolution, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12862-023-02195-x
By:
- van der Valk, Tom;
- Jensen, Axel;
- Caillaud, Damien;
- Guschanski, Katerina
Publication type:
Article
Whole‐genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species.
Published in:
Plant Journal, 2024, v. 117, n. 3, p. 944, doi. 10.1111/tpj.16535
By:
- Estravis Barcala, Maximiliano;
- van der Valk, Tom;
- Chen, Zhiqiang;
- Funda, Tomas;
- Chaudhary, Rajiv;
- Klingberg, Adam;
- Fundova, Irena;
- Suontama, Mari;
- Hallingbäck, Henrik;
- Bernhardsson, Carolina;
- Nystedt, Björn;
- Ingvarsson, Pär K.;
- Sherwood, Ellen;
- Street, Nathaniel;
- Gyllensten, Ulf;
- Nilsson, Ove;
- Wu, Harry X.
Publication type:
Article
aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow.
Published in:
Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-03083-9
By:
- Pochon, Zoé;
- Bergfeldt, Nora;
- Kırdök, Emrah;
- Vicente, Mário;
- Naidoo, Thijessen;
- van der Valk, Tom;
- Altınışık, N. Ezgi;
- Krzewińska, Maja;
- Dalén, Love;
- Götherström, Anders;
- Mirabello, Claudio;
- Unneberg, Per;
- Oskolkov, Nikolay
Publication type:
Article
Target-Specificity in Scorpions; Comparing Lethality of Scorpion Venoms across Arthropods and Vertebrates.
Published in:
Toxins, 2017, v. 9, n. 10, p. 312, doi. 10.3390/toxins9100312
By:
- van der Meijden, Arie;
- Koch, Bjørn;
- van der Valk, Tom;
- Vargas-Muñoz, Leidy J.;
- Estrada-Gómez, Sebastian
Publication type:
Article
Population genomics of the muskox' resilience in the near absence of genetic variation.
Published in:
Molecular Ecology, 2024, v. 33, n. 2, p. 1, doi. 10.1111/mec.17205
By:
- Pečnerová, Patrícia;
- Lord, Edana;
- Garcia‐Erill, Genís;
- Hanghøj, Kristian;
- Rasmussen, Malthe Sebro;
- Meisner, Jonas;
- Liu, Xiaodong;
- van der Valk, Tom;
- Santander, Cindy G.;
- Quinn, Liam;
- Lin, Long;
- Liu, Shanlin;
- Carøe, Christian;
- Dalerum, Fredrik;
- Götherström, Anders;
- Måsviken, Johannes;
- Vartanyan, Sergey;
- Raundrup, Katrine;
- Al‐Chaer, Amal;
- Rasmussen, Linett
Publication type:
Article
Index hopping on the Illumina HiseqX platform and its consequences for ancient DNA studies.
Published in:
Molecular Ecology Resources, 2020, v. 20, n. 5, p. 1171, doi. 10.1111/1755-0998.13009
By:
- van der Valk, Tom;
- Vezzi, Francesco;
- Ormestad, Mattias;
- Dalén, Love;
- Guschanski, Katerina
Publication type:
Article
GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species.
Published in:
BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04757-0
By:
- Kutschera, Verena E.;
- Kierczak, Marcin;
- van der Valk, Tom;
- von Seth, Johanna;
- Dussex, Nicolas;
- Lord, Edana;
- Dehasque, Marianne;
- Stanton, David W. G.;
- Khoonsari, Payam Emami;
- Nystedt, Björn;
- Dalén, Love;
- Díez-del-Molino, David
Publication type:
Article
Genomic trajectories of a near-extinction event in the Chatham Island black robin.
Published in:
BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08963-1
By:
- von Seth, Johanna;
- van der Valk, Tom;
- Lord, Edana;
- Sigeman, Hanna;
- Olsen, Remi-André;
- Knapp, Michael;
- Kardailsky, Olga;
- Robertson, Fiona;
- Hale, Marie;
- Houston, Dave;
- Kennedy, Euan;
- Dalén, Love;
- Norén, Karin;
- Massaro, Melanie;
- Robertson, Bruce C.;
- Dussex, Nicolas
Publication type:
Article
Genomic trajectories of a near-extinction event in the Chatham Island black robin.
Published in:
BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08963-1
By:
- von Seth, Johanna;
- van der Valk, Tom;
- Lord, Edana;
- Sigeman, Hanna;
- Olsen, Remi-André;
- Knapp, Michael;
- Kardailsky, Olga;
- Robertson, Fiona;
- Hale, Marie;
- Houston, Dave;
- Kennedy, Euan;
- Dalén, Love;
- Norén, Karin;
- Massaro, Melanie;
- Robertson, Bruce C.;
- Dussex, Nicolas
Publication type:
Article

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