Works by Tonelli, Marco

Results: 64

I-PINE web server: an integrative probabilistic NMR assignment system for proteins.

Published in:

Journal of Biomolecular NMR, 2019, v. 73, n. 5, p. 213, doi. 10.1007/s10858-019-00255-3

By:

Lee, Woonghee;
Bahrami, Arash;
Dashti, Hesam T.;
Eghbalnia, Hamid R.;
Tonelli, Marco;
Westler, William M.;
Markley, John L.

Publication type:

Article

Optimization of H decoupling eliminates sideband artifacts in 3D TROSY-based triple resonance experiments.

Published in:

Journal of Biomolecular NMR, 2017, v. 69, n. 1, p. 45, doi. 10.1007/s10858-017-0133-6

By:

Xia, Youlin;
Rossi, Paolo;
Tonelli, Marco;
Huang, Chengdong;
Kalodimos, Charalampos;
Veglia, Gianluigi

Publication type:

Article

Integrative NMR for biomolecular research.

Published in:

Journal of Biomolecular NMR, 2016, v. 64, n. 4, p. 307, doi. 10.1007/s10858-016-0029-x

By:

Lee, Woonghee;
Cornilescu, Gabriel;
Dashti, Hesam;
Eghbalnia, Hamid;
Tonelli, Marco;
Westler, William;
Butcher, Samuel;
Henzler-Wildman, Katherine;
Markley, John

Publication type:

Article

Probabilistic validation of protein NMR chemical shift assignments.

Published in:

Journal of Biomolecular NMR, 2016, v. 64, n. 1, p. 17, doi. 10.1007/s10858-015-0007-8

By:

Dashti, Hesam;
Tonelli, Marco;
Lee, Woonghee;
Westler, William;
Cornilescu, Gabriel;
Ulrich, Eldon;
Markley, John

Publication type:

Article

NMRFAM-SDF: a protein structure determination framework.

Published in:

Journal of Biomolecular NMR, 2015, v. 62, n. 4, p. 481, doi. 10.1007/s10858-015-9933-8

By:

Dashti, Hesam;
Lee, Woonghee;
Tonelli, Marco;
Cornilescu, Claudia;
Cornilescu, Gabriel;
Assadi-Porter, Fariba;
Westler, William;
Eghbalnia, Hamid;
Markley, John

Publication type:

Article

ADAPT-NMR 3.0: utilization of BEST-type triple-resonance NMR experiments to accelerate the process of data collection and assignment.

Published in:

Journal of Biomolecular NMR, 2015, v. 62, n. 3, p. 247, doi. 10.1007/s10858-015-9950-7

By:

Dashti, Hesam;
Tonelli, Marco;
Markley, John

Publication type:

Article

Hydrogen exchange during cell-free incorporation of deuterated amino acids and an approach to its inhibition.

Published in:

Journal of Biomolecular NMR, 2011, v. 51, n. 4, p. 467, doi. 10.1007/s10858-011-9575-4

By:

Tonelli, Marco;
Singarapu, Kiran;
Makino, Shin-ichi;
Sahu, Sarata;
Matsubara, Yuko;
Endo, Yaeta;
Kainosho, Masatsune;
Markley, John

Publication type:

Article

Carbonyl carbon label selective (CCLS) 1H–15N HSQC experiment for improved detection of backbone 13C–15N cross peaks in larger proteins.

Published in:

Journal of Biomolecular NMR, 2007, v. 39, n. 3, p. 177, doi. 10.1007/s10858-007-9185-3

By:

Tonelli, Marco;
Masterson, Larry;
Hallenga, Klaas;
Veglia, Gianluigi;
Markley, John

Publication type:

Article

HIFI-C: a robust and fast method for determining NMR couplings from adaptive 3D to 2D projections.

Published in:

Journal of Biomolecular NMR, 2007, v. 38, n. 4, p. 341, doi. 10.1007/s10858-007-9173-7

By:

Cornilescu, Gabriel;
Bahrami, Arash;
Tonelli, Marco;
Markley, John;
Eghbalnia, Hamid

Publication type:

Article

Resonance assignments for the two N-terminal RNA recognition motifs (RRM) of the S. cerevisiae Pre-mRNA Processing Protein Prp24.

