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Distinct chromosomal "niches" in the genome of Saccharomyces cerevisiae provide the background for genomic innovation and shape the fate of gene duplicates.
Published in:
NAR Genomics & Bioinformatics, 2022, v. 4, n. 4, p. 1, doi. 10.1093/nargab/lqac086
By:
- Stavropoulou, Athanasia;
- Tassios, Emilios;
- Kalyva, Maria;
- Georgoulopoulos, Michalis;
- Vakirlis, Nikolaos;
- Iliopoulos, Ioannis;
- Nikolaou, Christoforos
Publication type:
Article
Intergenic Regions of Saccharomycotina Yeasts are Enriched in Potential to Encode Transmembrane Domains.
Published in:
Molecular Biology & Evolution, 2023, v. 40, n. 3, p. 1, doi. 10.1093/molbev/msad059
By:
- Tassios, Emilios;
- Nikolaou, Christoforos;
- Vakirlis, Nikolaos
Publication type:
Article
A Molecular Portrait of De Novo Genes in Yeasts.
Published in:
Molecular Biology & Evolution, 2018, v. 35, n. 3, p. 631, doi. 10.1093/molbev/msx315
By:
- Vakirlis, Nikolaos;
- Hebert, Alex S;
- Opulente, Dana A;
- Achaz, Guillaume;
- Hittinger, Chris Todd;
- Fischer, Gilles;
- Coon, Joshua J;
- Lafontaine, Ingrid
Publication type:
Article
Ancestral Sequence Reconstruction as a Tool to Detect and Study De Novo Gene Emergence.
Published in:
Genome Biology & Evolution, 2024, v. 16, n. 8, p. 1, doi. 10.1093/gbe/evae151
By:
- Vakirlis, Nikolaos;
- Acar, Omer;
- Cherupally, Vijay;
- Carvunis, Anne-Ruxandra
Publication type:
Article
Interlaboratory Comparison Study on Ribodepleted Total RNA High-Throughput Sequencing for Plant Virus Diagnostics and Bioinformatic Competence.
Published in:
Pathogens, 2021, v. 10, n. 9, p. 1174, doi. 10.3390/pathogens10091174
By:
- Gaafar, Yahya Z. A.;
- Westenberg, Marcel;
- Botermans, Marleen;
- László, Krizbai;
- De Jonghe, Kris;
- Foucart, Yoika;
- Ferretti, Luca;
- Kutnjak, Denis;
- Pecman, Anja;
- Mehle, Nataša;
- Kreuze, Jan;
- Muller, Giovanna;
- Vakirlis, Nikolaos;
- Beris, Despoina;
- Varveri, Christina;
- Ziebell, Heiko
Publication type:
Article
Evolutionary journey and characterisation of a novel pan‐gene associated with beer strains of Saccharomyces cerevisiae.
Published in:
Yeast, 2019, v. 36, n. 7, p. 425, doi. 10.1002/yea.3391
By:
- Vakirlis, Nikolaos;
- Monerawela, Chandre;
- McManus, Gavin;
- Ribeiro, Orquidea;
- McLysaght, Aoife;
- James, Tharappel;
- Bond, Ursula
Publication type:
Article
Active in vivo translocation of the Methanosarcina mazei Gö1 Casposon.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 13, p. 6927, doi. 10.1093/nar/gkad474
By:
- Gehlert, Finn O;
- Nickel, Lisa;
- Vakirlis, Nikolaos;
- Hammerschmidt, Katrin;
- Vargas Gebauer, Herman I;
- Kießling, Claudia;
- Kupczok, Anne;
- Schmitz, Ruth A
Publication type:
Article
Author Correction: De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences.
Published in:
2021
By:
- Vakirlis, Nikolaos;
- Acar, Omer;
- Hsu, Brian;
- Coelho, Nelson Castilho;
- Van Oss, S. Branden;
- Wacholder, Aaron;
- Medetgul-Ernar, Kate;
- Bowman II, Ray W.;
- Hines, Cameron P.;
- Iannotta, John;
- Parikh, Saurin Bipin;
- McLysaght, Aoife;
- Camacho, Carlos J.;
- O'Donnell, Allyson F.;
- Ideker, Trey;
- Carvunis, Anne-Ruxandra
Publication type:
Correction Notice
De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-14500-z
By:
- Vakirlis, Nikolaos;
- Acar, Omer;
- Hsu, Brian;
- Castilho Coelho, Nelson;
- Van Oss, S. Branden;
- Wacholder, Aaron;
- Medetgul-Ernar, Kate;
- Bowman II, Ray W.;
- Hines, Cameron P.;
- Iannotta, John;
- Parikh, Saurin Bipin;
- McLysaght, Aoife;
- Camacho, Carlos J.;
- O'Donnell, Allyson F.;
- Ideker, Trey;
- Carvunis, Anne-Ruxandra
Publication type:
Article

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