Works by Toprak, Umut H.

Results: 12
    1

    The genomic and transcriptional landscape of primary central nervous system lymphoma.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30050-y
    By:
    • Radke, Josefine;
    • Ishaque, Naveed;
    • Koll, Randi;
    • Gu, Zuguang;
    • Schumann, Elisa;
    • Sieverling, Lina;
    • Uhrig, Sebastian;
    • Hübschmann, Daniel;
    • Toprak, Umut H.;
    • López, Cristina;
    • Hostench, Xavier Pastor;
    • Borgoni, Simone;
    • Juraeva, Dilafruz;
    • Pritsch, Fabienne;
    • Paramasivam, Nagarajan;
    • Balasubramanian, Gnana Prakash;
    • Schlesner, Matthias;
    • Sahay, Shashwat;
    • Weniger, Marc;
    • Pehl, Debora
    Publication type:
    Article
    2
    3

    Kalirin-RAC controls nucleokinetic migration in ADRN-type neuroblastoma.

    Published in:
    Life Science Alliance, 2021, v. 4, n. 5, p. 1, doi. 10.26508/lsa.201900332
    By:
    • Afanasyeva, Elena A.;
    • Gartlgruber, Moritz;
    • Ryl, Tatsiana;
    • Decaesteker, Bieke;
    • Denecker, Geertrui;
    • Mönke, Gregor;
    • Toprak, Umut H.;
    • Florez, Andres;
    • Torkov, Alica;
    • Dreidax, Daniel;
    • Herrmann, Carl;
    • Okonechnikov, Konstantin;
    • Ek, Sara;
    • Sharma, Ashwini Kumar;
    • Sagulenko, Vitaliya;
    • Speleman, Frank;
    • Henrich, Kai-Oliver;
    • Westermann, Frank
    Publication type:
    Article
    4

    Whole genome sequencing puts forward hypotheses on metastasis evolution and therapy in colorectal cancer.

    Published in:
    Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07041-z
    By:
    • Ishaque, Naveed;
    • Abba, Mohammed L.;
    • Hauser, Christine;
    • Patil, Nitin;
    • Paramasivam, Nagarajan;
    • Huebschmann, Daniel;
    • Leupold, Jörg Hendrik;
    • Balasubramanian, Gnana Prakash;
    • Kleinheinz, Kortine;
    • Toprak, Umut H.;
    • Hutter, Barbara;
    • Benner, Axel;
    • Shavinskaya, Anna;
    • Zhou, Chan;
    • Gu, Zuguang;
    • Kerssemakers, Jules;
    • Marx, Alexander;
    • Moniuszko, Marcin;
    • Kozlowski, Miroslaw;
    • Reszec, Joanna
    Publication type:
    Article
    5

    Alternative lengthening of telomeres in childhood neuroblastoma from genome to proteome.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21247-8
    By:
    • Hartlieb, Sabine A.;
    • Sieverling, Lina;
    • Nadler-Holly, Michal;
    • Ziehm, Matthias;
    • Toprak, Umut H.;
    • Herrmann, Carl;
    • Ishaque, Naveed;
    • Okonechnikov, Konstantin;
    • Gartlgruber, Moritz;
    • Park, Young-Gyu;
    • Wecht, Elisa Maria;
    • Savelyeva, Larissa;
    • Henrich, Kai-Oliver;
    • Rosswog, Carolina;
    • Fischer, Matthias;
    • Hero, Barbara;
    • Jones, David T. W.;
    • Pfaff, Elke;
    • Witt, Olaf;
    • Pfister, Stefan M.
    Publication type:
    Article
    6

    Globally altered epigenetic landscape and delayed osteogenic differentiation in H3.3-G34W-mutant giant cell tumor of bone.

    Published in:
    Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-18955-y
    By:
    • Lutsik, Pavlo;
    • Baude, Annika;
    • Mancarella, Daniela;
    • Öz, Simin;
    • Kühn, Alexander;
    • Toth, Reka;
    • Hey, Joschka;
    • Toprak, Umut H.;
    • Lim, Jinyeong;
    • Nguyen, Viet Ha;
    • Jiang, Chao;
    • Mayakonda, Anand;
    • Hartmann, Mark;
    • Rosemann, Felix;
    • Breuer, Kersten;
    • Vonficht, Dominik;
    • Grünschläger, Florian;
    • Lee, Suman;
    • Schuhmacher, Maren Kirstin;
    • Kusevic, Denis
    Publication type:
    Article
    7

    T‐cell prolymphocytic leukemia is associated with deregulation of oncogenic microRNAs on transcriptional and epigenetic level.

