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Segregation of α- and β-Globin Gene Cluster in Vertebrate Evolution: Chance or Necessity?
Published in:
Biochemistry (00062979), 2022, v. 87, n. 9, p. 1035, doi. 10.1134/S0006297922090140
By:
- Iarovaia, Olga V.;
- Ulianov, Sergey V.;
- Ioudinkova, Elena S.;
- Razin, Sergey V.
Publication type:
Article
A Kaleidoscope of Keratin Gene Expression and the Mosaic of Its Regulatory Mechanisms.
Published in:
International Journal of Molecular Sciences, 2023, v. 24, n. 6, p. 5603, doi. 10.3390/ijms24065603
By:
- Kalabusheva, Ekaterina P.;
- Shtompel, Anastasia S.;
- Rippa, Alexandra L.;
- Ulianov, Sergey V.;
- Razin, Sergey V.;
- Vorotelyak, Ekaterina A.
Publication type:
Article
Recurrent Translocations in Topoisomerase Inhibitor-Related Leukemia Are Determined by the Features of DNA Breaks Rather Than by the Proximity of the Translocating Genes.
Published in:
International Journal of Molecular Sciences, 2022, v. 23, n. 17, p. 9824, doi. 10.3390/ijms23179824
By:
- Lomov, Nikolai A.;
- Viushkov, Vladimir S.;
- Ulianov, Sergey V.;
- Gavrilov, Alexey A.;
- Alexeyevsky, Daniil A.;
- Artemov, Artem V.;
- Razin, Sergey V.;
- Rubtsov, Mikhail A.
Publication type:
Article
Pluripotency factors determine gene expression repertoire at zygotic genome activation.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28434-1
By:
- Gao, Meijiang;
- Veil, Marina;
- Rosenblatt, Marcus;
- Riesle, Aileen Julia;
- Gebhard, Anna;
- Hass, Helge;
- Buryanova, Lenka;
- Yampolsky, Lev Y.;
- Grüning, Björn;
- Ulianov, Sergey V.;
- Timmer, Jens;
- Onichtchouk, Daria
Publication type:
Article
Hi-C analysis of genome folding in individual Drosophila cells.
Published in:
Biopolymers & Cell, 2019, v. 35, n. 3, p. 172, doi. 10.7124/bc.0009AA
By:
- Ulianov, Sergey V.;
- Zakharova, Vlada V.;
- Galitsyna, Aleksandra A.;
- Polovnikov, Kirill E.;
- Khrameeva, Ekaterina E.;
- Logacheva, Mariya D.;
- Mikhaleva, Elena A.;
- Vassetzky, Yegor S.;
- Gavrilov, Aleksey A.;
- Shevelev, Yuri Y.;
- Nechaev, Sergey K.;
- Razin, Sergey V.
Publication type:
Article
Hi-C Metagenomics in the ICU: Exploring Clinically Relevant Features of Gut Microbiome in Chronically Critically Ill Patients.
Published in:
Frontiers in Microbiology, 2022, v. 12, p. 1, doi. 10.3389/fmicb.2021.770323
By:
- Ivanova, Valeriia;
- Chernevskaya, Ekaterina;
- Vasiluev, Petr;
- Ivanov, Artem;
- Tolstoganov, Ivan;
- Shafranskaya, Daria;
- Ulyantsev, Vladimir;
- Korobeynikov, Anton;
- Razin, Sergey V.;
- Beloborodova, Natalia;
- Ulianov, Sergey V.;
- Tyakht, Alexander
Publication type:
Article
Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-09185-y
By:
- Ulianov, Sergey V.;
- Doronin, Semen A.;
- Khrameeva, Ekaterina E.;
- Kos, Pavel I.;
- Luzhin, Artem V.;
- Starikov, Sergei S.;
- Galitsyna, Aleksandra A.;
- Nenasheva, Valentina V.;
- Ilyin, Artem A.;
- Flyamer, Ilya M.;
- Mikhaleva, Elena A.;
- Logacheva, Mariya D.;
- Gelfand, Mikhail S.;
- Chertovich, Alexander V.;
- Gavrilov, Alexey A.;
- Razin, Sergey V.;
- Shevelyov, Yuri Y.
