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Single-cell transcriptomic profiling of the zebrafish inner ear reveals molecularly distinct hair cell and supporting cell subtypes.
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- eLife, 2023, p. 1, doi. 10.7554/eLife.82978
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- Article
Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation.
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- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02432-w
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- Article
Pulmonary macrophage transplantation therapy.
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- Nature, 2014, v. 514, n. 7523, p. 450, doi. 10.1038/nature13807
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- Article
Extreme heterogeneity of influenza virus infection in single cells.
- Published in:
- eLife, 2018, p. 1, doi. 10.7554/eLife.32303
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- Article
Dimensionality reduction by UMAP to visualize physical and genetic interactions.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15351-4
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- Article
Binding Site Turnover Produces Pervasive Quantitative Changes in Transcription Factor Binding between Closely Related Drosophila Species.
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- PLoS Biology, 2010, v. 8, n. 3, p. 1, doi. 10.1371/journal.pbio.1000343
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- Article
Nuclear oligo hashing improves differential analysis of single-cell RNA-seq.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30309-4
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- Article
Engineering a niche supporting hematopoietic stem cell development using integrated single-cell transcriptomics.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28781-z
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- Article
RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome.
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- Genome Biology, 2014, v. 15, n. 1, p. R3, doi. 10.1186/gb-2014-15-1-r3
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- Article
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.
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- Genome Biology, 2013, v. 14, n. 4, p. 1, doi. 10.1186/gb-2013-14-4-r36
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- Article
Identification of novel transcripts in annotated genomes using RNA-Seq.
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- Bioinformatics, 2011, v. 27, n. 17, p. 2325, doi. 10.1093/bioinformatics/btr355
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- Article
TopHat: discovering splice junctions with RNA-Seq.
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- Bioinformatics, 2009, v. 25, n. 9, p. 1105, doi. 10.1093/bioinformatics/btp120
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- Article
Improving RNA-Seq expression estimates by correcting for fragment bias.
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- Genome Biology, 2011, v. 12, n. 3, p. 1, doi. 10.1186/gb-2011-12-3-r22
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- Article
High-throughput sequence alignment using Graphics Processing Units.
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- BMC Bioinformatics, 2007, v. 8, p. 474, doi. 10.1186/1471-2105-8-474
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- Article
Single-cell analysis of chromatin and expression reveals age- and sex-associated alterations in the human heart.
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- Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06582-y
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- Article
Sci-fate characterizes the dynamics of gene expression in single cells.
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- Nature Biotechnology, 2020, v. 38, n. 8, p. 980, doi. 10.1038/s41587-020-0480-9
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- Article
Computational methods for transcriptome annotation and quantification using RNA-seq.
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- Nature Methods, 2011, v. 8, n. 6, p. 469, doi. 10.1038/nmeth.1613
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- Article
Transcriptomic profiling of tissue environments critical for post-embryonic patterning and morphogenesis of zebrafish skin.
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- eLife, 2023, p. 1, doi. 10.7554/eLife.86670
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- Article
Airway epithelial interferon response to SARS-CoV-2 is inferior to rhinovirus and heterologous rhinovirus infection suppresses SARS-CoV-2 replication.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-10763-2
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- Article
Optimized single-nucleus transcriptional profiling by combinatorial indexing.
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- Nature Protocols, 2023, v. 18, n. 1, p. 188, doi. 10.1038/s41596-022-00752-0
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- Article
Targeting TWIST1 through loss of function inhibits tumorigenicity of human glioblastoma.
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- Molecular Oncology, 2018, v. 12, n. 7, p. 1188, doi. 10.1002/1878-0261.12320
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- Article
High-capacity sample multiplexing for single cell chromatin accessibility profiling.
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- BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09832-1
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- Article
Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana.
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- Plant Cell, 2019, v. 31, n. 5, p. 993, doi. 10.1105/tpc.18.00785
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- Article
Trajectory analysis quantifies transcriptional plasticity during macrophage polarization.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-68766-w
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- Article
Highly scalable generation of DNA methylation profiles in single cells.
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- Nature Biotechnology, 2018, v. 36, n. 5, p. 428, doi. 10.1038/nbt.4112
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- Article
Erratum: The anatomy of successful computational biology software.
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- Nature Biotechnology, 2014, v. 32, n. 6, p. 592, doi. 10.1038/nbt0614-592b
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- Article
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.
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- Nature Biotechnology, 2014, v. 32, n. 4, p. 381, doi. 10.1038/nbt.2859
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- Article
The anatomy of successful computational biology software.
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- Nature Biotechnology, 2013, v. 31, n. 10, p. 894, doi. 10.1038/nbt.2721
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- Article
Differential analysis of gene regulation at transcript resolution with RNA-seq.
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- Nature Biotechnology, 2013, v. 31, n. 1, p. 46, doi. 10.1038/nbt.2450
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- Article
Targeted RNA sequencing reveals the deep complexity of the human transcriptome.
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- Nature Biotechnology, 2012, v. 30, n. 1, p. 99, doi. 10.1038/nbt.2024
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- Article
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.
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- Nature Biotechnology, 2010, v. 28, n. 5, p. 511, doi. 10.1038/nbt.1621
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- Article
How to map billions of short reads onto genomes.
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- Nature Biotechnology, 2009, v. 27, n. 5, p. 455, doi. 10.1038/nbt0509-455
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- Article
Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre.
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- Nature Structural & Molecular Biology, 2014, v. 21, n. 2, p. 198, doi. 10.1038/nsmb.2764
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- Article
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99<sup>A</sup>.
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- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-204
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- Article
Predicting cellular responses to complex perturbations in high‐throughput screens.
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- Molecular Systems Biology, 2023, v. 19, n. 6, p. 1, doi. 10.15252/msb.202211517
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- Article
Neural G0: a quiescent‐like state found in neuroepithelial‐derived cells and glioma.
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- Molecular Systems Biology, 2021, v. 17, n. 6, p. 1, doi. 10.15252/msb.20209522
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- Article
High‐throughput, microscope‐based sorting to dissect cellular heterogeneity.
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- Molecular Systems Biology, 2020, v. 16, n. 6, p. 1, doi. 10.15252/msb.20209442
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- Article