Works by Townsend, Jeffrey P.

Results: 107

Rates of Evolution of Developmental Changes in Gene Expression in Sordariomycetes Open Access.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 6, p. 1, doi. 10.1093/molbev/msaf131

By:

Wang, Yen-Wen;
Wang, Fen;
Meng, Guoliang;
Lopez-Giraldez, Francesc;
Dong, Caihong;
Wang, Zheng;
Townsend, Jeffrey P

Publication type:

Article

Population Genetic Variation in Genome-Wide Gene Expression.

Published in:

Molecular Biology & Evolution, 2003, v. 20, n. 6, p. 955, doi. 10.1093/molbev/msg106

By:

Townsend, Jeffrey P.;
Cavalieri, Duccio;
Hartl, Daniel L.

Publication type:

Article

Solvent Accessibility and Purifying Selection Within Proteins of Escherichia coli and Salmonella enterica.

Published in:

Molecular Biology & Evolution, 2000, v. 17, n. 2, p. 301, doi. 10.1093/oxfordjournals.molbev.a026310

By:

Bustamante, Carlos D.;
Townsend, Jeffrey P.;
Hartl, Daniel L.

Publication type:

Article

CDKN2A Copy Number Loss Is an Independent Prognostic Factor in HPV-Negative Head and Neck Squamous Cell Carcinoma.

Published in:

Frontiers in Oncology, 2018, p. 1, doi. 10.3389/fonc.2018.00095

By:

Chen, William S.;
Bindra, Ranjit S.;
Mo, Allen;
Hayman, Thomas;
Husain, Zain;
Contessa, Joseph N.;
Gaffney, Stephen G.;
Townsend, Jeffrey P.;
Yu, James B.

Publication type:

Article

Dogs and pigs are transport hosts of Necator americanus: Molecular evidence for a zoonotic mechanism of human hookworm transmission in Ghana.

Published in:

Zoonoses & Public Health, 2020, v. 67, n. 5, p. 474, doi. 10.1111/zph.12708

By:

Boyko, Ryan H.;
Marie Harrison, Lisa;
Humphries, Debbie;
Galvani, Alison P.;
Townsend, Jeffrey P.;
Otchere, Joseph;
Wilson, Michael D.;
Cappello, Michael

Publication type:

Article

Monitoring and modeling horizontal gene transfer.

Published in:

Nature Biotechnology, 2004, v. 22, n. 9, p. 1110, doi. 10.1038/nbt1006

By:

Nielsen, Kaare M.;
Townsend, Jeffrey P.

Publication type:

Article

Somatic evolutionary timings of driver mutations.

Published in:

2018

By:

Gomez, Karen;
Miura, Sayaka;
Huuki, Louise A.;
Spell, Brianna S.;
Townsend, Jeffrey P.;
Kumar, Sudhir

Publication type:

journal article

Wagging the long tail of drivers of prostate cancer.

Published in:

PLoS Genetics, 2019, v. 15, n. 1, p. 1, doi. 10.1371/journal.pgen.1007820

By:

Cannataro, Vincent L.;
Townsend, Jeffrey P.

Publication type:

Article

Horizontal gene transfer, genome innovation and evolution.

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 9, p. 679, doi. 10.1038/nrmicro1204

By:

Gogarten, J. Peter;
Townsend, Jeffrey P.

Publication type:

Article

Long-oligomer microarray profiling in Neurospora crassa reveals the transcriptional program underlying biochemical and physiological events of conidial germination.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 20, p. 6469, doi. 10.1093/nar/gki953

By:

Kasuga, Takao;
Townsend, Jeffrey P.;
Tian, Chaoguang;
Gilbert, Luz B.;
Mannhaupt, Gertrud;
Taylor, John W.;
Glass, N. Louise

Publication type:

Article

A multigene phylogeny toward a new phylogenetic classification of Leotiomycetes.

Published in:

IMA Fungus, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s43008-019-0002-x

By:

Johnston, Peter R.;
Quijada, Luis;
Smith, Christopher A.;
Baral, Hans-Otto;
Hosoya, Tsuyoshi;
Baschien, Christiane;
Pärtel, Kadri;
Zhuang, Wen-Ying;
Haelewaters, Danny;
Park, Duckchul;
Carl, Steffen;
López-Giráldez, Francesc;
Wang, Zheng;
Townsend, Jeffrey P.

