Works by Tsirigos, Aristotelis

Results: 68

A conserved activation element in BMP signaling during Drosophila development.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 1, p. 69, doi. 10.1038/nsmb.1715

By:

Weiss, Alexander;
Charbonnier, Enrica;
Ellertsdóttir, Elín;
Tsirigos, Aristotelis;
Wolf, Christian;
Schuh, Reinhard;
Pyrowolakis, George;
Affolter, Markus

Publication type:

Article

GenomicTools: a computational platform for developing high-throughput analytics in genomics.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 282, doi. 10.1093/bioinformatics/btr646

By:

Tsirigos, Aristotelis;
Haiminen, Niina;
Bilal, Erhan;
Utro, Filippo

Publication type:

Article

GCN2 drives macrophage and MDSC function and immunosuppression in the tumor microenvironment.

Published in:

Science Immunology, 2019, v. 4, n. 42, p. 1, doi. 10.1126/sciimmunol.aax8189

By:

Halaby, Marie Jo;
Hezaveh, Kebria;
Lamorte, Sara;
Ciudad, M. Teresa;
Kloetgen, Andreas;
MacLeod, Bethany L.;
Mengdi Guo;
Chakravarthy, Ankur;
Da Silva Medina, Tiago;
Ugel, Stefano;
Tsirigos, Aristotelis;
Bronte, Vincenzo;
Munn, David H.;
Pugh, Trevor J.;
De Carvalho, Daniel D.;
Butler, Marcus O.;
Ohashi, Pamela S.;
Brooks, David G.;
McGaha, Tracy L.

Publication type:

Article

Human blastocysts of normal and abnormal karyotypes display distinct transcriptome profiles.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-33279-0

By:

Licciardi, Frederick;
Lhakhang, Tenzin;
Kramer, Yael G.;
Zhang, Yutong;
Heguy, Adriana;
Tsirigos, Aristotelis

Publication type:

Article

Author Correction: Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation.

Published in:

2020

By:

Nishana, Mayilaadumveettil;
Ha, Caryn;
Rodriguez-Hernaez, Javier;
Ranjbaran, Ali;
Chio, Erica;
Nora, Elphege P.;
Badri, Sana B.;
Kloetgen, Andreas;
Bruneau, Benoit G.;
Tsirigos, Aristotelis;
Skok, Jane A.

Publication type:

Correction Notice

Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02024-0

By:

Nishana, Mayilaadumveettil;
Ha, Caryn;
Rodriguez-Hernaez, Javier;
Ranjbaran, Ali;
Chio, Erica;
Nora, Elphege P.;
Badri, Sana B.;
Kloetgen, Andreas;
Bruneau, Benoit G.;
Tsirigos, Aristotelis;
Skok, Jane A.

Publication type:

Article

Genetic inactivation of the polycomb repressive complex 2 in T cell acute lymphoblastic leukemia.

Published in:

Nature Medicine, 2012, v. 18, n. 2, p. 298, doi. 10.1038/nm.2651

By:

Ntziachristos, Panagiotis;
Tsirigos, Aristotelis;
Vlierberghe, Pieter Van;
Nedjic, Jelena;
Trimarchi, Thomas;
Flaherty, Maria Sol;
Ferres-Marco, Dolors;
da Ros, Vanina;
Tang, Zuojian;
Siegle, Jasmin;
Asp, Patrik;
Hadler, Michael;
Rigo, Isaura;
Keersmaecker, Kim De;
Patel, Jay;
Huynh, Tien;
Utro, Filippo;
Poglio, Sandrine;
Samon, Jeremy B;
Paietta, Elisabeth

Publication type:

Article

Microbial genetic and transcriptional contributions to oxalate degradation by the gut microbiota in health and disease.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.63642

By:

Liu, Menghan;
Devlin, Joseph C.;
Hu, Jiyuan;
Volkova, Angelina;
Battaglia, Thomas W.;
Ho, Melody;
Asplin, John R.;
Byrd, Allyson;
Loke, P’ng;
Li, Huilin;
Ruggles, Kelly V.;
Tsirigos, Aristotelis;
Blaser, Martin J.;
Nazzal, Lama

Publication type:

Article

DNA methylation-based epigenetic signatures predict somatic genomic alterations in gliomas.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31827-x

By:

Yang, Jie;
Wang, Qianghu;
Zhang, Ze-Yan;
Long, Lihong;
Ezhilarasan, Ravesanker;
Karp, Jerome M.;
Tsirigos, Aristotelis;
Snuderl, Matija;
Wiestler, Benedikt;
Wick, Wolfgang;
Miao, Yinsen;
Huse, Jason T.;
Sulman, Erik P.

