Works matching AU Toufiq, Mohammed

Results: 25

Design of a targeted blood transcriptional panel for monitoring immunological changes accompanying pregnancy.

Published in:

Frontiers in Immunology, 2024, p. 1, doi. 10.3389/fimmu.2024.1319949

By:

Brummaier, Tobias;
Rinchai, Darawan;
Toufiq, Mohammed;
Karim, Mohammed Y.;
Habib, Tanwir;
Utzinger, Jürg;
Paris, Daniel H.;
McGready, Rose;
Marr, Alexandra K.;
Kino, Tomoshige;
Terranegra, Annalisa;
Al Khodor, Souhaila;
Chaussabel, Damien;
Kabeer, Basirudeen Syed Ahamed

Publication type:

Article

Abundance of ACVR1B transcript is elevated during septic conditions: Perspectives obtained from a hands-on reductionist investigation.

Published in:

Frontiers in Immunology, 2023, v. 14, p. 01, doi. 10.3389/fimmu.2023.1072732

By:

Anucha Preechanukul;
Thatcha Yimthin;
Sarunporn Tandhavanant;
Brummaier, Tobias;
Chalita Chomkatekaew;
Sukanta Das;
Ahamed Kabeer, Basirudeen Syed;
Mohammed Toufiq;
Rinchai, Darawan;
West, T. Eoin;
Chaussabel, Damien;
Narisara Chantratita;
Garand, Mathieu

Publication type:

Article

Influence of storage conditions of small volumes of blood on immune transcriptomic profiles.

Published in:

BMC Research Notes, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s13104-020-04980-z

By:

Mathew, Rebecca;
Toufiq, Mohammed;
Mattei, Valentina;
Al Hashmi, Muna;
Shobha Manjunath, Harshitha;
Syed Ahamed Kabeer, Basirudeen;
Calzone, Rita;
Cugno, Chiara;
Chaussabel, Damien;
Deola, Sara;
Tomei, Sara

Publication type:

Article

BloodGen3Module: blood transcriptional module repertoire analysis and visualization using R.

Published in:

Bioinformatics, 2021, v. 37, n. 16, p. 2382, doi. 10.1093/bioinformatics/btab121

By:

Rinchai, Darawan;
Roelands, Jessica;
Toufiq, Mohammed;
Hendrickx, Wouter;
Altman, Matthew C;
Bedognetti, Davide;
Chaussabel, Damien

Publication type:

Article

Understanding the Role of GLUT2 in Dysglycemia Associated with Fanconi–Bickel Syndrome.

Published in:

Biomedicines, 2022, v. 10, n. 9, p. 2114, doi. 10.3390/biomedicines10092114

By:

Sharari, Sanaa;
Kabeer, Basirudeen;
Mohammed, Idris;
Haris, Basma;
Pavlovski, Igor;
Hawari, Iman;
Bhat, Ajaz Ahmad;
Toufiq, Mohammed;
Tomei, Sara;
Mathew, Rebecca;
Syed, Najeeb;
Nisar, Sabah;
Maacha, Selma;
Grivel, Jean-Charles;
Chaussabel, Damien;
Ericsson, Johan;
Hussain, Khalid

Publication type:

Article

Human-augmented large language model-driven selection of glutathione peroxidase 4 as a candidate blood transcriptional biomarker for circulating erythroid cells.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-73916-5

By:

Subba, Bishesh;
Toufiq, Mohammed;
Omi, Fuadur;
Yurieva, Marina;
Khan, Taushif;
Rinchai, Darawan;
Palucka, Karolina;
Chaussabel, Damien

Publication type:

Article

Human-augmented large language model-driven selection of glutathione peroxidase 4 as a candidate blood transcriptional biomarker for circulating erythroid cells.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-73916-5

By:

Subba, Bishesh;
Toufiq, Mohammed;
Omi, Fuadur;
Yurieva, Marina;
Khan, Taushif;
Rinchai, Darawan;
Palucka, Karolina;
Chaussabel, Damien

Publication type:

Article

Development of a fixed module repertoire for the analysis and interpretation of blood transcriptome data.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24584-w

By:

Altman, Matthew C.;
Rinchai, Darawan;
Baldwin, Nicole;
Toufiq, Mohammed;
Whalen, Elizabeth;
Garand, Mathieu;
Syed Ahamed Kabeer, Basirudeen;
Alfaki, Mohamed;
Presnell, Scott R.;
Khaenam, Prasong;
Ayllón-Benítez, Aaron;
Mougin, Fleur;
Thébault, Patricia;
Chiche, Laurent;
Jourde-Chiche, Noemie;
Phillips, J. Theodore;
Klintmalm, Goran;
O'Garra, Anne;
Berry, Matthew;
Bloom, Chloe

Publication type:

Article

Deciphering the Role of Kruppel-like Factor 9 in Sepsis and Immunity: Perspectives from Joint Collective Omics Data and a Literature Review.