Publication type:

Article

Correction: Harnessing Case Isolation and Ring Vaccination to Control Ebola.

Published in:

2015

By:

Wells, Chad;
Yamin, Dan;
Ndeffo-Mbah, Martial L.;
Wenzel, Natasha;
Gaffney, Stephen G.;
Townsend, Jeffrey P.;
Meyers, Lauren Ancel;
Fallah, Mosoka;
Nyenswah, Tolbert G.;
Altice, Frederick L.;
Atkins, Katherine E.;
Galvani, Alison P.

Publication type:

Correction Notice

Correction: Harnessing Case Isolation and Ring Vaccination to Control Ebola.

Published in:

2015

By:

Wells, Chad;
Yamin, Dan;
Ndeffo-Mbah, Martial L.;
Wenzel, Natasha;
Gaffney, Stephen G.;
Townsend, Jeffrey P.;
Meyers, Lauren Ancel;
Fallah, Mosoka;
Nyenswah, Tolbert G.;
Altice, Frederick L.;
Atkins, Katherine E.;
Galvani, Alison P.

Publication type:

Correction Notice

Harnessing Case Isolation and Ring Vaccination to Control Ebola.

Published in:

PLoS Neglected Tropical Diseases, 2015, v. 9, n. 5, p. 1, doi. 10.1371/journal.pntd.0003794

By:

Wells, Chad;
Yamin, Dan;
Ndeffo-Mbah, Martial L.;
Wenzel, Natasha;
Gaffney, Stephen G.;
Townsend, Jeffrey P.;
Meyers, Lauren Ancel;
Fallah, Mosoka;
Nyenswah, Tolbert G.;
Altice, Frederick L.;
Atkins, Katherine E.;
Galvani, Alison P.

Publication type:

Article

Harnessing Case Isolation and Ring Vaccination to Control Ebola.

Published in:

PLoS Neglected Tropical Diseases, 2015, v. 9, n. 5, p. 1, doi. 10.1371/journal.pntd.0003794

By:

Wells, Chad;
Yamin, Dan;
Ndeffo-Mbah, Martial L.;
Wenzel, Natasha;
Gaffney, Stephen G.;
Townsend, Jeffrey P.;
Meyers, Lauren Ancel;
Fallah, Mosoka;
Nyenswah, Tolbert G.;
Altice, Frederick L.;
Atkins, Katherine E.;
Galvani, Alison P.

Publication type:

Article

Potential Cost-Effectiveness of Schistosomiasis Treatment for Reducing HIV Transmission in Africa – The Case of Zimbabwean Women.

Published in:

PLoS Neglected Tropical Diseases, 2013, v. 7, n. 8, p. 1, doi. 10.1371/journal.pntd.0002346

By:

Ndeffo Mbah, Martial L.;
Poolman, Eric M.;
Atkins, Katherine E.;
Orenstein, Evan W.;
Meyers, Lauren Ancel;
Townsend, Jeffrey P.;
Galvani, Alison P.

Publication type:

Article

Potential for Rabies Control through Dog Vaccination in Wildlife-Abundant Communities of Tanzania.

Published in:

PLoS Neglected Tropical Diseases, 2012, v. 6, n. 8, p. 1, doi. 10.1371/journal.pntd.0001796

By:

Fitzpatrick, Meagan C.;
Hampson, Katie;
Cleaveland, Sarah;
Meyers, Lauren Ancel;
Townsend, Jeffrey P.;
Galvani, Alison P.

Publication type:

Article

Potential for Rabies Control through Dog Vaccination in Wildlife-Abundant Communities of Tanzania.

Published in:

PLoS Neglected Tropical Diseases, 2012, v. 6, n. 8, p. 1, doi. 10.1371/journal.pntd.0001796

By:

Fitzpatrick, Meagan C.;
Hampson, Katie;
Cleaveland, Sarah;
Ancel Meyers, Lauren;
Townsend, Jeffrey P.;
Galvani, Alison P.

Publication type:

Article

Optimal Annual COVID-19 Vaccine Boosting Dates Following Previous Booster Vaccination or Breakthrough Infection.

