Works by Ule, Jernej

Results: 77
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    Nova regulates brain-specific splicing to shape the synapse.

    Published in:
    Nature Genetics, 2005, v. 37, n. 8, p. 844, doi. 10.1038/ng1610
    By:
    • Ule, Jernej;
    • Ule, Aljaž;
    • Spencer, Joanna;
    • Williams, Alan;
    • Jing-Shan Hu;
    • Cline, Melissa;
    • Hui Wang;
    • Clark, Tyson;
    • Fraser, Claire;
    • Ruggiu, Matteo;
    • Zeeberg, Barry R.;
    • Kane, David;
    • Weinstein, John N.;
    • Blume, John;
    • Darnell, Robert B.
    Publication type:
    Article
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    HIF-driven SF3B1 induces KHK-C to enforce fructolysis and heart disease.

    Published in:
    Nature, 2015, v. 522, n. 7557, p. 444, doi. 10.1038/nature14508
    By:
    • Mirtschink, Peter;
    • Krishnan, Jaya;
    • Grimm, Fiona;
    • Sarre, Alexandre;
    • Hörl, Manuel;
    • Kayikci, Melis;
    • Fankhauser, Niklaus;
    • Christinat, Yann;
    • Cortijo, Cédric;
    • Feehan, Owen;
    • Vukolic, Ana;
    • Sossalla, Samuel;
    • Stehr, Sebastian N.;
    • Ule, Jernej;
    • Zamboni, Nicola;
    • Pedrazzini, Thierry;
    • Krek, Wilhelm
    Publication type:
    Article
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    Recursive splicing in long vertebrate genes.

    Published in:
    Nature, 2015, v. 521, n. 7552, p. 371, doi. 10.1038/nature14466
    By:
    • Sibley, Christopher R.;
    • Emmett, Warren;
    • Blazquez, Lorea;
    • Faro, Ana;
    • Haberman, Nejc;
    • Briese, Michael;
    • Trabzuni, Daniah;
    • Ryten, Mina;
    • Weale, Michael E.;
    • Hardy, John;
    • Modic, Miha;
    • Curk, Tomaž;
    • Wilson, Stephen W.;
    • Plagnol, Vincent;
    • Ule, Jernej
    Publication type:
    Article
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    RNA modifications detection by comparative Nanopore direct RNA sequencing.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27393-3
    By:
    • Leger, Adrien;
    • Amaral, Paulo P.;
    • Pandolfini, Luca;
    • Capitanchik, Charlotte;
    • Capraro, Federica;
    • Miano, Valentina;
    • Migliori, Valentina;
    • Toolan-Kerr, Patrick;
    • Sideri, Theodora;
    • Enright, Anton J.;
    • Tzelepis, Konstantinos;
    • van Werven, Folkert J.;
    • Luscombe, Nicholas M.;
    • Barbieri, Isaia;
    • Ule, Jernej;
    • Fitzgerald, Tomas;
    • Birney, Ewan;
    • Leonardi, Tommaso;
    • Kouzarides, Tony
    Publication type:
    Article
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    Widespread 3′UTR capped RNAs derive from G-rich regions in proximity to AGO2 binding sites.

    Published in:
    BMC Biology, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12915-024-02032-7
    By:
    • Haberman, Nejc;
    • Digby, Holly;
    • Faraway, Rupert;
    • Cheung, Rebecca;
    • Chakrabarti, Anob M.;
    • Jobbins, Andrew M.;
    • Parr, Callum;
    • Yasuzawa, Kayoko;
    • Kasukawa, Takeya;
    • Yip, Chi Wai;
    • Kato, Masaki;
    • Takahashi, Hazuki;
    • Carninci, Piero;
    • Vernia, Santiago;
    • Ule, Jernej;
    • Sibley, Christopher R.;
    • Martinez-Sanchez, Aida;
    • Lenhard, Boris
    Publication type:
    Article
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    Interrogation of RNA-protein interaction dynamics in bacterial growth.

    Published in:
    Molecular Systems Biology, 2024, v. 20, n. 5, p. 573, doi. 10.1038/s44320-024-00031-y
    By:
    • Monti, Mie;
    • Herman, Reyme;
    • Mancini, Leonardo;
    • Capitanchik, Charlotte;
    • Davey, Karen;
    • Dawson, Charlotte S;
    • Ule, Jernej;
    • Thomas, Gavin H;
    • Willis, Anne E;
    • Lilley, Kathryn S;
    • Villanueva, Eneko
    Publication type:
    Article
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    Transcriptome-wide RNA binding analysis of C9orf72 poly(PR) dipeptides.

    Published in:
    Life Science Alliance, 2023, v. 6, n. 9, p. 1, doi. 10.26508/lsa.202201824
    By:
    • Balendra, Rubika;
    • de los Mozos, Igor Ruiz;
    • Odeh, Hana M.;
    • Glaria, Idoia;
    • Milioto, Carmelo;
    • Wilson, Katherine M.;
    • Ule, Agnieszka M.;
    • Hallegger, Martina;
    • Masino, Laura;
    • Martin, Stephen;
    • Patani, Rickie;
    • Shorter, James;
    • Ule, Jernej;
    • Isaacs, Adrian M.
    Publication type:
    Article
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    Characterizing the RNA targets and position-dependent splicing regulation by TDP-43.

    Published in:
    Nature Neuroscience, 2011, v. 14, n. 4, p. 452, doi. 10.1038/nn.2778
    By:
    • Tollervey, James R.;
    • Curk, Tomaž;
    • Rogelj, Boris;
    • Briese, Michael;
    • Cereda, Matteo;
    • Kayikci, Melis;
    • König, Julian;
    • Hortobágyi, Tibor;
    • Nishimura, Agnes L.;
    • Župunski, Vera;
    • Patani, Rickie;
    • Chandran, Siddharthan;
    • Rot, Gregor;
    • Zupan, Blaž;
    • Shaw, Christopher E.;
    • Ule, Jernej
    Publication type:
    Article
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    Intron retention and nuclear loss of SFPQ are molecular hallmarks of ALS.

