Works matching AU Upton, Chris

Results: 37

Subversion of Cytokine Networks by Viruses.

Published in:

International Reviews of Immunology, 1998, v. 17, n. 1-4, p. 121, doi. 10.3109/08830189809084490

By:

Wall, Erika M.;
Cao, Jing-Xin;
Upton, Chris

Publication type:

Article

Complete Genome Sequencing and Comparative Phylogenomics of Nine African Swine Fever Virus (ASFV) Isolates of the Virulent East African p72 Genotype IX without Viral Sequence Enrichment.

Published in:

Viruses (1999-4915), 2024, v. 16, n. 9, p. 1466, doi. 10.3390/v16091466

By:

Domelevo Entfellner, Jean-Baka;
Okoth, Edward Abworo;
Onzere, Cynthia Kavulani;
Upton, Chris;
Njau, Emma Peter;
Höper, Dirk;
Henson, Sonal P.;
Oyola, Samuel O.;
Bochere, Edwina;
Machuka, Eunice M.;
Bishop, Richard P.

Publication type:

Article

Base-By-Base Version 3: New Comparative Tools for Large Virus Genomes.

Published in:

Viruses (1999-4915), 2018, v. 10, n. 11, p. 637, doi. 10.3390/v10110637

By:

Tu, Shin-Lin;
Staheli, Jeannette P.;
McClay, Colum;
McLeod, Kathleen;
Rose, Timothy M.;
Upton, Chris

Publication type:

Article

Re-Assembly and Analysis of an Ancient Variola Virus Genome.

Published in:

Viruses (1999-4915), 2017, v. 9, n. 9, p. 253, doi. 10.3390/v9090253

By:

Smithson, Chad;
Imbery, Jacob;
Upton, Chris

Publication type:

Article

Problems in the assembly and analysis of the kangaroopox virus-NSW isolate.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-68967-7

By:

Tu, Shin-Lin;
Upton, Chris

Publication type:

Article

Genomic Analysis of Highly Virulent Georgia 2007/1 Isolate of African Swine Fever Virus.

Published in:

Emerging Infectious Diseases, 2011, v. 17, n. 4, p. 599, doi. 10.3201/eid1704.101283

By:

Chapman, David A. G.;
Darby, Alistair C.;
Da Silva, Melissa;
Upton, Chris;
Radford, Alan D.;
Dixon, Linda K.

Publication type:

Article

Poxvirus Bioinformatics Resource Center: a comprehensive Poxviridae informational and analytical resource.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d311

By:

Lefkowitz, Elliot J.;
Upton, Chris;
Changayil, Shankar S.;
Buck, Charles;
Traktman, Paula;
Buller, R. Mark L.

Publication type:

Article

Suffix tree searcher: exploration of common substrings in large DNA sequence sets.

Published in:

BMC Research Notes, 2014, v. 7, n. 1, p. 1, doi. 10.1186/1756-0500-7-466

By:

Minkley, David;
Whitney, Michael J.;
Song-Han Lin;
Barsky, Marina G.;
Kelly, Chris;
Upton, Chris

Publication type:

Article

KISSa: a strategy to build multiple sequence alignments from pairwise comparisons of very closely related sequences.

Published in:

BMC Research Notes, 2009, v. 2, p. 1, doi. 10.1186/1756-0500-2-91

By:

Marass, Francesco;
Upton, Chris

Publication type:

Article

Complete genome sequence of a novel sea otterpox virus.

Published in:

Virus Genes, 2018, v. 54, n. 6, p. 756, doi. 10.1007/s11262-018-1594-8

By:

Jacob, Jessica M.;
Subramaniam, Kuttichantran;
Tu, Shin-Lin;
Nielsen, Ole;
Tuomi, Pamela A.;
Upton, Chris;
Waltzek, Thomas B.

Publication type:

Article

Characterization of Eptesipoxvirus, a novel poxvirus from a microchiropteran bat.

Published in:

Virus Genes, 2017, v. 53, n. 6, p. 856, doi. 10.1007/s11262-017-1485-4

By:

Tu, Shin-Lin;
Nakazawa, Yoshinori;
Gao, Jinxin;
Wilkins, Kimberly;
Gallardo-Romero, Nadia;
Li, Yu;
Emerson, Ginny;
Carroll, Darin;
Upton, Chris

Publication type:

Article

Two novel poxviruses with unusual genome rearrangements: NY_014 and Murmansk.