Publication type:

Article

Modulating mitofusins to control mitochondrial function and signaling.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31324-1

By:

Zacharioudakis, Emmanouil;
Agianian, Bogos;
Kumar MV, Vasantha;
Biris, Nikolaos;
Garner, Thomas P.;
Rabinovich-Nikitin, Inna;
Ouchida, Amanda T.;
Margulets, Victoria;
Nordstrøm, Lars Ulrik;
Riley, Joel S.;
Dolgalev, Igor;
Chen, Yun;
Wittig, Andre J. H.;
Pekson, Ryan;
Mathew, Chris;
Wei, Peter;
Tsirigos, Aristotelis;
Tait, Stephen W. G.;
Kirshenbaum, Lorrie A.;
Kitsis, Richard N.

Publication type:

Article

Co-targeting of BAX and BCL-XL proteins broadly overcomes resistance to apoptosis in cancer.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28741-7

By:

Lopez, Andrea;
Reyna, Denis E.;
Gitego, Nadege;
Kopp, Felix;
Zhou, Hua;
Miranda-Roman, Miguel A.;
Nordstrøm, Lars Ulrik;
Narayanagari, Swathi-Rao;
Chi, Ping;
Vilar, Eduardo;
Tsirigos, Aristotelis;
Gavathiotis, Evripidis

Publication type:

Article

NSD2 E1099K drives relapse in pediatric acute lymphoblastic leukemia by disrupting 3D chromatin organization.

Published in:

Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02905-0

By:

Narang, Sonali;
Evensen, Nikki A.;
Saliba, Jason;
Pierro, Joanna;
Loh, Mignon L.;
Brown, Patrick A.;
Kolekar, Pandurang;
Mulder, Heather;
Shao, Ying;
Easton, John;
Ma, Xiaotu;
Tsirigos, Aristotelis;
Carroll, William L.

Publication type:

Article

Lineage-coupled clonal capture identifies clonal evolution mechanisms and vulnerabilities of BRAF<sup>V600E</sup> inhibition resistance in melanoma.

Published in:

Cell Discovery, 2022, v. 8, n. 1, p. 1, doi. 10.1038/s41421-022-00462-7

By:

Zhang, Ze-Yan;
Ding, Yingwen;
Ezhilarasan, Ravesanker;
Lhakhang, Tenzin;
Wang, Qianghu;
Yang, Jie;
Modrek, Aram S.;
Zhang, Hua;
Tsirigos, Aristotelis;
Futreal, Andrew;
Draetta, Giulio F.;
Verhaak, Roel G. W.;
Sulman, Erik P.

Publication type:

Article

The Transcription Factor Zfx Regulates Peripheral T Cell Self-Renewal and Proliferation.

Published in:

Frontiers in Immunology, 2018, p. N.PAG, doi. 10.3389/fimmu.2018.01482

By:

Smith-Raska, Matthew R.;
Arenzana, Teresita L.;
D’Cruz, Louise M.;
Khodadadi-Jamayran, Alireza;
Tsirigos, Aristotelis;
Goldrath, Ananda W.;
Reizis, Boris

Publication type:

Article

An epigenetic switch controls an alternative NR2F2 isoform that unleashes a metastatic program in melanoma.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36967-2

By:

Davalos, Veronica;
Lovell, Claudia D.;
Von Itter, Richard;
Dolgalev, Igor;
Agrawal, Praveen;
Baptiste, Gillian;
Kahler, David J.;
Sokolova, Elena;
Moran, Sebastian;
Piqué, Laia;
Vega-Saenz de Miera, Eleazar;
Fontanals-Cirera, Barbara;
Karz, Alcida;
Tsirigos, Aristotelis;
Yun, Chi;
Darvishian, Farbod;
Etchevers, Heather C.;
Osman, Iman;
Esteller, Manel;
Schober, Markus