Published in:

Texila International Journal of Public Health, 2025, v. 13, n. 1, p. 1, doi. 10.21522/TIJPH.2013.13.01.Art092

By:

Alfaki, Mohamed;
Toufiq, Mohammed;
S., Kaavya;
Mathayan, Manikannan;
Palaniappan, Alangudi Natarajan;
Deenadayalan, Anbarasu;
Bethunaickan, Ramalingam;
Boughorbel, Sabri;
Zerbib, Yoann;
Rinchai, Darawan;
Garand, Mathieu;
Chaussabel, Damien;
Ahamed Kabeer, Basirudeen Syed

Publication type:

Article

Transcriptomic profile investigations highlight a putative role for NUDT16 in sepsis.

Published in:

Journal of Cellular & Molecular Medicine, 2022, v. 26, n. 5, p. 1714, doi. 10.1111/jcmm.17240

By:

Huang, Susie Shih Yin;
Rinchai, Darawan;
Toufiq, Mohammed;
Kabeer, Basirudeen Syed Ahamed;
Roelands, Jessica;
Hendrickx, Wouter;
Boughorbel, Sabri;
Bedognetti, Davide;
Van Panhuys, Nicholas;
Chaussabel, Damien;
Garand, Mathieu

Publication type:

Article

Immunomodulatory Effects of Vitamin D Supplementation in a Deficient Population.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 9, p. 5041, doi. 10.3390/ijms22095041

By:

Garand, Mathieu;
Toufiq, Mohammed;
Singh, Parul;
Huang, Susie Shih Yin;
Tomei, Sara;
Mathew, Rebecca;
Mattei, Valentina;
Al Wakeel, Mariam;
Sharif, Elham;
Al Khodor, Souhaila;
Provost, Patrick

Publication type:

Article

The integrative genomic and functional immunological analyses of colorectal cancer initiating cells to modulate stemness properties and the susceptibility to immune responses.

Published in:

Journal of Translational Medicine, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12967-025-06176-0

By:

Tout, Issam;
Bougarn, Salim;
Toufiq, Mohammed;
Gopinath, Neha;
Hussein, Ola;
Sathappan, Abbirami;
Chin-Smith, Evonne;
Rehaman, Fazulur;
Mathew, Rebecca;
Mathew, Lisa;
Wang, Kun;
Liu, Li;
Salhab, Abdulrahman;
Soloviov, Oleksandr;
Tomei, Sara;
Hasan, Waseem;
Da'as, Sahar;
Bejaoui, Yosra;
Hajj, Nady El;
Maalej, Karama Makni

Publication type:

Article

Annexin A3 in sepsis: novel perspectives from an exploration of public transcriptome data.

Published in:

Immunology, 2020, v. 161, n. 4, p. 291, doi. 10.1111/imm.13239

By:

Toufiq, Mohammed;
Roelands, Jessica;
Alfaki, Mohamed;
Syed Ahamed Kabeer, Basirudeen;
Saadaoui, Marwa;
Lakshmanan, Arun Prasath;
Bangarusamy, Dhinoth Kumar;
Murugesan, Selvasankar;
Bedognetti, Davide;
Hendrickx, Wouter;
Al Khodor, Souhaila;
Terranegra, Annalisa;
Rinchai, Darawan;
Chaussabel, Damien;
Garand, Mathieu

Publication type:

Article

Harnessing large language models (LLMs) for candidate gene prioritization and selection.

Published in:

Journal of Translational Medicine, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12967-023-04576-8

By:

Toufiq, Mohammed;
Rinchai, Darawan;
Bettacchioli, Eleonore;
Kabeer, Basirudeen Syed Ahamed;
Khan, Taushif;
Subba, Bishesh;
White, Olivia;
Yurieva, Marina;
George, Joshy;
Jourde-Chiche, Noemie;
Chiche, Laurent;
Palucka, Karolina;
Chaussabel, Damien

Publication type:

Article

Transcriptome and Literature Mining Highlight the Differential Expression of ERLIN1 in Immune Cells during Sepsis.

Published in:

Biology (2079-7737), 2021, v. 10, n. 8, p. 755, doi. 10.3390/biology10080755

By:

Huang, Susie S. Y.;
Toufiq, Mohammed;
Saraiva, Luis R.;
Van Panhuys, Nicholas;
Chaussabel, Damien;
Garand, Mathieu

Publication type:

Article

The molecular landscape of sepsis severity in infants: enhanced coagulation, innate immunity, and T cell repression.

Published in:

Frontiers in Immunology, 2024, p. 01, doi. 10.3389/fimmu.2024.1281111

By:

Shih Yin Huang, Susie;
Toufiq, Mohammed;
Eghtesady, Pirooz;
Van Panhuys, Nicholas;
Garand, Mathieu

Publication type:

Article

Transketolase and vitamin B1 influence on ROS-dependent neutrophil extracellular traps (NETs) formation.

