Found: 38
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Limited genomic reconstruction of SARS-CoV-2 transmission history within local epidemiological clusters.
- Published in:
- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac008
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- Publication type:
- Article
Enabling accurate and early detection of recently emerged SARS-CoV-2 variants of concern in wastewater.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38184-3
- By:
- Publication type:
- Article
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline.
- Published in:
- Genome Biology, 2013, v. 14, n. 1, p. 1, doi. 10.1186/gb-2013-14-1-r2
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- Publication type:
- Article
Irreconcilable diff erences: divorcing geographic mutation and recombination rates within a global MRSA clone
- Published in:
- Genome Biology, 2012, v. 13, n. 12, p. 181, doi. 10.1186/gb-2012-13-12-181
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- Publication type:
- Article
Repetitive DNA and next-generation sequencing: computational challenges and solutions.
- Published in:
- 2012
- By:
- Publication type:
- Correction notice
Repetitive DNA and next-generation sequencing: computational challenges and solutions.
- Published in:
- Nature Reviews Genetics, 2012, v. 13, n. 1, p. 36, doi. 10.1038/nrg3117
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- Publication type:
- Article
Fecal Microbiota Transplantation Derived from Alzheimer's Disease Mice Worsens Brain Trauma Outcomes in Wild-Type Controls.
- Published in:
- International Journal of Molecular Sciences, 2022, v. 23, n. 9, p. 4476, doi. 10.3390/ijms23094476
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- Publication type:
- Article
Automated ensemble assembly and validation of microbial genomes.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-126
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- Publication type:
- Article
Traumatic Brain Injury in Mice Induces Acute Bacterial Dysbiosis Within the Fecal Microbiome.
- Published in:
- Frontiers in Immunology, 2018, p. N.PAG, doi. 10.3389/fimmu.2018.02757
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- Publication type:
- Article
Horizontal Transfer, Not Duplication, Drives the Expansion of Protein Families in Prokaryotes.
- Published in:
- PLoS Genetics, 2011, v. 7, n. 1, p. 1, doi. 10.1371/journal.pgen.1001284
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- Publication type:
- Article
Microbial Community Profiling Protocol with Full‐length 16S rRNA Sequences and Emu.
- Published in:
- Current Protocols, 2024, v. 4, n. 3, p. 1, doi. 10.1002/cpz1.978
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- Publication type:
- Article
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.
- Published in:
- Briefings in Bioinformatics, 2019, p. 1140, doi. 10.1093/bib/bbx098
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- Publication type:
- Article
Reference-free structural variant detection in microbiomes via long-read co-assembly graphs.
- Published in:
- Bioinformatics, 2024, v. 40, p. i58, doi. 10.1093/bioinformatics/btae224
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- Publication type:
- Article
Parsnp 2.0: scalable core-genome alignment for massive microbial datasets.
- Published in:
- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae311
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- Publication type:
- Article
Minmers are a generalization of minimizers that enable unbiased local Jaccard estimation.
- Published in:
- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad512
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- Publication type:
- Article
Bakdrive: identifying a minimum set of bacterial species driving interactions across multiple microbial communities.
- Published in:
- Bioinformatics, 2023, v. 39, p. i47, doi. 10.1093/bioinformatics/btad236
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- Publication type:
- Article
PlasmidHawk improves lab of origin prediction of engineered plasmids using sequence alignment.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21180-w
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- Publication type:
- Article
RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification.
- Published in:
- 2018
- By:
- Publication type:
- Letter
Identification and Genomic Analysis of a Novel Group C Orthobunyavirus Isolated from a Mosquito Captured near Iquitos, Peru.
- Published in:
- PLoS Neglected Tropical Diseases, 2016, v. 10, n. 4, p. 1, doi. 10.1371/journal.pntd.0004440
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- Publication type:
- Article
Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease.
- Published in:
- PLoS ONE, 2012, v. 7, n. 6, p. e37919, doi. 10.1371/journal.pone.0037919
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- Publication type:
- Article
It takes guts to learn: machine learning techniques for disease detection from the gut microbiome.
- Published in:
- Emerging Topics in Life Sciences, 2021, v. 5, n. 6, p. 815, doi. 10.1042/ETLS20210213
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- Publication type:
- Article
De novo identification of microbial contaminants in low microbial biomass microbiomes with Squeegee.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34409-z
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- Publication type:
- Article
Current progress and open challenges for applying deep learning across the biosciences.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29268-7
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- Publication type:
- Article
Rescuing low frequency variants within intra-host viral populations directly from Oxford Nanopore sequencing data.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28852-1
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- Publication type:
- Article
You can't always sequence your way out of a tight spot.
- Published in:
- EMBO Reports, 2018, v. 19, n. 12, p. N.PAG, doi. 10.15252/embr.201847036
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- Publication type:
- Article
Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment.
- Published in:
- GigaScience, 2021, v. 10, n. 9, p. 1, doi. 10.1093/gigascience/giab063
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- Publication type:
- Article
To Petabytes and beyond: recent advances in probabilistic and signal processing algorithms and their application to metagenomics.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. 10, p. 5217, doi. 10.1093/nar/gkaa265
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- Publication type:
- Article
Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49957-9
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- Publication type:
- Article
MethPhaser: methylation-based long-read haplotype phasing of human genomes.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49588-0
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- Publication type:
- Article
MethPhaser: methylation-based long-read haplotype phasing of human genomes.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49588-0
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- Publication type:
- Article
Crykey: Rapid identification of SARS-CoV-2 cryptic mutations in wastewater.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-48334-w
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- Publication type:
- Article
Multiple genome alignment in the telomere-to-telomere assembly era.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02735-6
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- Publication type:
- Article
SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02695-x
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- Publication type:
- Article
Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers.
- Published in:
- PLoS ONE, 2016, v. 11, n. 9, p. 1, doi. 10.1371/journal.pone.0160574
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- Publication type:
- Article
Bambus 2: scaffolding metagenomes.
- Published in:
- Bioinformatics, 2011, v. 27, n. 21, p. 2964, doi. 10.1093/bioinformatics/btr520
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- Publication type:
- Article
Mash: fast genome and metagenome distance estimation using MinHash.
- Published in:
- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-0997-x
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- Publication type:
- Article
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes.
- Published in:
- Genome Biology, 2014, v. 15, n. 10, p. 524, doi. 10.1186/s13059-014-0524-x
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- Publication type:
- Article
The long game of tenure.
- Published in:
- 2023
- By:
- Publication type:
- Letter