Published in:

Clinical Infectious Diseases, 2025, v. 80, n. 2, p. 316, doi. 10.1093/cid/ciae559

By:

Townsend, Jeffrey P;
Hassler, Hayley B;
Dornburg, Alex

Publication type:

Article

Implementation of Syringe Services Programs to Prevent Rapid Human Immunodeficiency Virus Transmission in Rural Counties in the United States: A Modeling Study.

Published in:

Clinical Infectious Diseases, 2020, v. 70, n. 6, p. 1096, doi. 10.1093/cid/ciz321

By:

Goedel, William C;
King, Maximilian R F;
Lurie, Mark N;
Galea, Sandro;
Townsend, Jeffrey P;
Galvani, Alison P;
Friedman, Samuel R;
Marshall, Brandon D L

Publication type:

Article

Differential Expression of Cell Wall Remodeling Genes Is Part of the Dynamic Phase-Specific Transcriptional Program of Conidial Germination of Trichoderma asperelloides.

Published in:

Journal of Fungi, 2022, v. 8, n. 8, p. 854, doi. 10.3390/jof8080854

By:

Gortikov, Maggie;
Yakubovich, Elizabeta;
Wang, Zheng;
López-Giráldez, Francesc;
Tu, Yujia;
Townsend, Jeffrey P.;
Yarden, Oded

Publication type:

Article

Origins of lineage‐specific elements via gene duplication, relocation, and regional rearrangement in Neurospora crassa.

Published in:

Molecular Ecology, 2024, v. 33, n. 24, p. 1, doi. 10.1111/mec.17168

By:

Wang, Zheng;
Wang, Yen‐Wen;
Kasuga, Takao;
Hassler, Hayley;
Lopez‐Giraldez, Francesc;
Dong, Caihong;
Yarden, Oded;
Townsend, Jeffrey P.

Publication type:

Article

Comparative Genomics within and across Bilaterians Illuminates the Evolutionary History of ALK and LTK Proto-Oncogene Origination and Diversification.

Published in:

Genome Biology & Evolution, 2021, v. 13, n. 1, p. 1, doi. 10.1093/gbe/evaa228

By:

Dornburg, Alex;
Wang, Zheng;
Wang, Junrui;
Mo, Elizabeth S;
López-Giráldez, Francesc;
Townsend, Jeffrey P

Publication type:

Article

Abundant Gene-by-Environment Interactions in Gene Expression Reaction Norms to Copper within Saccharomyces cerevisiae.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 11, p. 1061, doi. 10.1093/gbe/evs084

By:

Hodgins-Davis, Andrea;
Adomas, Aleksandra B.;
Warringer, Jonas;
Townsend, Jeffrey P.

Publication type:

Article

Abundant Gene-by-Environment Interactions in Gene Expression Reaction Norms to Copper within Saccharomyces cerevisiae.

Published in:

2012

By:

Hodgins-Davis, Andrea;
Adomas, Aleksandra B.;
Warringer, Jonas;
Townsend, Jeffrey P.

Publication type:

Correction Notice

Abundant Gene-by-Environment Interactions in Gene Expression Reaction Norms to Copper within Saccharomyces cerevisiae.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 9, p. 1061, doi. 10.1093/gbe/evs084

By:

Hodgins-Davis, Andrea;
Adomas, Aleksandra B.;
Warringer, Jonas;
Townsend, Jeffrey P.

Publication type:

Article

Abundant Gene-by-Environment Interactions in Gene Expression Reaction Norms to Copper within Saccharomyces cerevisiae.

Published in:

2012

By:

Hodgins-Davis, Andrea;
Adomas, Aleksandra B.;
Warringer, Jonas;
Townsend, Jeffrey P.

Publication type:

Correction Notice

Cost-Effectiveness of Pertussis Vaccination During Pregnancy in the United States.

Published in:

American Journal of Epidemiology, 2016, v. 183, n. 12, p. 1159, doi. 10.1093/aje/kwv347

By:

Atkins, Katherine E.;
Fitzpatrick, Meagan C.;
Galvani, Alison P.;
Townsend, Jeffrey P.

Publication type:

Article

Rare Drivers at Low Prevalence with High Cancer Effects in T-Cell and B-Cell Pediatric Acute Lymphoblastic Leukemia.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 12, p. 6589, doi. 10.3390/ijms25126589

By:

Mandell, Jeffrey D.;
Diviti, Saathvika;
Xu, Mina;
Townsend, Jeffrey P.

