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Incorporating amino acids composition and functional domains for identifying bacterial toxin proteins.
- Published in:
- 2014
- By:
- Publication type:
- Journal Article
Incorporating Amino Acids Composition and Functional Domains for Identifying Bacterial Toxin Proteins.
- Published in:
- BioMed Research International, 2014, v. 2014, p. 1, doi. 10.1155/2014/972692
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- Publication type:
- Article
Systematic Expression Profiling Analysis Identifies Specific MicroRNA-Gene Interactions that May Differentiate between Active and Latent Tuberculosis Infection.
- Published in:
- BioMed Research International, 2014, v. 2014, p. 1, doi. 10.1155/2014/895179
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- Publication type:
- Article
A new scheme for strain typing of methicillin-resistant Staphylococcus aureus on the basis of matrix-assisted laser desorption ionization time-of-flight mass spectrometry by using machine learning approach.
- Published in:
- PLoS ONE, 2018, v. 13, n. 3, p. 1, doi. 10.1371/journal.pone.0194289
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- Publication type:
- Article
UbiSite: incorporating two-layered machine learning method with substrate motifs to predict ubiquitin-conjugation site on lysines.
- Published in:
- BMC Systems Biology, 2016, v. 10, p. 49, doi. 10.1186/s12918-015-0246-z
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- Publication type:
- Article
A new scheme to discover functional associations and regulatory networks of E3 ubiquitin ligases.
- Published in:
- BMC Systems Biology, 2016, v. 10, p. 27, doi. 10.1186/s12918-015-0244-1
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- Publication type:
- Article
AMPActiPred: A three‐stage framework for predicting antibacterial peptides and activity levels with deep forest.
- Published in:
- Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 6, p. 1, doi. 10.1002/pro.5006
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- Publication type:
- Article
DeepAFP: An effective computational framework for identifying antifungal peptides based on deep learning.
- Published in:
- Protein Science: A Publication of the Protein Society, 2023, v. 32, n. 10, p. 1, doi. 10.1002/pro.4758
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- Publication type:
- Article
GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group.
- Published in:
- BMC Genomics, 2012, v. 13, n. Suppl 1, p. 1, doi. 10.1186/1471-2164-13-S1-S3
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- Publication type:
- Article
A representation and deep learning model for annotating ubiquitylation sentences stating E3 ligase - substrate interaction.
- Published in:
- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04435-7
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- Publication type:
- Article
Incorporating support vector machine with sequential minimal optimization to identify anticancer peptides.
- Published in:
- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-03965-4
- By:
- Publication type:
- Article
PlantPAN 4.0: updated database for identifying conserved non-coding sequences and exploring dynamic transcriptional regulation in plant promoters.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. D1, p. D1569, doi. 10.1093/nar/gkad945
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- Publication type:
- Article
Machine Learning-Based Characterization and Identification of Tertiary Lymphoid Structures Using Spatial Transcriptomics Data.
- Published in:
- International Journal of Molecular Sciences, 2024, v. 25, n. 7, p. 3887, doi. 10.3390/ijms25073887
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- Publication type:
- Article
Interpretable Multi-Scale Deep Learning for RNA Methylation Analysis across Multiple Species.
- Published in:
- International Journal of Molecular Sciences, 2024, v. 25, n. 5, p. 2869, doi. 10.3390/ijms25052869
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- Publication type:
- Article
A Robust Drug–Target Interaction Prediction Framework with Capsule Network and Transfer Learning.
- Published in:
- International Journal of Molecular Sciences, 2023, v. 24, n. 18, p. 14061, doi. 10.3390/ijms241814061
- By:
- Publication type:
- Article
StackTHPred: Identifying Tumor-Homing Peptides through GBDT-Based Feature Selection with Stacking Ensemble Architecture.
- Published in:
- International Journal of Molecular Sciences, 2023, v. 24, n. 12, p. 10348, doi. 10.3390/ijms241210348
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- Publication type:
- Article
Accelerating the Discovery of Anticancer Peptides through Deep Forest Architecture with Deep Graphical Representation.