Publication type:

Article

Co-targeting of BAX and BCL-XL proteins broadly overcomes resistance to apoptosis in cancer.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28741-7

By:

Lopez, Andrea;
Reyna, Denis E.;
Gitego, Nadege;
Kopp, Felix;
Zhou, Hua;
Miranda-Roman, Miguel A.;
Nordstrøm, Lars Ulrik;
Narayanagari, Swathi-Rao;
Chi, Ping;
Vilar, Eduardo;
Tsirigos, Aristotelis;
Gavathiotis, Evripidis

Publication type:

Article

Understanding the "lethal" drivers of tumor-stroma co-evolution.

Published in:

Cancer Biology & Therapy, 2010, v. 10, n. 6, p. 537, doi. 10.4161/cbt.10.6.13370

By:

Lisanti, Michael P.;
Martinez-Outschoorn, Ubaldo E.;
Chiavarina, Barbara;
Pavlides, Stephanos;
Whitaker-Menezes, Diana;
Tsirigos, Aristotelis;
Witkiewicz, Agnieszka;
Lin, Zhao;
Balliet, Renee;
Howell, Anthony;
Sotgia, Federica

Publication type:

Article

Airway Microbiota Is Associated with Upregulation of the PI3K Pathway in Lung Cancer.

Published in:

2018

By:

Tsay, Jun-Chieh J;
Wu, Benjamin G;
Badri, Michelle H;
Clemente, Jose C;
Shen, Nan;
Meyn, Peter;
Li, Yonghua;
Yie, Ting-An;
Lhakhang, Tenzin;
Olsen, Evan;
Murthy, Vivek;
Michaud, Gaetane;
Sulaiman, Imran;
Tsirigos, Aristotelis;
Heguy, Adriana;
Pass, Harvey;
Weiden, Michael D;
Rom, William N;
Sterman, Daniel H;
Bonneau, Richard

Publication type:

journal article

Stratification of TAD boundaries reveals preferential insulation of super-enhancers by strong boundaries.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03017-1

By:

Yixiao Gong;
Lazaris, Charalampos;
Sakellaropoulos, Theodore;
Lozano, Aurelie;
Kambadur, Prabhanjan;
Ntziachristos, Panagiotis;
Aifantis, Iannis;
Tsirigos, Aristotelis

Publication type:

Article

Muscle progenitor specification and myogenic differentiation are associated with changes in chromatin topology.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-19999-w

By:

Zhang, Nan;
Mendieta-Esteban, Julen;
Magli, Alessandro;
Lilja, Karin C.;
Perlingeiro, Rita C. R.;
Marti-Renom, Marc A.;
Tsirigos, Aristotelis;
Dynlacht, Brian David

Publication type:

Article

Opposing functions of H2BK120 ubiquitylation and H3K79 methylation in the regulation of pluripotency by the Paf1 complex.

Published in:

Cell Cycle, 2017, v. 16, n. 24, p. 2315, doi. 10.1080/15384101.2017.1295194

By:

Strikoudis, Alexandros;
Lazaris, Charalampos;
Ntziachristos, Panagiotis;
Tsirigos, Aristotelis;
Aifantis, Iannis

Publication type:

Article

JNK1 stress signaling is hyper-activated in high breast density and the tumor stroma.

Published in:

Cell Cycle, 2014, v. 13, n. 4, p. 580, doi. 10.4161/cc.27379

By:

Lisanti, Michael P.;
Tsirigos, Aristotelis;
Pavlides, Stephanos;
Reeves, Kimberley Jayne;
Peiris-Pagès, Maria;
Chadwick, Amy L.;
Sanchez-Alvarez, Rosa;
Lamb, Rebecca;
Howell, Anthony;
Martinez-outschoorn, Ubaldo E.;
Sotgia, Federica

Publication type:

Article

Mitochondria "fuel" breast cancer metabolism.

