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Genomic characterization of invasive typhoidal and non-typhoidal Salmonella in southwestern Nigeria.
- Published in:
- PLoS Neglected Tropical Diseases, 2022, v. 16, n. 8, p. 1, doi. 10.1371/journal.pntd.0010716
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- Publication type:
- Article
Circulation of Third-Generation Cephalosporin Resistant Salmonella Typhi in Mumbai, India.
- Published in:
- Clinical Infectious Diseases, 2022, v. 74, n. 12, p. 2234, doi. 10.1093/cid/ciab897
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- Publication type:
- Article
Overcoming Data Bottlenecks in Genomic Pathogen Surveillance.
- Published in:
- Clinical Infectious Diseases, 2021, v. 73, p. S267, doi. 10.1093/cid/ciab785
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- Publication type:
- Article
Train-the-Trainer as an Effective Approach to Building Global Networks of Experts in Genomic Surveillance of Antimicrobial Resistance (AMR).
- Published in:
- Clinical Infectious Diseases, 2021, v. 73, p. S283, doi. 10.1093/cid/ciab770
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- Publication type:
- Article
Complexity of Genomic Epidemiology of Carbapenem-Resistant Klebsiella pneumoniae Isolates in Colombia Urges the Reinforcement of Whole Genome Sequencing-Based Surveillance Programs.
- Published in:
- Clinical Infectious Diseases, 2021, v. 73, p. S290, doi. 10.1093/cid/ciab777
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- Publication type:
- Article
High-Resolution Genomic Profiling of Carbapenem-Resistant Klebsiella pneumoniae Isolates: A Multicentric Retrospective Indian Study.
- Published in:
- Clinical Infectious Diseases, 2021, v. 73, p. S300, doi. 10.1093/cid/ciab767
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- Publication type:
- Article
Clones and Clusters of Antimicrobial-Resistant Klebsiella From Southwestern Nigeria.
- Published in:
- Clinical Infectious Diseases, 2021, v. 73, p. S308, doi. 10.1093/cid/ciab769
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- Publication type:
- Article
Genome Sequencing Identifies Previously Unrecognized Klebsiella pneumoniae Outbreaks in Neonatal Intensive Care Units in the Philippines.
- Published in:
- Clinical Infectious Diseases, 2021, v. 73, p. S316, doi. 10.1093/cid/ciab776
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- Publication type:
- Article
Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch.
- Published in:
- Clinical Infectious Diseases, 2021, v. 73, p. S325, doi. 10.1093/cid/ciab784
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- Publication type:
- Article
Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool.
- Published in:
- Virus Evolution, 2021, v. 7, n. 2, p. 1, doi. 10.1093/ve/veab064
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- Publication type:
- Article
CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance.
- Published in:
- 2021
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- Publication type:
- Editorial
A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23091-2
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- Publication type:
- Article
A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch.
- Published in:
- Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00858-2
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- Publication type:
- Article
SnapperDB: a database solution for routine sequencing analysis of bacterial isolates.
- Published in:
- Bioinformatics, 2018, v. 34, n. 17, p. 3028, doi. 10.1093/bioinformatics/bty212
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- Publication type:
- Article
BugMat and FindNeighbour: command line and server applications for investigating bacterial relatedness.
- Published in:
- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1907-2
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- Publication type:
- Article
Genome analysis following a national increase in Scarlet Fever in England 2014.
- Published in:
- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3603-z
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- Publication type:
- Article
Genomic determination of minimum multilocus sequence typing schemas to represent the genomic phylogeny of Mycoplasma hominis.
- Published in:
- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3284-z
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- Publication type:
- Article
Integration of Genomic and Other Epidemiologic Data to Investigate and Control a Cross-Institutional Outbreak of Streptococcus pyogenes.
- Published in:
- 2016
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- Publication type:
- journal article
Whole-Genome Sequencing for National Surveillance of Shiga Toxin-Producing Escherichia coli O157.