- Published in:
- International Journal of Molecular Sciences, 2023, v. 24, n. 5, p. 4328, doi. 10.3390/ijms24054328
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- Publication type:
- Article
Towards Accurate Identification of Antibiotic-Resistant Pathogens through the Ensemble of Multiple Preprocessing Methods Based on MALDI-TOF Spectra.
- Published in:
- International Journal of Molecular Sciences, 2023, v. 24, n. 2, p. 998, doi. 10.3390/ijms24020998
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- Publication type:
- Article
Application of Computational Biology and Artificial Intelligence in Drug Design.
- Published in:
- International Journal of Molecular Sciences, 2022, v. 23, n. 21, p. 13568, doi. 10.3390/ijms232113568
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- Publication type:
- Article
Revealing the Immune Heterogeneity between Systemic Lupus Erythematosus and Rheumatoid Arthritis Based on Multi-Omics Data Analysis.
- Published in:
- International Journal of Molecular Sciences, 2022, v. 23, n. 9, p. 5166, doi. 10.3390/ijms23095166
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- Publication type:
- Article
Characterization and Identification of Natural Antimicrobial Peptides on Different Organisms.
- Published in:
- International Journal of Molecular Sciences, 2020, v. 21, n. 3, p. 986, doi. 10.3390/ijms21030986
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- Publication type:
- Article
Poly-γ-glutamic Acid Synthesis, Gene Regulation, Phylogenetic Relationships, and Role in Fermentation.
- Published in:
- International Journal of Molecular Sciences, 2017, v. 18, n. 12, p. 2644, doi. 10.3390/ijms18122644
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- Publication type:
- Article
Gene expression profiling identifies candidate biomarkers for active and latent tuberculosis.
- Published in:
- BMC Bioinformatics, 2016, v. 17, p. 27, doi. 10.1186/s12859-015-0848-x
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- Publication type:
- Article
A two-layered machine learning method to identify protein O-GlcNAcylation sites with OGlcNAc transferase substrate motifs.
- Published in:
- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S10
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- Publication type:
- Article
Characterization and identification of ubiquitin conjugation sites with E3 ligase recognition specificities.
- Published in:
- BMC Bioinformatics, 2015, v. 16, p. S1, doi. 10.1186/1471-2105-16-S1-S1
- By:
- Publication type:
- Article
ViralmiR: a support-vector-machine-based method for predicting viral microRNA precursors.
- Published in:
- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S1-S9
- By:
- Publication type:
- Article
An interpretable rule-based diagnostic classification of diabetic nephropathy among type 2 diabetes patients.
- Published in:
- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S1-S5
- By:
- Publication type:
- Article
Characterization and identification of protein O-GlcNAcylation sites with substrate specificity.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. Suppl 16, p. 1, doi. 10.1186/1471-2105-15-S16-S1
- By:
- Publication type:
- Article
Incorporating substrate sequence motifs and spatial amino acid composition to identify kinase-specific phosphorylation sites on protein three-dimensional structures.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. Suppl 16, p. 1, doi. 10.1186/1471-2105-14-S16-S2
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- Publication type:
- Article
ViralPhos: incorporating a recursively statistical method to predict phosphorylation sites on virus proteins.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. Suppl 16, p. 1, doi. 10.1186/1471-2105-14-S16-S10
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- Publication type:
- Article
Investigation and identification of protein γ-glutamyl carboxylation sites.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S10
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- Publication type:
- Article
PlantPhos: using maximal dependence decomposition to identify plant phosphorylation sites with substrate site specificity.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. 1, p. 261, doi. 10.1186/1471-2105-12-261
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- Publication type:
- Article
Incorporating significant amino acid pairs to identify O-linked glycosylation sites on transmembrane proteins and nontransmembrane proteins.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 536, doi. 10.1186/1471-2105-11-536
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- Publication type:
- Article
On the force field optimisation of β-lactam cores using the force field Toolkit.