Publication type:
Article
Perspectives for the reconstruction of 3D chromatin conformation using single cell Hi-C data.
Published in:
PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009546
By:
- Kos, Pavel I.;
- Galitsyna, Aleksandra A.;
- Ulianov, Sergey V.;
- Gelfand, Mikhail S.;
- Razin, Sergey V.;
- Chertovich, Alexander V.
Publication type:
Article
Evolution of the Genome 3D Organization: Comparison of Fused and Segregated Globin Gene Clusters.
Published in:
Molecular Biology & Evolution, 2017, v. 34, n. 6, p. 1492, doi. 10.1093/molbev/msx100
By:
- Kovina, Anastasia P.;
- Petrova, Natalia V.;
- Gushchanskaya, Ekaterina S.;
- Dolgushin, Konstantin V.;
- Gerasimov, Evgeny S.;
- Galitsyna, Aleksandra A.;
- Penin, Alexey A.;
- Flyamer, Ilya M.;
- Ioudinkova, Elena S.;
- Gavrilov, Alexey A.;
- Vassetzky, Yegor S.;
- Ulianov, Sergey V.;
- Iarovaia, Olga V.;
- Razin, Sergey V.
Publication type:
Article
Activation of the alpha-globin gene expression correlates with dramatic upregulation of nearby non-globin genes and changes in local and large-scale chromatin spatial structure.
Published in:
Epigenetics & Chromatin, 2017, v. 10, p. 1, doi. 10.1186/s13072-017-0142-4
By:
- Ulianov, Sergey V.;
- Galitsyna, Aleksandra A.;
- Flyamer, Ilya M.;
- Golov, Arkadiy K.;
- Khrameeva, Ekaterina E.;
- Imakaev, Maxim V.;
- Abdennur, Nezar A.;
- Gelfand, Mikhail S.;
- Gavrilov, Alexey A.;
- Razin, Sergey V.
Publication type:
Article
Spatial organization of the chicken beta-globin gene domain in erythroid cells of embryonic and adult lineages.
Published in:
Epigenetics & Chromatin, 2012, v. 5, n. 1, p. 16, doi. 10.1186/1756-8935-5-16
By:
- Ulianov, Sergey V.;
- Gavrilov, Alexey A.;
- Razin, Sergey V.
Publication type:
Article
Quantitative differences in TAD border strength underly the TAD hierarchy in Drosophila chromosomes.
Published in:
Journal of Cellular Biochemistry, 2019, v. 120, n. 3, p. 4494, doi. 10.1002/jcb.27737
By:
- Luzhin, Artem V.;
- Flyamer, Ilya M.;
- Khrameeva, Ekaterina E.;
- Ulianov, Sergey V.;
- Razin, Sergey V.;
- Gavrilov, Alexey A.
Publication type:
Article
HiConfidence: a novel approach uncovering the biological signal in Hi-C data affected by technical biases.
Published in:
Briefings in Bioinformatics, 2023, v. 24, n. 2, p. 1, doi. 10.1093/bib/bbad044
By:
- Kobets, Victoria A;
- Ulianov, Sergey V;
- Galitsyna, Aleksandra A;
- Doronin, Semen A;
- Mikhaleva, Elena A;
- Gelfand, Mikhail S;
- Shevelyov, Yuri Y;
- Razin, Sergey V;
- Khrameeva, Ekaterina E
Publication type:
Article
LASCA: loop and significant contact annotation pipeline.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-85970-4
By:
- Luzhin, Artem V.;
- Golov, Arkadiy K.;
- Gavrilov, Alexey A.;
- Velichko, Artem K.;
- Ulianov, Sergey V.;
- Razin, Sergey V.;
- Kantidze, Omar L.
Publication type:
Article
Genome-Directed Cell Nucleus Assembly.
Published in:
Biology (2079-7737), 2022, v. 11, n. 5, p. 708, doi. 10.3390/biology11050708
By:
- Razin, Sergey V.;
- Ulianov, Sergey V.
Publication type:
Article
Divide and Rule: Phase Separation in Eukaryotic Genome Functioning.
Published in:
Cells (2073-4409), 2020, v. 9, n. 11, p. 2480, doi. 10.3390/cells9112480
By:
- Razin, Sergey V.;
- Ulianov, Sergey V.