Published in:

Cell Cycle, 2012, v. 11, n. 23, p. 4390, doi. 10.4161/cc.22777

By:

Sotgia, Federica;
Whitaker-Menezes, Diana;
Martinez-Outschoorn, Ubaldo E.;
Salem, Ahmed F.;
Tsirigos, Aristotelis;
Lamb, Rebecca;
Sneddon, Sharon;
Hulit, James;
Howell, Anthony;
Lisanti, Michael P.

Publication type:

Article

The milk protein α-casein functions as a tumor suppressor via activation of STAT1 signaling, effectively preventing breast cancer tumor growth and metastasis.

Published in:

Cell Cycle, 2012, v. 11, n. 21, p. 3972, doi. 10.4161/cc.22227

By:

Bonuccelli, Gloria;
Castello-Cros, Remedios;
Capozza, Franco;
Martinez-Outschoorn, Ubaldo e.;
Zhao Lin;
Tsirigos, Aristotelis;
Jiao Xuanmao;
Whitaker-Menezes, Diana;
Howell, Anthony;
Lisanti, Michael P.;
Sotgia, Federica

Publication type:

Article

Autophagy and senescence in cancer-associated fibroblasts metabolically supports tumor growth and metastasis, via glycolysis and ketone production.

Published in:

Cell Cycle, 2012, v. 11, n. 12, p. 2285, doi. 10.4161/cc.20718

By:

Capparelli, Claudia;
Guido, Carmela;
Whitaker-Menezes, Diana;
Bonuccelli, Gloria;
Balliet, Renee;
Pestell, Timothy G.;
Goldberg, Allison F.;
Pestell, Richard G.;
Howell, Anthony;
Sneddon, Sharon;
Birbe, Ruth;
Tsirigos, Aristotelis;
Martinez-Outschoorn, Ubaldo;
Sotgia, Federica;
Lisanti, Michael P.

Publication type:

Article

Is cancer a metabolic rebellion against host aging?.

Published in:

Cell Cycle, 2012, v. 11, n. 2, p. 253, doi. 10.4161/cc.11.2.19006

By:

Ertel, Adam;
Tsirigos, Aristotelis;
Whitaker-Menezes, Diana;
Birbe, Ruth C.;
Pavlides, Stephanos;
Martinez-Outschoorn, Ubaldo E.;
Pestell, Richard G.;
Howell, Anthony;
Sotgia, Federica;
Lisanti, Michael P.

Publication type:

Article

Hyperactivation of oxidative mitochondrial metabolism in epithelial cancer cells in situ.

Published in:

Cell Cycle, 2011, v. 10, n. 23, p. 4047, doi. 10.4161/cc.10.23.18151

By:

Whitaker-Menezes, Diana;
Martinez-Outschoorn, Ubaldo E.;
Flomenberg, Neal;
Birbe, Ruth C.;
Witkiewicz, Agnieszka K.;
Howell, Anthony;
Pavlides, Stephanos;
Tsirigos, Aristotelis;
Ertel, Adam;
Pestell, Richard G.;
Broda, Paolo;
Minetti, Carlo;
Lisanti, Michael P.;
Sotgia, Federica

Publication type:

Article

Molecular profiling of a lethal tumor microenvironment, as defined by stromal caveolin-1 status in breast cancers.

Published in:

Cell Cycle, 2011, v. 10, n. 11, p. 1794, doi. 10.4161/cc.10.11.15675

By:

Witkiewicz, Agnieszka K.;
Kline, Jessica;
Queenan, Maria;
Brody, Jonathan R.;
Tsirigos, Aristotelis;
Bilal, Erhan;
Pavlides, Stephanos;
Ertel, Adam;
Sotgia, Federica;
Lisanti, Michael P.

Publication type:

Article

Ketones and lactate increase cancer cell "stemness", driving recurrence, metastasis and poor clinical outcome in breast cancer.