Published in:

PLoS ONE, 2019, v. 14, n. 8, p. 1, doi. 10.1371/journal.pone.0221016

By:

Riyapa, Donporn;
Rinchai, Darawan;
Muangsombut, Veerachat;
Wuttinontananchai, Chayanin;
Toufiq, Mohammed;
Chaussabel, Damien;
Ato, Manabu;
Blackwell, Jenefer M.;
Korbsrisate, Sunee

Publication type:

Article

A Neutrophil-Driven Inflammatory Signature Characterizes the Blood Transcriptome Fingerprint of Psoriasis.

Published in:

Frontiers in Immunology, 2020, v. 11, p. N.PAG, doi. 10.3389/fimmu.2020.587946

By:

Rawat, Arun;
Rinchai, Darawan;
Toufiq, Mohammed;
Marr, Alexandra K.;
Kino, Tomoshige;
Garand, Mathieu;
Tatari-Calderone, Zohreh;
Kabeer, Basirudeen Syed Ahamed;
Krishnamoorthy, Navaneethakrishnan;
Bedognetti, Davide;
Karim, Mohammed Yousuf;
Sastry, Konduru S.;
Chaussabel, Damien

Publication type:

Article

Whole-Blood Longitudinal Molecular Profiling Maps the Road of Graft Versus Host Disease (GVHD).

Published in:

Cancers, 2025, v. 17, n. 5, p. 802, doi. 10.3390/cancers17050802

By:

Bar, Merav;
El Anbari, Mohammed;
Rinchai, Darawan;
Toufiq, Mohammed;
Kizhakayil, Dhanya;
Manjunath, Harshitha S.;
Mathew, Rebecca;
Cavattoni, Irene;
Forer, Sabine;
Recla, Marco;
Bibawi, Hani;
Alater, Ahmad;
Yahia, Reem;
Brown, Clarisa;
Miles, Nancy L.;
Vo, Phuong;
Bedognetti, Davide;
Tomei, Sara;
Saleh, Ayman;
Cugno, Chiara

Publication type:

Article

A data browsing application for accessing gene and module-level blood transcriptome profiles of healthy pregnant women from high- and low-resource settings.

Published in:

Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae021

By:

Rinchai, Darawan;
Brummaier, Tobias;
Marr, Alexandra A;
Habib, Tanwir;
Toufiq, Mohammed;
Kino, Tomoshigue;
Nosten, François;
Khodor, Souhaila Al;
Terranegra, Annalisa;
McGready, Rose;
Kabeer, Basirudeen Syed Ahamed;
Chaussabel, Damien

Publication type:

Article

A curated collection of transcriptome datasets to investigate the molecular mechanisms of immunoglobulin E-mediated atopic diseases.

Published in:

Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz066

By:

Huang, Susie S Y;
Ali, Fatima Al;
Boughorbel, Sabri;
Toufiq, Mohammed;
Chaussabel, Damien;
Garand, Mathieu

Publication type:

Article

From gene modules to gene markers: an integrated AI-human approach selects CD38 to represent plasma cell-associated transcriptional signatures.

Published in:

Frontiers in Medicine, 2025, p. 1, doi. 10.3389/fmed.2025.1510431

By:

Syed Ahamed Kabeer, Basirudeen;
Subba, Bishesh;
Rinchai, Darawan;
Toufiq, Mohammed;
Khan, Taushif;
Yurieva, Marina;
Chaussabel, Damien

Publication type:

Article

Long-Chain Acyl-CoA Synthetase 1 Role in Sepsis and Immunity: Perspectives From a Parallel Review of Public Transcriptome Datasets and of the Literature.

Published in:

Frontiers in Immunology, 2019, p. 1, doi. 10.3389/fimmu.2019.02410

By:

Roelands, Jessica;
Garand, Mathieu;
Hinchcliff, Emily;
Ma, Ying;
Shah, Parin;
Toufiq, Mohammed;
Alfaki, Mohamed;
Hendrickx, Wouter;
Boughorbel, Sabri;
Rinchai, Darawan;
Jazaeri, Amir;
Bedognetti, Davide;
Chaussabel, Damien

Publication type:

Article

A modular framework for the development of targeted Covid-19 blood transcript profiling panels.

Published in:

2020

By:

Rinchai, Darawan;
Syed Ahamed Kabeer, Basirudeen;
Toufiq, Mohammed;
Tatari-Calderone, Zohreh;
Deola, Sara;
Brummaier, Tobias;
Garand, Mathieu;
Branco, Ricardo;
Baldwin, Nicole;
Alfaki, Mohamed;
Altman, Matthew C.;
Ballestrero, Alberto;
Bassetti, Matteo;
Zoppoli, Gabriele;
De Maria, Andrea;
Tang, Benjamin;
Bedognetti, Davide;
Chaussabel, Damien

Publication type:

journal article

Modeling, simulation and control of the dynamics of a Heptads' effect evaporator system used in the Kraft recovery processes.

Published in:

Transactions of the Institute of Measurement & Control, 2018, v. 40, n. 7, p. 2278, doi. 10.1177/0142331217700239

By:

Verma, Om Prakash;
Mohammed, Toufiq Hazi;
Mangal, Shubham;
Manik, Gaurav

Publication type:

Article