- Published in:
- Journal of Computer-Aided Molecular Design, 2022, v. 36, n. 7, p. 537, doi. 10.1007/s10822-022-00464-3
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- Publication type:
- Article
Incorporating significant amino acid pairs and protein domains to predict RNA splicing-related proteins with functional roles.
- Published in:
- Journal of Computer-Aided Molecular Design, 2014, v. 28, n. 1, p. 49, doi. 10.1007/s10822-014-9706-6
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- Publication type:
- Article
EuLoc: a web-server for accurately predict protein subcellular localization in eukaryotes by incorporating various features of sequence segments into the general form of Chou's PseAAC.
- Published in:
- Journal of Computer-Aided Molecular Design, 2013, v. 27, n. 1, p. 91, doi. 10.1007/s10822-012-9628-0
- By:
- Publication type:
- Article
Carboxylator: incorporating solvent-accessible surface area for identifying protein carboxylation sites.
- Published in:
- Journal of Computer-Aided Molecular Design, 2011, v. 25, n. 10, p. 987, doi. 10.1007/s10822-011-9477-2
- By:
- Publication type:
- Article
Rapid Antibiotic Resistance Serial Prediction in Staphylococcus aureus Based on Large-Scale MALDI-TOF Data by Applying XGBoost in Multi-Label Learning.
- Published in:
- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.853775
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- Publication type:
- Article
Large-Scale Samples Based Rapid Detection of Ciprofloxacin Resistance in Klebsiella pneumoniae Using Machine Learning Methods.
- Published in:
- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.827451
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- Publication type:
- Article
UbiNet 2.0: a verified, classified, annotated and updated database of E3 ubiquitin ligase–substrate interactions.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab010
- By:
- Publication type:
- Article
UbiNet: an online resource for exploring the functional associations and regulatory networks of protein ubiquitylation.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw054
- By:
- Publication type:
- Article
RegPhos 2.0: an updated resource to explore protein kinase–substrate phosphorylation networks in mammals.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau034
- By:
- Publication type:
- Article
Multi-Omics Characterization of E3 Regulatory Patterns in Different Cancer Types.
- Published in:
- International Journal of Molecular Sciences, 2024, v. 25, n. 14, p. 7639, doi. 10.3390/ijms25147639
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- Publication type:
- Article
SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S-sulfenylation sites.
- Published in:
- BMC Genomics, 2016, v. 17, p. 59, doi. 10.1186/s12864-015-2299-1
- By:
- Publication type:
- Article
Investigation and identification of protein carbonylation sites based on position-specific amino acid composition and physicochemical features.
- Published in:
- BMC Bioinformatics, 2017, v. 18, p. 125, doi. 10.1186/s12859-017-1472-8
- By:
- Publication type:
- Article
A two-stage computational framework for identifying antiviral peptides and their functional types based on contrastive learning and multi-feature fusion strategy.
- Published in:
- Briefings in Bioinformatics, 2024, v. 25, n. 3, p. 1, doi. 10.1093/bib/bbae208
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- Publication type:
- Article
Guided diffusion for molecular generation with interaction prompt.
- Published in:
- Briefings in Bioinformatics, 2024, v. 25, n. 3, p. 1, doi. 10.1093/bib/bbae174
- By:
- Publication type:
- Article
A risk assessment framework for multidrug-resistant Staphylococcus aureus using machine learning and mass spectrometry technology.
- Published in:
- Briefings in Bioinformatics, 2023, v. 24, n. 6, p. 1, doi. 10.1093/bib/bbad330
- By:
- Publication type:
- Article
Holistic similarity-based prediction of phosphorylation sites for understudied kinases.
- Published in:
- Briefings in Bioinformatics, 2023, v. 24, n. 2, p. 1, doi. 10.1093/bib/bbac624
- By:
- Publication type:
- Article
Identification of species-specific RNA N6-methyladinosine modification sites from RNA sequences.
- Published in:
- Briefings in Bioinformatics, 2023, v. 24, n. 2, p. 1, doi. 10.1093/bib/bbac573
- By:
- Publication type:
- Article