Published in:

Journal of Biomolecular NMR, 2006, v. 36, p. 58, doi. 10.1007/s10858-006-9039-4

By:

Reiter, Nicholas;
Lee, Donghan;
Wang, Yun-Xing;
Tonelli, Marco;
Bahrami, Arash;
Cornilescu, Claudia;
Butcher, Samuel

Publication type:

Article

Assessing the functional roles of coevolving PHD finger residues.

Published in:

Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 7, p. 1, doi. 10.1002/pro.5065

By:

Basu, Shraddha;
Subedi, Ujwal;
Tonelli, Marco;
Afshinpour, Maral;
Tiwari, Nitija;
Fuentes, Ernesto J.;
Chakravarty, Suvobrata

Publication type:

Article

Solution structure and dynamics of the mitochondrial‐targeted GTPase‐activating protein (GAP) VopE by an integrated NMR/SAXS approach.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 5, p. 1, doi. 10.1002/pro.4282

By:

Smith, Kyle P.;
Lee, Woonghee;
Tonelli, Marco;
Lee, Yeongjoon;
Light, Samuel H.;
Cornilescu, Gabriel;
Chakravarthy, Srinivas

Publication type:

Article

Function and solution structure of the Arabidopsis thaliana RALF8 peptide.

Published in:

Protein Science: A Publication of the Protein Society, 2019, v. 28, n. 6, p. 1115, doi. 10.1002/pro.3628

By:

Frederick, Ronnie O.;
Haruta, Miyoshi;
Tonelli, Marco;
Lee, Woonghee;
Cornilescu, Gabriel;
Cornilescu, Claudia C.;
Sussman, Michael R.;
Markley, John L.

Publication type:

Article

Multimodal Ligand Binding Studies of Human and Mouse G-Coupled Taste Receptors to Correlate Their Species-Specific Sweetness Tasting Properties.

Published in:

Molecules, 2018, v. 23, n. 10, p. 2531, doi. 10.3390/molecules23102531

By:

Assadi-Porter, Fariba M.;
Radek, James;
Rao, Hongyu;
Tonelli, Marco;
Volkman, Brian F.

Publication type:

Article

Probing Protein-Protein Interactions Using Asymmetric Labeling and Carbonyl-Carbon Selective Heteronuclear NMR Spectroscopy.

Published in:

Molecules, 2018, v. 23, n. 8, p. 1937, doi. 10.3390/molecules23081937

By:

Volkman, Brian F.;
Larsen, Erik K.;
Gao, Jiali;
Veglia, Gianluigi;
Olivieri, Cristina;
Walker, Caitlin;
V.S., Manu;
Bernlohr, David A.;
Tonelli, Marco;
Markley, John L.

Publication type:

Article

Serine protease dynamics revealed by NMR analysis of the thrombin-thrombomodulin complex.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-88432-z

By:

Peacock, Riley B.;
McGrann, Taylor;
Tonelli, Marco;
Komives, Elizabeth A.

Publication type:

Article

Impact of Remdesivir on SARS-CoV-2 Clearance in a Real-Life Setting: A Matched-Cohort Study.

Published in:

Drug Design, Development & Therapy, 2022, v. 16, p. 3645, doi. 10.2147/DDDT.S369473

By:

Spagnuolo, Vincenzo;
Voarino, Marta;
Tonelli, Marco;
Galli, Laura;
Poli, Andrea;
Bruzzesi, Elena;
Racca, Sara;
Clementi, Nicola;
Oltolini, Chiara;
Tresoldi, Moreno;
Querini, Patrizia Rovere;
Dagna, Lorenzo;
Zangrillo, Alberto;
Ciceri, Fabio;
Clementi, Massimo;
Castagna, Antonella

Publication type:

Article

Factors Predicting 2 Years of Remission and Low Disease Activity in Rheumatoid Arthritis Patients Treated with TNF-inhibitors.

Published in:

Israel Medical Association Journal, 2017, v. 19, n. 8, p. 467

By:

Conigliaro, Paola;
Triggianese, Paola;
Chimenti, Maria Sole;
Tonelli, Marco;
Sunzini, Flavia;
Kroegler, Barbara;
Perricone, Roberto

Publication type:

Article

Chemoenzymatic synthesis of daptomycin analogs active against daptomycin-resistant strains.