Published in:

Cell Cycle, 2011, v. 10, n. 8, p. 1271, doi. 10.4161/cc.10.8.15330

By:

Martinez-Outschoorn, Ubaldo E.;
Prisco, Marco;
Ertel, Adam;
Tsirigos, Aristotelis;
Zhao Lin;
Pavlides, Stephanos;
Chengwang Wang;
Flomenberg, Neal;
Knudsen, Erik S.;
Howell, Anthony;
Pestell, Richard G.;
Sotgia, Federica;
Lisanti, Michael P.

Publication type:

Article

Alu and B1 Repeats Have Been Selectively Retained in the Upstream and Intronic Regions of Genes of Specific Functional Classes.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000610

By:

Tsirigos, Aristotelis;
Rigoutsos, Isidore

Publication type:

Article

H3K27me3 dynamics dictate evolving uterine states in pregnancy and parturition.

Published in:

2018

By:

Nancy, Patrice;
Siewiera, Johan;
Rizzuto, Gabrielle;
Tagliani, Elisa;
Osokine, Ivan;
Manandhar, Priyanka;
Dolgalev, Igor;
Clementi, Caterina;
Tsirigos, Aristotelis;
Erlebacher, Adrian

Publication type:

journal article

Pancreatic β cell identity requires continual repression of non-β cell programs.

Published in:

2017

By:

Gutiérrez, Giselle Domínguez;
Bender, Aaron S.;
Cirulli, Vincenzo;
Mastracci, Teresa L.;
Kelly, Stephen M.;
Tsirigos, Aristotelis;
Kaestner, Klaus H.;
Sussel, Lori

Publication type:

journal article

Loss of Notch signaling in skeletal stem cells enhances bone formation with aging.

Published in:

Bone Research, 2023, v. 11, n. 1, p. 1, doi. 10.1038/s41413-023-00283-8

By:

Remark, Lindsey H.;
Leclerc, Kevin;
Ramsukh, Malissa;
Lin, Ziyan;
Lee, Sooyeon;
Dharmalingam, Backialakshmi;
Gillinov, Lauren;
Nayak, Vasudev V.;
El Parente, Paulo;
Sambon, Margaux;
Atria, Pablo J.;
Ali, Mohamed A. E.;
Witek, Lukasz;
Castillo, Alesha B.;
Park, Christopher Y;
Adams, Ralf H.;
Tsirigos, Aristotelis;
Morgani, Sophie M.;
Leucht, Philipp

Publication type:

Article

Self-supervised learning reveals clinically relevant histomorphological patterns for therapeutic strategies in colon cancer.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-57541-y

By:

Liu, Bojing;
Polack, Meaghan;
Coudray, Nicolas;
Claudio Quiros, Adalberto;
Sakellaropoulos, Theodore;
Le, Hortense;
Karimkhan, Afreen;
Crobach, Augustinus S. L. P.;
van Krieken, J. Han J. M.;
Yuan, Ke;
Tollenaar, Rob A. E. M.;
Mesker, Wilma E.;
Tsirigos, Aristotelis

Publication type:

Article

Effects of image quantity and image source variation on machine learning histology differential diagnosis models.

Published in:

Journal of Pathology Informatics, 2021, v. 12, p. 5, doi. 10.4103/jpi.jpi_69_20

By:

Vali-Betts, Elham;
Krause, Kevin;
Dubrovsky, Alanna;
Olson, Kristin;
Graff, John;
Mitra, Anupam;
Datta-Mitra, Ananya;
Beck, Kenneth;
Tsirigos, Aristotelis;
Loomis, Cynthia;
Neto, Antonio;
Adler, Esther;
Rashidi, Hooman

Publication type:

Article

Effects of Image Quantity and Image Source Variation on Machine Learning Histology Differential Diagnosis Models.

Published in:

Journal of Pathology Informatics, 2021, v. 12, p. 1, doi. 10.4103/jpi.jpi_69_20

By:

Vali-Betts, Elham;
Krause, Kevin J.;
Dubrovsky, Alanna;
Olson, Kristin;
Graff, John Paul;
Mitra, Anupam;
Datta-Mitra, Ananya;
Beck, Kenneth;
Tsirigos, Aristotelis;
Loomis, Cynthia;
Galvao Neto, Antonio;
Adler, Esther;
Rashidi, Hooman H.