Publication type:

Article

PhyInformR: phylogenetic experimental design and phylogenomic data exploration in R.

Published in:

BMC Evolutionary Biology, 2016, v. 16, p. 1, doi. 10.1186/s12862-016-0837-3

By:

Dornburg, Alex;
Fisk, J. Nick;
Tamagnan, Jules;
Townsend, Jeffrey P.

Publication type:

Article

Utility of characters evolving at diverse rates of evolution to resolve quartet trees with unequal branch lengths: analytical predictions of long-branch effects.

Published in:

BMC Evolutionary Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12862-015-0364-7

By:

Zhuo Su;
Townsend, Jeffrey P.

Publication type:

Article

Phylogenetic informativeness reconciles ray-finned fish molecular divergence times.

Published in:

BMC Evolutionary Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/s12862-014-0169-0

By:

Dornburg, Alex;
Townsend, Jeffrey P.;
Friedman, Matt;
Near, Thomas J.

Publication type:

Article

Placing human gene families into their evolutionary context.

Published in:

Human Genomics, 2022, v. 16, n. 1, p. 1, doi. 10.1186/s40246-022-00429-5

By:

Dornburg, Alex;
Mallik, Rittika;
Wang, Zheng;
Bernal, Moisés A.;
Thompson, Brian;
Bruford, Elspeth A.;
Nebert, Daniel W.;
Vasiliou, Vasilis;
Yohe, Laurel R.;
Yoder, Jeffrey A.;
Townsend, Jeffrey P.

Publication type:

Article

Placing human gene families into their evolutionary context.

Published in:

Human Genomics, 2022, v. 16, n. 1, p. 1, doi. 10.1186/s40246-022-00429-5

By:

Dornburg, Alex;
Mallik, Rittika;
Wang, Zheng;
Bernal, Moisés A.;
Thompson, Brian;
Bruford, Elspeth A.;
Nebert, Daniel W.;
Vasiliou, Vasilis;
Yohe, Laurel R.;
Yoder, Jeffrey A.;
Townsend, Jeffrey P.

Publication type:

Article

Northern species of earth tongue genus Thuemenidium revisited, considering morphology, ecology and molecular phylogeny.

Published in:

Mycologia, 2010, v. 102, n. 5, p. 1089, doi. 10.3852/09-317

By:

Ohenoja, Esteri;
Wang, Zheng;
Townsend, Jeffrey P.;
Mitchel, David;
Voitk, Andrus

Publication type:

Article

A phylogenetic approach to study the evolution of somatic mutational processes in cancer.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03560-0

By:

Miura, Sayaka;
Vu, Tracy;
Choi, Jiyeong;
Townsend, Jeffrey P.;
Karim, Sajjad;
Kumar, Sudhir

Publication type:

Article

Infection with alternate frequencies of SARS-CoV-2 vaccine boosting for patients undergoing antineoplastic cancer treatments.

Published in:

JNCI: Journal of the National Cancer Institute, 2023, v. 115, n. 12, p. 1626, doi. 10.1093/jnci/djad158

By:

Townsend, Jeffrey P;
Hassler, Hayley B;
Emu, Brinda;
Dornburg, Alex

Publication type:

Article

Cancer Relevance of Human Genes.

Published in:

2022

By:

Qing, Tao;
Mohsen, Hussein;
Cannataro, Vincent L;
Marczyk, Michal;
Rozenblit, Mariya;
Foldi, Julia;
Murray, Michael;
Townsend, Jeffrey P;
Kluger, Yuval;
Gerstein, Mark;
Pusztai, Lajos

Publication type:

journal article

Bringing Web 2.0 to bioinformatics.

Published in:

Briefings in Bioinformatics, 2009, v. 10, n. 1, p. 1, doi. 10.1093/bib/bbn041

By:

Zhang Zhang;
Kei-Hoi Cheung;
Townsend, Jeffrey P.

Publication type:

Article

A Bayesian method for analysing spotted microarray data.

Published in:

Briefings in Bioinformatics, 2005, v. 6, n. 4, p. 318, doi. 10.1093/bib/6.4.318

By:

Meiklejohn, Colin D.;
Townsend, Jeffrey P.

Publication type:

Article

Varying the intensity of cystoscopic surveillance for high‐risk non‐muscle‐invasive bladder cancer.