    Published in:
    Genes, Chromosomes & Cancer, 2022, v. 61, n. 7, p. 432, doi. 10.1002/gcc.23034
    By:
    • Patil, Paurnima;
    • Hillebrecht, Sina;
    • Chteinberg, Emil;
    • López, Cristina;
    • Toprak, Umut H.;
    • Seufert, Julian;
    • Bernhart, Stephan H.;
    • Kretzmer, Helene;
    • Bergmann, Anke K.;
    • Bens, Susanne;
    • Högel, Josef;
    • Müller, Annika;
    • Jebaraj, Billy Michael;
    • Schrader, Alexandra;
    • Johansson, Patricia;
    • Costa, Dolors;
    • Schlesner, Matthias;
    • Dürig, Jan;
    • Herling, Marco;
    • Campo, Elias
    Publication type:
    Article
    8

    Reconstruction of rearranged T‐cell receptor loci by whole genome and transcriptome sequencing gives insights into the initial steps of T‐cell prolymphocytic leukemia.

    Published in:
    Genes, Chromosomes & Cancer, 2020, v. 59, n. 4, p. 261, doi. 10.1002/gcc.22821
    By:
    • Patil, Paurnima;
    • Cieslak, Agata;
    • Bernhart, Stephan H.;
    • Toprak, Umut H.;
    • Wagener, Rabea;
    • López, Cristina;
    • Wiehle, Laura;
    • Bens, Susanne;
    • Altmüller, Janine;
    • Franitza, Marek;
    • Scholz, Ingrid;
    • Jayne, Sandrine;
    • Ahearne, Matthew J.;
    • Scheffold, Annika;
    • Jebaraj, Billy M. C.;
    • Schneider, Christof;
    • Costa, Dolors;
    • Braun, Till;
    • Schrader, Alexandra;
    • Campo, Elias
    Publication type:
    Article
    9
    10

    Genomic and transcriptomic changes complement each other in the pathogenesis of sporadic Burkitt lymphoma.

    Published in:
    Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-08578-3
    By:
    • López, Cristina;
    • Kleinheinz, Kortine;
    • Aukema, Sietse M.;
    • Rohde, Marius;
    • Bernhart, Stephan H.;
    • Hübschmann, Daniel;
    • Wagener, Rabea;
    • Toprak, Umut H.;
    • Raimondi, Francesco;
    • Kreuz, Markus;
    • Waszak, Sebastian M.;
    • Huang, Zhiqin;
    • Sieverling, Lina;
    • Paramasivam, Nagarajan;
    • Seufert, Julian;
    • Sungalee, Stephanie;
    • Russell, Robert B.;
    • Bausinger, Julia;
    • Kretzmer, Helene;
    • Ammerpohl, Ole
    Publication type:
    Article
    11

    Mutational patterns and regulatory networks in epigenetic subgroups of meningioma.

    Published in:
    Acta Neuropathologica, 2019, v. 138, n. 2, p. 295, doi. 10.1007/s00401-019-02008-w
    By:
    • Paramasivam, Nagarajan;
    • Hübschmann, Daniel;
    • Toprak, Umut H;
    • Ishaque, Naveed;
    • Neidert, Marian;
    • Schrimpf, Daniel;
    • Stichel, Damian;
    • Reuss, David;
    • Sievers, Philipp;
    • Reinhardt, Annekathrin;
    • Wefers, Annika K.;
    • Jones, David T. W.;
    • Gu, Zuguang;
    • Werner, Johannes;
    • Uhrig, Sebastian;
    • Wirsching, Hans-Georg;
    • Schick, Matthias;
    • Bewerunge-Hudler, Melanie;
    • Beck, Katja;
    • Brehmer, Stephanie
    Publication type:
    Article
    12

    Exploration of whole genome and transcriptome sequencing data lacks evidence for oncogenic viral elements to drive the pathogenesis of T-cell prolymphocytic leukemia.

    Published in:
    Leukemia & Lymphoma, 2022, v. 63, n. 13, p. 3253, doi. 10.1080/10428194.2022.2116933
    By:
    • Patil, Paurnima;
    • Toprak, Umut H.;
    • Seufert, Julian;
    • Braun, Till;
    • Bernhart, Stephan H.;
    • Wiehle, Laura;
    • Müller, Annika;
    • Schlesner, Matthias;
    • Herling, Marco;
    • Lichter, Peter;
    • Stilgenbauer, Stephan;
    • Siebert, Reiner;
    • Zapatka, Marc
    Publication type:
    Article