Publication type:

Article

Effects of image quantity and image source variation on machine learning histology differential diagnosis models.

Published in:

Journal of Pathology Informatics, 2021, p. 5, doi. 10.4103/jpi.jpi_69_20

By:

Vali-Betts, Elham;
Krause, Kevin;
Dubrovsky, Alanna;
Olson, Kristin;
Graff, John;
Mitra, Anupam;
Datta-Mitra, Ananya;
Beck, Kenneth;
Tsirigos, Aristotelis;
Loomis, Cynthia;
Neto, Antonio;
Adler, Esther;
Rashidi, Hooman

Publication type:

Article

Accurate phylogenetic classification of variable-length DNA fragments.

Published in:

Nature Methods, 2007, v. 4, n. 1, p. 63, doi. 10.1038/nmeth976

By:

McHardy, Alice Carolyn;
Martín, Héctor García;
Tsirigos, Aristotelis;
Hugenholtz, Philip;
Rigoutsos, Isidore

Publication type:

Article

Decreased cytotoxic T cells and TCR clonality in organ transplant recipients with squamous cell carcinoma.

Published in:

NPJ Precision Oncology, 2020, v. 4, n. 1, p. 1, doi. 10.1038/s41698-020-0119-9

By:

Frazzette, Nicholas;
Khodadadi-Jamayran, Alireza;
Doudican, Nicole;
Santana, Alexis;
Felsen, Diane;
Pavlick, Anna C.;
Tsirigos, Aristotelis;
Carucci, John A.

Publication type:

Article

Integrative CRISPR Activation and Small Molecule Inhibitor Screening for lncRNA Mediating BRAF Inhibitor Resistance in Melanoma.

Published in:

Biomedicines, 2023, v. 11, n. 7, p. 2054, doi. 10.3390/biomedicines11072054

By:

Shamloo, Sama;
Kloetgen, Andreas;
Petroulia, Stavroula;
Hockemeyer, Kathryn;
Sievers, Sonja;
Tsirigos, Aristotelis;
Aifantis, Ioannis;
Imig, Jochen

Publication type:

Article

SOX2 is a cancer-specific regulator of tumour initiating potential in cutaneous squamous cell carcinoma.

Published in:

Nature Communications, 2014, v. 5, n. 7, p. 4511, doi. 10.1038/ncomms5511

By:

Siegle, Jasmin M.;
Basin, Alice;
Sastre-Perona, Ana;
Yonekubo, Yoshiya;
Brown, Jessie;
Sennett, Rachel;
Rendl, Michael;
Tsirigos, Aristotelis;
Carucci, John A.;
Schober, Markus

Publication type:

Article

Apolipoprotein E4 Effects a Distinct Transcriptomic Profile and Dendritic Arbor Characteristics in Hippocampal Neurons Cultured in vitro.

Published in:

Frontiers in Aging Neuroscience, 2022, v. 14, p. 1, doi. 10.3389/fnagi.2022.845291

By:

Diaz, Jenny R.;
Martá-Ariza, Mitchell;
Khodadadi-Jamayran, Alireza;
Heguy, Adriana;
Tsirigos, Aristotelis;
Pankiewicz, Joanna E.;
Sullivan, Patrick M.;
Sadowski, Martin J.

Publication type:

Article

MetFinder: A Tool for Automated Quantitation of Metastatic Burden in Histological Sections From Preclinical Models.

Published in:

Pigment Cell & Melanoma Research, 2025, v. 38, n. 1, p. 1, doi. 10.1111/pcmr.13195

By:

Karz, Alcida;
Coudray, Nicolas;
Bayraktar, Erol;
Galbraith, Kristyn;
Jour, George;
Shadaloey, Arman Alberto Sorin;
Eskow, Nicole;
Rubanov, Andrey;
Navarro, Maya;
Moubarak, Rana;
Baptiste, Gillian;
Levinson, Grace;
Mezzano, Valeria;
Alu, Mark;
Loomis, Cynthia;
Lima, Daniel;
Rubens, Adam;
Jilaveanu, Lucia;
Tsirigos, Aristotelis;
Hernando, Eva

Publication type:

Article

Universal receptive system as a novel regulator of transcriptomic activity of Staphylococcus aureus.