Publication type:
Article
The Nuclear Lamina as an Organizer of Chromosome Architecture.
Published in:
Cells (2073-4409), 2019, v. 8, n. 2, p. 136, doi. 10.3390/cells8020136
By:
- Shevelyov, Yuri Y.;
- Ulianov, Sergey V.
Publication type:
Article
Extensive long-range polycomb interactions and weak compartmentalization are hallmarks of human neuronal 3D genome.
Published in:
Nucleic Acids Research, 2024, v. 52, n. 11, p. 6234, doi. 10.1093/nar/gkae271
By:
- Pletenev, Ilya A;
- Bazarevich, Maria;
- Zagirova, Diana R;
- Kononkova, Anna D;
- Cherkasov, Alexander V;
- Efimova, Olga I;
- Tiukacheva, Eugenia A;
- Morozov, Kirill V;
- Ulianov, Kirill A;
- Komkov, Dmitriy;
- Tvorogova, Anna V;
- Golimbet, Vera E;
- Kondratyev, Nikolay V;
- Razin, Sergey V;
- Khaitovich, Philipp;
- Ulianov, Sergey V;
- Khrameeva, Ekaterina E
Publication type:
Article
SETDB1 fuels the lung cancer phenotype by modulating epigenome, 3D genome organization and chromatin mechanical properties.
Published in:
Nucleic Acids Research, 2022, v. 50, n. 8, p. 4389, doi. 10.1093/nar/gkac234
By:
- Zakharova, Vlada V;
- Magnitov, Mikhail D;
- Del Maestro, Laurence;
- Ulianov, Sergey V;
- Glentis, Alexandros;
- Uyanik, Burhan;
- Williart, Alice;
- Karpukhina, Anna;
- Demidov, Oleg;
- Joliot, Veronique;
- Vassetzky, Yegor S;
- Mège, René-Marc;
- Piel, Matthieu;
- Razin, Sergey V;
- Ait-Si-Ali, Slimane
Publication type:
Article
Comparison of genome architecture at two stages of male germline cell differentiation in Drosophila.
Published in:
Nucleic Acids Research, 2022, v. 50, n. 6, p. 3203, doi. 10.1093/nar/gkac109
By:
- Ilyin, Artem A;
- Kononkova, Anna D;
- Golova, Anastasia V;
- Shloma, Viktor V;
- Olenkina, Oxana M;
- Nenasheva, Valentina V;
- Abramov, Yuri A;
- Kotov, Alexei A;
- Maksimov, Daniil A;
- Laktionov, Petr P;
- Pindyurin, Alexey V;
- Galitsyna, Aleksandra A;
- Ulianov, Sergey V;
- Khrameeva, Ekaterina E;
- Gelfand, Mikhail S;
- Belyakin, Stepan N;
- Razin, Sergey V;
- Shevelyov, Yuri Y
Publication type:
Article
Suppression of liquid–liquid phase separation by 1,6-hexanediol partially compromises the 3D genome organization in living cells.
Published in:
Nucleic Acids Research, 2021, v. 49, n. 18, p. 10524, doi. 10.1093/nar/gkab249
By:
- Ulianov, Sergey V;
- Velichko, Artem K;
- Magnitov, Mikhail D;
- Luzhin, Artem V;
- Golov, Arkadiy K;
- Ovsyannikova, Natalia;
- Kireev, Igor I;
- Gavrikov, Alexey S;
- Mishin, Alexander S;
- Garaev, Azat K;
- Tyakht, Alexander V;
- Gavrilov, Alexey A;
- Kantidze, Omar L;
- Razin, Sergey V
Publication type:
Article
Studying RNA–DNA interactome by Red-C identifies noncoding RNAs associated with various chromatin types and reveals transcription dynamics.