Published in:

BJU International, 2025, v. 135, n. 1, p. 148, doi. 10.1111/bju.16521

By:

Su, Zhuo Tony;
Florissi, Isabella S.;
Mahon, Katherine M.;
Li, Taibo;
Rezaee, Michael E.;
Singla, Nirmish;
Patel, Sunil H.;
Townsend, Jeffrey P.;
Kates, Max R.

Publication type:

Article

Environmental and sex-specific molecular signatures of glioma causation.

Published in:

Neuro-Oncology, 2022, v. 24, n. 1, p. 29, doi. 10.1093/neuonc/noab103

By:

Claus, Elizabeth B;
Cannataro, Vincent L;
Gaffney, Stephen G;
Townsend, Jeffrey P

Publication type:

Article

Analyses of expressed sequence tags in Neurospora reveal rapid evolution of genes associated with the early stages of sexual reproduction in fungi.

Published in:

BMC Evolutionary Biology, 2012, v. 12, n. 1, p. 1, doi. 10.1186/1471-2148-12-229

By:

Nygren, Kristiina;
Wallberg, Andreas;
Samils, Nicklas;
Stajich, Jason E.;
Townsend, Jeffrey P.;
Karlsson, Magnus;
Johannesson, Hanna

Publication type:

Article

PhyDesign: an online application for profiling phylogenetic informativeness.

Published in:

BMC Evolutionary Biology, 2011, v. 11, n. 1, p. 152, doi. 10.1186/1471-2148-11-152

By:

López-Giráldez, Francesc;
Townsend, Jeffrey P.

Publication type:

Article

Attribution of Cancer Origins to Endogenous, Exogenous, and Preventable Mutational Processes.

Published in:

Molecular Biology & Evolution, 2022, v. 39, n. 5, p. 1, doi. 10.1093/molbev/msac084

By:

Cannataro, Vincent L.;
Mandell, Jeffrey D.;
Townsend, Jeffrey P.

Publication type:

Article

Unmatched Level of Molecular Convergence among Deeply Divergent Complex Multicellular Fungi.

Published in:

Molecular Biology & Evolution, 2020, v. 37, n. 8, p. 2228, doi. 10.1093/molbev/msaa077

By:

Merényi, Zsolt;
Prasanna, Arun N;
Wang, Zheng;
Kovács, Károly;
Hegedüs, Botond;
Bálint, Balázs;
Papp, Balázs;
Townsend, Jeffrey P;
Nagy, László G

Publication type:

Article

Molecular Biology and Evolution of Cancer: From Discovery to Action.

Published in:

Molecular Biology & Evolution, 2020, v. 37, n. 2, p. 320, doi. 10.1093/molbev/msz242

By:

Somarelli, Jason A;
Gardner, Heather;
Cannataro, Vincent L;
Gunady, Ella F;
Boddy, Amy M;
Johnson, Norman A;
Fisk, Jeffrey Nicholas;
Gaffney, Stephen G;
Chuang, Jeffrey H;
Li, Sheng;
Ciccarelli, Francesca D;
Panchenko, Anna R;
Megquier, Kate;
Kumar, Sudhir;
Dornburg, Alex;
DeGregori, James;
Townsend, Jeffrey P

Publication type:

Article

Neutral Theory and the Somatic Evolution of Cancer.

Published in:

Molecular Biology & Evolution, 2018, v. 35, n. 6, p. 1308, doi. 10.1093/molbev/msy079

By:

Cannataro, Vincent L;
Townsend, Jeffrey P

Publication type:

Article

Detection of Regional Variation in Selection Intensity within Protein-Coding Genes Using DNA Sequence Polymorphism and Divergence.

Published in:

Molecular Biology & Evolution, 2017, v. 34, n. 11, p. 3006, doi. 10.1093/molbev/msx213

By:

Zi-Ming Zhao;
Campbell, Michael C.;
Ning Li;
Lee, Daniel S. W.;
Zhang Zhang;
Townsend, Jeffrey P.

Publication type:

Article

Gene Expression Evolves under a House-of-Cards Model of Stabilizing Selection.

Published in:

Molecular Biology & Evolution, 2015, v. 32, n. 8, p. 2130, doi. 10.1093/molbev/msv094

By:

Hodgins-Davis, Andrea;
Rice, Daniel P.;
Townsend, Jeffrey P.

Publication type:

Article