    Published in:
    Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-04373-8
    By:
    • Luisier, Raphaelle;
    • Tyzack, Giulia E.;
    • Hall, Claire E.;
    • Mitchell, Jamie S.;
    • Devine, Helen;
    • Taha, Doaa M.;
    • Malik, Bilal;
    • Meyer, Ione;
    • Greensmith, Linda;
    • Newcombe, Jia;
    • Ule, Jernej;
    • Luscombe, Nicholas M.;
    • Patani, Rickie
    Publication type:
    Article
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    RNA-Binding Protein Musashi1 Is a Central Regulator of Adhesion Pathways in Glioblastoma.

    Published in:
    Molecular & Cellular Biology, 2015, v. 35, n. 17, p. 2965, doi. 10.1128/MCB.00410-15
    By:
    • Uren, Philip J.;
    • Vo, Dat T.;
    • de Araujo, Patricia Rosa;
    • Pötschke, Rebecca;
    • Burns, Suzanne C.;
    • Bahrami-Samani, Emad;
    • Mei Qiao;
    • de Sousa Abreu, Raquel;
    • Nakaya, Helder I.;
    • Correa, Bruna R.;
    • Kühnöl, Caspar;
    • Ule, Jernej;
    • Martindale, Jennifer L.;
    • Abdelmohsen, Kotb;
    • Gorospe, Myriam;
    • Smith, Andrew D.;
    • Penalva, Luiz O. F.
    Publication type:
    Article
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    Axonal RNA localization is essential for long-term memory.

    Published in:
    Nature Communications, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41467-025-57651-7
    By:
    • de Queiroz, Bruna R.;
    • Laghrissi, Hiba;
    • Rajeev, Seetha;
    • Blot, Lauren;
    • De Graeve, Fabienne;
    • Dehecq, Marine;
    • Hallegger, Martina;
    • Dag, Ugur;
    • Dunoyer de Segonzac, Marion;
    • Ramialison, Mirana;
    • Cazevieille, Chantal;
    • Keleman, Krystyna;
    • Ule, Jernej;
    • Hubstenberger, Arnaud;
    • Besse, Florence
    Publication type:
    Article
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    NEAT1 modulates the TIRR/53BP1 complex to maintain genome integrity.

    Published in:
    Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52862-w
    By:
    • Kilgas, Susan;
    • Syed, Aleem;
    • Toolan-Kerr, Patrick;
    • Swift, Michelle L.;
    • Roychoudhury, Shrabasti;
    • Sarkar, Aniruddha;
    • Wilkins, Sarah;
    • Quigley, Mikayla;
    • Poetsch, Anna R.;
    • Botuyan, Maria Victoria;
    • Cui, Gaofeng;
    • Mer, Georges;
    • Ule, Jernej;
    • Drané, Pascal;
    • Chowdhury, Dipanjan
    Publication type:
    Article
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    The RNA-binding protein HuR is essential for the B cell antibody response.

    Published in:
    Nature Immunology, 2015, v. 16, n. 4, p. 415, doi. 10.1038/ni.3115
    By:
    • Diaz-Muñoz, Manuel D;
    • Bell, Sarah E;
    • Fairfax, Kirsten;
    • Monzon-Casanova, Elisa;
    • Cunningham, Adam F;
    • Gonzalez-Porta, Mar;
    • Andrews, Simon R;
    • Bunik, Victoria I;
    • Zarnack, Kathi;
    • Curk, Tomaž;
    • Heggermont, Ward A;
    • Heymans, Stephane;
    • Gibson, Gary E;
    • Kontoyiannis, Dimitris L;
    • Ule, Jernej;
    • Turner, Martin
    Publication type:
    Article
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    N6-methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in yeast.

    Published in:
    eLife, 2022, p. 1, doi. 10.7554/eLife.84034
    By:
    • Varier, Radhika A.;
    • Sideri, Theodora;
    • Capitanchik, Charlotte;
    • Manova, Zornitsa;
    • Calvani, Enrica;
    • Rossi, Alice;
    • Edupuganti, Raghu R.;
    • Ensinck, Imke;
    • Chan, Vincent W. C.;
    • Patel, Harshil;
    • Kirkpatrick, Joanna;
    • Faull, Peter;
    • Snijders, Ambrosius P.;
    • Vermeulen, Michiel;
    • Ralser, Markus;
    • Ule, Jernej;
    • Luscombe, Nicholas M.;
    • van Werven, Folkert J.
    Publication type:
    Article
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    The paralogues MAGOH and MAGOHB are oncogenic factors in high-grade gliomas and safeguard the splicing of cell division and cell cycle genes.

    Published in:
    RNA Biology, 2023, v. 20, n. 1, p. 311, doi. 10.1080/15476286.2023.2221511
    By:
    • Barreiro, Rodrigo A. S.;
    • Guardia, Gabriela D. A.;
    • Meliso, Fabiana M.;
    • Lei, Xiufen;
    • Li, Wei-Qing;
    • Savio, Andre;
    • Fellermeyer, Martin;
    • Conceição, Helena B.;
    • Mercuri, Rafael L. V.;
    • Landry, Tesha;
    • Qiao, Mei;
    • Blazquez, Lorea;
    • Ule, Jernej;
    • Penalva, Luiz O.F.;
    • Galante, Pedro A. F.
    Publication type:
    Article