Published in:
Nucleic Acids Research, 2020, v. 48, n. 12, p. 6699, doi. 10.1093/nar/gkaa457
By:
- Gavrilov, Alexey A;
- Zharikova, Anastasiya A;
- Galitsyna, Aleksandra A;
- Luzhin, Artem V;
- Rubanova, Natalia M;
- Golov, Arkadiy K;
- Petrova, Nadezhda V;
- Logacheva, Maria D;
- Kantidze, Omar L;
- Ulianov, Sergey V;
- Magnitov, Mikhail D;
- Mironov, Andrey A;
- Razin, Sergey V
Publication type:
Article
Unraveling the Polysaccharide Biosynthesis Potential of Ganoderma lucidum : A Chromosome-Level Assembly Using Hi-C Sequencing.
Published in:
Journal of Fungi, 2023, v. 9, n. 10, p. 1020, doi. 10.3390/jof9101020
By:
- Sonets, Ignat V.;
- Dovidchenko, Nikita V.;
- Ulianov, Sergey V.;
- Yarina, Maria S.;
- Koshechkin, Stanislav I.;
- Razin, Sergey V.;
- Krasnopolskaya, Larissa M.;
- Tyakht, Alexander V.
Publication type:
Article
Single-cell Hi-C bridges microscopy and genome-wide sequencing approaches to study 3D chromatin organization.
Published in:
BioEssays, 2017, v. 39, n. 10, p. n/a, doi. 10.1002/bies.201700104
By:
- Ulianov, Sergey V.;
- Razin, Sergey V.;
- Tachibana-Konwalski, Kikue
Publication type:
Article
Enhancer Function in the 3D Genome.
Published in:
Genes, 2023, v. 14, n. 6, p. 1277, doi. 10.3390/genes14061277
By:
- Razin, Sergey V.;
- Ulianov, Sergey V.;
- Iarovaia, Olga V.
Publication type:
Article
Trisomies Reorganize Human 3D Genome.
Published in:
International Journal of Molecular Sciences, 2023, v. 24, n. 22, p. 16044, doi. 10.3390/ijms242216044
By:
- Zhegalova, Irina V.;
- Vasiluev, Petr A.;
- Flyamer, Ilya M.;
- Shtompel, Anastasia S.;
- Glazyrina, Eugene;
- Shilova, Nadezda;
- Minzhenkova, Marina;
- Markova, Zhanna;
- Petrova, Natalia V.;
- Dashinimaev, Erdem B.;
- Razin, Sergey V.;
- Ulianov, Sergey V.
Publication type:
Article
Pentad: a tool for distance-dependent analysis of Hi-C interactions within and between chromatin compartments.
Published in:
BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04654-6
By:
- Magnitov, Mikhail D.;
- Garaev, Azat K.;
- Tyakht, Alexander V.;
- Ulianov, Sergey V.;
- Razin, Sergey V.
Publication type:
Article
Benchmark of software tools for prokaryotic chromosomal interaction domain identification.
Published in:
Bioinformatics, 2020, v. 36, n. 17, p. 4560, doi. 10.1093/bioinformatics/btaa555
By:
- Magnitov, Mikhail D;
- Kuznetsova, Veronika S;
- Ulianov, Sergey V;
- Razin, Sergey V;
- Tyakht, Alexander V
Publication type:
Article
RNA-DNA interactomes of three prokaryotes uncovered by proximity ligation.
Published in:
Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-04853-8
By:
- Gavrilov, Alexey A.;
- Evko, Grigory S.;
- Galitsyna, Aleksandra A.;
- Ulianov, Sergey V.;
- Kochetkova, Tatiana V.;
- Merkel, Alexander Y.;
- Tyakht, Alexander V.;
- Razin, Sergey V.
Publication type:
Article
Order and stochasticity in the folding of individual Drosophila genomes.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-20292-z
By:
- Ulianov, Sergey V.;
- Zakharova, Vlada V.;
- Galitsyna, Aleksandra A.;
- Kos, Pavel I.;
- Polovnikov, Kirill E.;
- Flyamer, Ilya M.;
- Mikhaleva, Elena A.;
- Khrameeva, Ekaterina E.;
- Germini, Diego;
- Logacheva, Mariya D.;
- Gavrilov, Alexey A.;
- Gorsky, Alexander S.;
- Nechaev, Sergey K.;
- Gelfand, Mikhail S.;
- Vassetzky, Yegor S.;
- Chertovich, Alexander V.;
- Shevelyov, Yuri Y.;
- Razin, Sergey V.
Publication type:
Article

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