Published in:

Virus Genes, 2017, v. 53, n. 6, p. 883, doi. 10.1007/s11262-017-1501-8

By:

Smithson, Chad;
Meyer, Hermann;
Gigante, Crystal;
Gao, Jinxin;
Zhao, Hui;
Batra, Dhwani;
Damon, Inger;
Upton, Chris;
Li, Yu

Publication type:

Article

The genomes of three North American orthopoxviruses.

Published in:

Virus Genes, 2017, v. 53, n. 1, p. 21, doi. 10.1007/s11262-016-1388-9

By:

Smithson, Chad;
Tang, Nick;
Sammons, Scott;
Frace, Mike;
Batra, Dhwani;
Li, Yu;
Emerson, Ginny;
Carroll, Darin;
Upton, Chris

Publication type:

Article

Comparative analysis of the complete genome sequences of Kenyan African swine fever virus isolates within p72 genotypes IX and X.

Published in:

Virus Genes, 2015, v. 50, n. 2, p. 303, doi. 10.1007/s11262-014-1156-7

By:

Bishop, Richard;
Fleischauer, Clare;
de Villiers, Etienne;
Okoth, Edward;
Arias, Marisa;
Gallardo, Carmina;
Upton, Chris

Publication type:

Article

Expression of a non-coding RNA in ectromelia virus is required for normal plaque formation.

Published in:

Virus Genes, 2014, v. 48, n. 1, p. 38, doi. 10.1007/s11262-013-0983-2

By:

Esteban, David;
Upton, Chris;
Bartow-McKenney, Casey;
Buller, R.;
Chen, Nanhai;
Schriewer, Jill;
Lefkowitz, Elliot;
Wang, Chunlin

Publication type:

Article

Characterization of indels in poxvirus genomes.

Published in:

Virus Genes, 2011, v. 42, n. 2, p. 171, doi. 10.1007/s11262-010-0560-x

By:

Coulson, Danielle;
Upton, Chris

Publication type:

Article

Predicted function of the vaccinia virus G5R protein.

Published in:

Bioinformatics, 2006, v. 22, n. 23, p. 2846, doi. 10.1093/bioinformatics/btl506

By:

Silva, Melissa Da;
Shen, Ling;
Tcherepanov, Vasily;
Watson, Cristalle;
Upton, Chris

Publication type:

Article

Poxvirus Orthologous Clusters (POCs).

Published in:

Bioinformatics, 2002, v. 18, n. 11, p. 1544, doi. 10.1093/bioinformatics/18.11.1544

By:

Ehlers, Angelika;
Osborne, John;
Slack, Stephanie;
Roper, Rachel L.;
Upton, Chris

Publication type:

Article

BLAST Search Updater: a notification system for new database matches.

Published in:

Bioinformatics, 2000, v. 16, n. 11, p. 1054, doi. 10.1093/bioinformatics/16.11.1054

By:

Boone, Matthew;
Upton, Chris

Publication type:

Article

Viral Genome DataBase: storing and analyzing genes and proteins from complete viral genomes.

Published in:

Bioinformatics, 2000, v. 16, n. 5, p. 484, doi. 10.1093/bioinformatics/16.5.484

By:

Hiscock, David;
Upton, Chris

Publication type:

Article

Novel Poxvirus Infection in an Immune Suppressed Patient.

Published in:

2015

By:

Lakis, Nelli S.;
Yu Li;
Abraham, Jerrold L.;
Upton, Chris;
Blair, Donald C.;
Smith, Scott;
Hui Zhao;
Damon, Inger K.

Publication type:

Case Study

Vaccinia Virus-Encoded Ribonucleotide Reductase Subunits Are Differentially Required for Replication and Pathogenesis.

Published in:

PLoS Pathogens, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.ppat.1000984

By:

Gammon, Don B.;
Gowrishankar, Branawan;
Duraffour, Sophie;
Andrei, Graciela;
Upton, Chris;
Evans, David H.

Publication type:

Article

GraphDNA: a Java program for graphical display of DNA composition analyses.

Published in:

BMC Bioinformatics, 2007, v. 8, p. 21, doi. 10.1186/1471-2105-8-21

By:

Thomas, Jamie M;
Horspool, Daniel;
Brown, Gordon;
Tcherepanov, Vasily;
Upton, Chris

Publication type:

Article

Java GUI for InterProScan (JIPS): A tool to help process multiple InterProScans and perform ortholog analysis.