Published in:

Applied Microbiology & Biotechnology, 2020, v. 104, n. 18, p. 7853, doi. 10.1007/s00253-020-10790-x

By:

Scull, Erin M.;
Bandari, Chandrasekhar;
Johnson, Bryce P.;
Gardner, Eric D.;
Tonelli, Marco;
You, Jianlan;
Cichewicz, Robert H.;
Singh, Shanteri

Publication type:

Article

New Multitarget Approaches in the War Against Glioblastoma: A Mini-Perspective.

Published in:

Frontiers in Pharmacology, 2018, p. 1, doi. 10.3389/fphar.2018.00874

By:

Sestito, Simona;
Runfola, Massimiliano;
Tonelli, Marco;
Chiellini, Grazia;
Rapposelli, Simona

Publication type:

Article

Chemoenzymatic Modification of Daptomycin: Aromatic Group Installation on Trp1.

Published in:

ChemBioChem, 2024, v. 25, n. 22, p. 1, doi. 10.1002/cbic.202400503

By:

Dimas, Dustin A.;
Kumar, Vikas;
Mandal, Prashant S.;
Masterson, Johanna M.;
Tonelli, Marco;
Singh, Shanteri

Publication type:

Article

Rapid Biocatalytic Synthesis of Aromatic Acid CoA Thioesters by Using Microbial Aromatic Acid CoA Ligases.

Published in:

ChemBioChem, 2023, v. 24, n. 9, p. 1, doi. 10.1002/cbic.202300001

By:

Chaudhury, Debayan;
Torkelson, Ella R.;
Meyers, Kaya A.;
Acheson, Justin F.;
Landucci, Leta;
Pu, Yucen;
Sun, Zimou;
Tonelli, Marco;
Bingman, Craig A.;
Smith, Rebecca A.;
Karlen, Steven D.;
Mansfield, Shawn D.;
Ralph, John;
Fox, Brian G.

Publication type:

Article

Author Correction: Membrane lipids drive formation of KRAS4b-RAF1 RBDCRD nanoclusters on the membrane.

Published in:

2024

By:

Shrestha, Rebika;
Carpenter, Timothy S.;
Van, Que N.;
Agamasu, Constance;
Tonelli, Marco;
Aydin, Fikret;
Chen, De;
Gulten, Gulcin;
Glosli, James N.;
López, Cesar A.;
Oppelstrup, Tomas;
Neale, Chris;
Gnanakaran, Sandrasegaram;
Gillette, William K.;
Ingólfsson, Helgi I.;
Lightstone, Felice C.;
Stephen, Andrew G.;
Streitz, Frederick H.;
Nissley, Dwight V.;
Turbyville, Thomas J.

Publication type:

Correction Notice

Membrane lipids drive formation of KRAS4b-RAF1 RBDCRD nanoclusters on the membrane.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-05916-0

By:

Shrestha, Rebika;
Carpenter, Timothy S.;
Van, Que N.;
Agamasu, Constance;
Tonelli, Marco;
Aydin, Fikret;
Chen, De;
Gulten, Gulcin;
Glosli, James N.;
López, Cesar A.;
Oppelstrup, Tomas;
Neale, Chris;
Gnanakaran, Sandrasegaram;
Gillette, William K.;
Ingólfsson, Helgi I.;
Lightstone, Felice C.;
Stephen, Andrew G.;
Streitz, Frederick H.;
Nissley, Dwight V.;
Turbyville, Thomas J.

Publication type:

Article

Solution structure of human myeloid-derived growth factor suggests a conserved function in the endoplasmic reticulum.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-13577-5

By:

Bortnov, Valeriu;
Tonelli, Marco;
Lee, Woonghee;
Lin, Ziqing;
Annis, Douglas S.;
Demerdash, Omar N.;
Bateman, Alex;
Mitchell, Julie C.;
Ge, Ying;
Markley, John L.;
Mosher, Deane F.

Publication type:

Article

Structure and evolution of the 4-helix bundle domain of Zuotin, a J-domain protein co-chaperone of Hsp70.