Published in:

Microbial Cell Factories, 2025, v. 24, n. 1, p. 1, doi. 10.1186/s12934-024-02637-1

By:

Tetz, George;
Kardava, Kristina;
Vecherkovskaya, Maria;
Khodadadi-Jamayran, Alireza;
Tsirigos, Aristotelis;
Tetz, Victor

Publication type:

Article

A new computational method for the detection of horizontal gene transfer events.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 3, p. 922, doi. 10.1093/nar/gki187

By:

Tsirigos, Aristotelis;
Rigoutsos, Isidore

Publication type:

Article

NSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domains.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-12811-4

By:

Lhoumaud, Priscillia;
Badri, Sana;
Rodriguez-Hernaez, Javier;
Sakellaropoulos, Theodore;
Sethia, Gunjan;
Kloetgen, Andreas;
Cornwell, MacIntosh;
Bhattacharyya, Sourya;
Ay, Ferhat;
Bonneau, Richard;
Tsirigos, Aristotelis;
Skok, Jane A.

Publication type:

Article

The autophagic tumor stroma model of cancer or "battery-operated tumor growth.".

Published in:

Cell Cycle, 2010, v. 9, n. 21, p. 4297, doi. 10.4161/cc.9.21.13817

By:

Martinez-Outschoorn, Ubaldo E.;
Whitaker-Menezes, Diana;
Pavlides, Stephanos;
Chiavarina, Barbara;
Bonuccelli, Gloria;
Trimmer, Casey;
Tsirigos, Aristotelis;
Migneco, Gemma;
Witkiewicz, Agnieszka K.;
Balliet, Renee;
Mercier, Isabelle;
Chengwang Wang;
Flomenberg, Neal;
Howell, Anthony;
Zhao Lin;
Caro, Jaime;
Pestell, Richard G.;
Sotgia, Federica;
Lisanti, Michael P.

Publication type:

Article

The autophagic tumor stroma model of cancer.

Published in:

Cell Cycle, 2010, v. 9, n. 17, p. 3485, doi. 10.4161/cc.9.17.12721

By:

Pavlides, Stephanos;
Tsirigos, Aristotelis;
Migneco, Gemma;
Whitaker-Menezes, Diana;
Chiavarina, Barbara;
Flomenberg, Neal;
Frank, Philippe G.;
Casimiro, Mathew C.;
Wang, Chenguang;
Pestell, Richard G.;
Martinez-Outschoorn, Ubaldo E.;
Howell, Anthony;
Sotgia, Federica;
Lisanti, Michael P.

Publication type:

Article

Ketones and lactate "fuel" tumor growth and metastasis.

Published in:

Cell Cycle, 2010, v. 9, n. 17, p. 3506, doi. 10.4161/cc.9.17.12731

By:

Bonuccelli, Gloria;
Tsirigos, Aristotelis;
Whitaker-Menezes, Diana;
Pavlides, Stephanos;
Pestell, Richard G.;
Chiavarina, Barbara;
Frank, Philippe G.;
Flomenberg, Neal;
Howell, Anthony;
Martinez-Outschoorn, Ubaldo E.;
Sotgia, Federica;
Lisanti, Michael P.

Publication type:

Article

Glycolytic cancer associated ibroblasts promote breast cancer tumor growth, without a measurable increase in angiogenesis.

Published in:

Cell Cycle, 2010, v. 9, n. 12, p. 2412, doi. 10.4161/cc.9.12.11989

By:

Migneco, Gemma;
Whitaker-Menezes, Diana;
Chiavarina, Barbara;
Castello-Cros, Remedios;
Pavlides, Stephanos;
Pestell, Richard G.;
Fatatis, Alessandro;
Flomenberg, Neal;
Tsirigos, Aristotelis;
Howell, Anthony;
Martinez-Outschoorn, Ubaldo E.;
Sotgia, Federica;
Lisanti, Michael P.

Publication type:

Article