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MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. D1, p. D517, doi. 10.1093/nar/gkw1101
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- Publication type:
- Article
MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data.
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- Nucleic Acids Research, 2013, v. 41, p. D636, doi. 10.1093/nar/gks1194
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- Publication type:
- Article
Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year period.
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- Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00892-0
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- Article
A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century.
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- Microbial Biotechnology, 2023, v. 16, n. 6, p. 1203, doi. 10.1111/1751-7915.14257
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- Article
Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement.
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- Microbial Biotechnology, 2018, v. 11, n. 1, p. 3, doi. 10.1111/1751-7915.13043
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- Article
Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila.
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- Nature Biotechnology, 2006, v. 24, n. 6, p. 673, doi. 10.1038/nbt1212
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- Article
Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 11, p. 1735, doi. 10.1038/ismej.2011.51
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- Article
Ralstonia syzygii, the Blood Disease Bacterium and Some Asian R. solanacearum Strains Form a Single Genomic Species Despite Divergent Lifestyles.
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- PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024356
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- Article
A Novel Acyl-CoA Beta-Transaminase Characterized from a Metagenome.
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- PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0022918
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- Article
Comparative Analysis of Acinetobacters: Three Genomes for Three Lifestyles.
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- PLoS ONE, 2008, v. 3, n. 3, p. 1, doi. 10.1371/journal.pone.0001805
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- Article
A new network representation of the metabolism to detect chemical transformation modules.
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- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0809-4
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- Publication type:
- Article
Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
- Published in:
- 2021
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- Correction Notice
Deciphering the evolution and metabolism of an anammox bacterium from a community genome.
- Published in:
- 2006
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- Publication type:
- Letter
From Strain Characterization to Field Authorization: Highlights on Bacillus velezensis Strain B25 Beneficial Properties for Plants and Its Activities on Phytopathogenic Fungi.
- Published in:
- Microorganisms, 2021, v. 9, n. 9, p. 1924, doi. 10.3390/microorganisms9091924
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- Publication type:
- Article
Frankia alni proteome under nitrogen-fixing and nitrogen-replete conditions.
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- Physiologia Plantarum, 2007, v. 130, n. 3, p. 440, doi. 10.1111/j.1399-3054.2007.00859.x
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- Publication type:
- Article
MaGe: a microbial genome annotation system supported by synteny results.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. 1, p. 53, doi. 10.1093/nar/gkj406
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- Publication type:
- Article
MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w471, doi. 10.1093/nar/gki498
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- Publication type:
- Article
Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. 19, p. 5766, doi. 10.1093/nar/gkh910
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- Publication type:
- Article
AMIGene: Annotation of MIcrobial Genes.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 13, p. 3723, doi. 10.1093/nar/gkg590
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- Publication type:
- Article
A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1.
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- Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.10
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- Publication type:
- Article
The CanOE Strategy: Integrating Genomic and Metabolic Contexts across Multiple Prokaryote Genomes to Find Candidate Genes for Orphan Enzymes.
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- PLoS Computational Biology, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002540
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- Publication type:
- Article
MicroScope—an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data.
- Published in:
- Briefings in Bioinformatics, 2019, p. 1071, doi. 10.1093/bib/bbx113
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- Publication type:
- Article
The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis.
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- Environmental Microbiology, 2016, v. 18, n. 10, p. 3403, doi. 10.1111/1462-2920.13230
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- Publication type:
- Article
Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies.
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- Genome Biology, 2013, v. 14, n. 2, p. 1, doi. 10.1186/gb-2013-14-2-r17
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- Publication type:
- Article
Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium.
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- Genome Biology & Evolution, 2017, v. 9, n. 12, p. 3413, doi. 10.1093/gbe/evx255
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- Publication type:
- Article
RNA Sequencing and Proteogenomics Reveal the Importance of Leaderless mRNAs in the Radiation-Tolerant Bacterium Deinococcus deserti.
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- Genome Biology & Evolution, 2014, v. 6, n. 4, p. 932, doi. 10.1093/gbe/evu069
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- Publication type:
- Article
Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria.
- Published in:
- MicrobiologyOpen, 2017, v. 6, n. 4, p. 1, doi. 10.1002/mbo3.477
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- Publication type:
- Article
MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. D1, p. D579, doi. 10.1093/nar/gkz926
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- Publication type:
- Article
A novel binary pesticidal protein from Chryseobacterium arthrosphaerae controls western corn rootworm by a different mode of action to existing commercial pesticidal proteins.
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- PLoS ONE, 2023, v. 17, n. 2, p. 1, doi. 10.1371/journal.pone.0267220
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- Publication type:
- Article
Profiling the orphan enzymes.
- Published in:
- Biology Direct, 2014, v. 9, n. 1, p. 1, doi. 10.1186/1745-6150-9-10
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- Publication type:
- Article
GROOLS: reactive graph reasoning for genome annotation through biological processes.
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- BMC Bioinformatics, 2018, v. 19, p. 1, doi. 10.1186/s12859-018-2126-1
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- Publication type:
- Article
Comparative Genomics of Multidrug Resistance in Acinetobacter baumannii.
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- PLoS Genetics, 2006, v. 2, n. 1, p. e7, doi. 10.1371/journal.pgen.0020007
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- Article
A refined picture of the native amine dehydrogenase family revealed by extensive biodiversity screening.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49009-2
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- Article
Revealing the hidden functional diversity of an enzyme family.
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- Nature Chemical Biology, 2014, v. 10, n. 1, p. 42, doi. 10.1038/nchembio.1387
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- Publication type:
- Article
The Nocardia cyriacigeorgica GUH-2 genome shows ongoing adaptation of an environmental Actinobacteria to a pathogen's lifestyle.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-286
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- Publication type:
- Article
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.
- Published in:
- PLoS Computational Biology, 2020, v. 16, n. 3, p. 1, doi. 10.1371/journal.pcbi.1007732
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- Publication type:
- Article
panRGP: a pangenome-based method to predict genomic islands and explore their diversity.
- Published in:
- Bioinformatics, 2020, v. 36, p. i651, doi. 10.1093/bioinformatics/btaa792
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- Publication type:
- Article
Evolutionary Evidence of Algal Polysaccharide Degradation Acquisition by Pseudoalteromonas carrageenovora 9<sup>T</sup> to Adapt to Macroalgal Niches.
- Published in:
- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02740
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- Article
Construction of a complete set of Neisseria meningitidis mutants and its use for the phenotypic profiling of this human pathogen.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19347-y
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- Publication type:
- Article
Comparative Genomics of Aeschynomene Symbionts: Insights into the Ecological Lifestyle of Nod-Independent Photosynthetic Bradyrhizobia.
- Published in:
- Genes, 2012, v. 3, n. 1, p. 35, doi. 10.3390/genes3010035
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- Publication type:
- Article