Published in:

BMC Bioinformatics, 2006, v. 7, p. 462, doi. 10.1186/1471-2105-7-462

By:

Syed, Aijazuddin;
Upton, Chris

Publication type:

Article

Recent Hits Acquired by BLAST (ReHAB): A tool to identify new hits in sequence similarity searches.

Published in:

BMC Bioinformatics, 2005, v. 6, p. 23, doi. 10.1186/1471-2105-6-23

By:

Whitney, Joe;
Esteban, David J.;
Upton, Chris

Publication type:

Article

Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments.

Published in:

BMC Bioinformatics, 2004, v. 5, p. 96, doi. 10.1186/1471-2105-5-96

By:

Brodie, Ryan;
Smith, Alex J.;
Roper, Rachel L.;
Tcherepanov, Vasily;
Upton, Chris

Publication type:

Article

ORGANIZATION OF THE MULTIGENE FAMILIES OF AFRICAN SWINE FEVER VIRUS.

Published in:

Fine Focus, 2017, v. 3, n. 2, p. 155

By:

IMBERY, JACOB;
UPTON, CHRIS

Publication type:

Article

Physiotherapy care between hospital and home: patients' views.

Published in:

British Journal of Therapy & Rehabilitation, 2002, v. 9, n. 7, p. 254, doi. 10.12968/bjtr.2002.9.7.13642

By:

MacLeod, Margaret;
Thomson, Hilary-Anne;
Upton, Chris;
Scott, Ruth;
Chesson, Rosemary A.

Publication type:

Article

Host-derived pathogenicity islands in poxviruses.

Published in:

Virology Journal, 2005, v. 2, p. 30, doi. 10.1186/1743-422X-2-30

By:

Da Silva, Melissa;
Upton, Chris

Publication type:

Article

Prediction of Steps in the Evolution of Variola Virus Host Range.

Published in:

PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0091520

By:

Smithson, Chad;
Purdy, Alex;
Verster, Adrian J.;
Upton, Chris

Publication type:

Article

Vaccinia Virus G8R Protein: A Structural Ortholog of Proliferating Cell Nuclear Antigen (PCNA).

Published in:

PLoS ONE, 2009, v. 4, n. 5, p. 1, doi. 10.1371/journal.pone.0005479

By:

Da Silva, Melissa;
Upton, Chris

Publication type:

Article

The first genotype II African swine fever virus isolated in Africa provides insight into the current Eurasian pandemic.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-92593-2

By:

Njau, Emma P.;
Domelevo Entfellner, Jean-Baka;
Machuka, Eunice M.;
Bochere, Edwina N.;
Cleaveland, Sarah;
Shirima, Gabriel M.;
Kusiluka, Lughano J.;
Upton, Chris;
Bishop, Richard P.;
Pelle, Roger;
Okoth, Edward A.

Publication type:

Article

Incontinentia Pigmenti Associated with Cerebral Palsy and Cerebral Leukomalacia: A Case Report and Literature Review.

Published in:

Pediatric Dermatology, 2003, v. 20, n. 6, p. 491, doi. 10.1111/j.1525-1470.2003.20607.x

By:

Shah, Syed N.;
Gibbs, Sam;
upton, Chris J.;
Pickworth, Fred E.;
Garioch, Jennifer J.

Publication type:

Article

JaPaFi: A Novel Program for the Identification of Highly Conserved DNA Sequences.

Published in:

Viruses (1999-4915), 2010, v. 2, n. 9, p. 1867, doi. 10.3390/v2091867

By:

Sadeque, Aliya;
Barsky, Marina;
Marass, Francesco;
Kruczkiewicz, Peter;
Upton, Chris

Publication type:

Article

Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3729-z

By:

Amgarten, Deyvid;
Farage Martins, Layla;
Lombardi, Karen Cristina;
Principal Antunes, Luciana;
Silva de Souza, Ana Paula;
Gonçalves Nicastro, Gianlucca;
Watanabe Kitajima, Elliott;
Bento Quaggio, Ronaldo;
Upton, Chris;
Setubal, João Carlos;
da Silva, Aline Maria

Publication type:

Article

Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.).

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3680-z

By:

Sarker, Subir;
Das, Shubhagata;
Lavers, Jennifer L.;
Hutton, Ian;
Helbig, Karla;
Imbery, Jacob;
Upton, Chris;
Raidal, Shane R.

Publication type:

Article

Using purine skews to predict genes in AT-rich poxviruses.

Published in:

BMC Genomics, 2005, v. 6, p. 22, doi. 10.1186/1471-2164-6-22

By:

Da Silva, Melissa;
Upton, Chris

Publication type:

Article