- Published in:
- Clinical Infectious Diseases, 2015, v. 61, n. 3, p. 305, doi. 10.1093/cid/civ318
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- Publication type:
- Article
Whole-Genome Sequencing and Epidemiological Analysis Do Not Provide Evidence for Cross-transmission of Mycobacterium abscessus in a Cohort of Pediatric Cystic Fibrosis Patients.
- Published in:
- Clinical Infectious Diseases, 2015, v. 60, n. 7, p. 1007, doi. 10.1093/cid/ciu967
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- Publication type:
- Article
Effect of Natural Disasters on Local Nonprofit Activity.
- Published in:
- Growth & Change, 2014, v. 45, n. 4, p. 590, doi. 10.1111/grow.12056
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- Publication type:
- Article
Evidence that the accuracy of self-reported lead emissions data improved: A puzzle and discussion.
- Published in:
- Journal of Risk & Uncertainty, 2014, v. 49, n. 3, p. 235, doi. 10.1007/s11166-014-9204-1
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- Publication type:
- Article
Enteroaggregative Escherichia coli Have Evolved Independently as Distinct Complexes within the E. coli Population with Varying Ability to Cause Disease.
- Published in:
- PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0112967
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- Publication type:
- Article
An Investigation of the Diversity of Strains of Enteroaggregative <i>Escherichia coli</i> Isolated from Cases Associated with a Large Multi-Pathogen Foodborne Outbreak in the UK.
- Published in:
- PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0098103
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- Publication type:
- Article
snp-search: simple processing, manipulation and searching of SNPs from high-throughput sequencing.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-326
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- Publication type:
- Article
Comparison of the Legionella pneumophila population structure as determined by sequence-based typing and whole genome sequencing.
- Published in:
- BMC Microbiology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2180-13-302
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- Publication type:
- Article
Multiple-locus variable-number tandem-repeat analysis of Streptococcus pneumoniae and comparison with multiple loci sequence typing.
- Published in:
- BMC Microbiology, 2012, v. 12, n. 1, p. 1, doi. 10.1186/1471-2180-12-241
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- Publication type:
- Article
Evolutionary Pathways of the Pandemic Influenza A (H1N1) 2009 in the UK.
- Published in:
- PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0023779
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- Publication type:
- Article
Whole-genome comparison of two Acinetobacter baumannii isolates from a single patient, where resistance developed during tigecycline therapy.
- Published in:
- Journal of Antimicrobial Chemotherapy (JAC), 2011, v. 66, n. 7, p. 1499, doi. 10.1093/jac/dkr168
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- Publication type:
- Article
The Impact of Pandemic Influenza H1N1 on Health-Related Quality of Life: A Prospective Population-Based Study.
- Published in:
- PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0017030
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- Publication type:
- Article
Mathematical Modelling of Mycobacterium tuberculosis VNTR Loci Estimates a Very Slow Mutation Rate for the Repeats.
- Published in:
- Journal of Molecular Evolution, 2008, v. 66, n. 6, p. 565, doi. 10.1007/s00239-008-9104-6
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- Publication type:
- Article
VNTRDB: a bacterial variable number tandem repeat locus database.
- Published in:
- Nucleic Acids Research, 2007, v. 35, p. d416, doi. 10.1093/nar/gkl872
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- Publication type:
- Article
Pneumocystis carinii telomere repeats are composed of TTAGGG and the subtelomeric sequence contains a gene encoding the major surface glycoprotein.
- Published in:
- Molecular Microbiology, 1996, v. 19, n. 2, p. 273, doi. 10.1046/j.1365-2958.1996.374904.x
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- Publication type:
- Article
Genetic Diversity at the Internal Transcribed Spacer Regions of the rRNA Operon among Isolates of Pneumocystis carinii from AIDS Patients with Recurrent Pneumonia.
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- Journal of Infectious Diseases, 1996, v. 174, n. 1, p. 141, doi. 10.1093/infdis/174.1.141
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- Publication type:
- Article