Published in:

PLoS ONE, 2019, v. 14, n. 5, p. 1, doi. 10.1371/journal.pone.0217098

By:

Shrestha, Om Kumar;
Sharma, Ruchika;
Tomiczek, Bartlomiej;
Lee, Woonghee;
Tonelli, Marco;
Cornilescu, Gabriel;
Stolarska, Milena;
Nierzwicki, Lukasz;
Czub, Jacek;
Markley, John L.;
Marszalek, Jaroslaw;
Ciesielski, Szymon J.;
Craig, Elizabeth A.

Publication type:

Article

Broadening the functionality of a J-protein/Hsp70 molecular chaperone system.

Published in:

PLoS Genetics, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pgen.1007084

By:

Schilke, Brenda A.;
Ciesielski, Szymon J.;
Ziegelhoffer, Thomas;
Kamiya, Erina;
Tonelli, Marco;
Lee, Woonghee;
Cornilescu, Gabriel;
Hines, Justin K.;
Markley, John L.;
Craig, Elizabeth A.

Publication type:

Article

Very high SARS-CoV-2 load at the emergency department presentation strongly predicts the risk of admission to the intensive care unit and death.

Published in:

2021

By:

Mancini, Nicasio;
Clementi, Nicola;
Ferrarese, Roberto;
Ambrosi, Alessandro;
Tonelli, Marco;
Zangrillo, Alberto;
Landoni, Giovanni;
Clementi, Massimo

Publication type:

Letter

Lower nasopharyngeal viral load during the latest phase of COVID-19 pandemic in a Northern Italy University Hospital.

Published in:

Clinical Chemistry & Laboratory Medicine, 2020, v. 58, n. 9, p. 1573, doi. 10.1515/cclm-2020-0815

By:

Clementi, Nicola;
Ferrarese, Roberto;
Tonelli, Marco;
Amato, Virginia;
Racca, Sara;
Locatelli, Massimo;
Lippi, Giuseppe;
Silvestri, Guido;
Clementi, Massimo;
Mancini, Nicasio

Publication type:

Article

Backbone and side chain chemical shift assignment of diisopropyl fluorophosphatase (DFPase) from Loligo vulgaris, an organophosphorus-degrading enzyme.

Published in:

Biomolecular NMR Assignments, 2023, v. 17, n. 1, p. 55, doi. 10.1007/s12104-023-10120-y

By:

Chen, Julian C.-H.;
Tonelli, Marco;
Anderson, Penelope;
Michalczyk, Ryszard;
Blum, Marc-Michael;
Williams, Robert F.

Publication type:

Article

NMR 1H, 13C, 15N backbone resonance assignments of the T35S and oncogenic T35S/Q61L mutants of human KRAS4b in the active, GppNHp-bound conformation.

Published in:

Biomolecular NMR Assignments, 2022, v. 16, n. 1, p. 1, doi. 10.1007/s12104-021-10050-7

By:

Sharma, Alok K.;
Dyba, Marcin;
Tonelli, Marco;
Smith, Brian;
Gillette, William K.;
Esposito, Dominic;
Nissley, Dwight V.;
McCormick, Frank;
Maciag, Anna E.

Publication type:

Article

1H, 13C, and 15N backbone and side chain chemical shift assignments of the SARS-CoV-2 non-structural protein 7.

Published in:

Biomolecular NMR Assignments, 2021, v. 15, n. 1, p. 73, doi. 10.1007/s12104-020-09985-0

By:

Tonelli, Marco;
Rienstra, Chad;
Anderson, Thomas K.;
Kirchdoerfer, Rob;
Henzler-Wildman, Katherine

Publication type:

Article

Backbone and sidechain resonance assignments and secondary structure of Scc4 from Chlamydia trachomatis.

Published in:

Biomolecular NMR Assignments, 2020, v. 14, n. 2, p. 301, doi. 10.1007/s12104-020-09965-4

By:

Ukwaththage, Thilini O.;
Tonelli, Marco;
Macnaughtan, Megan A.

Publication type:

Article

Backbone resonance assignments and secondary structure of Ebola nucleoprotein 600–739 construct.

Published in:

Biomolecular NMR Assignments, 2019, v. 13, n. 2, p. 315, doi. 10.1007/s12104-019-09898-7

By:

Lee, Woonghee;
Tonelli, Marco;
Wu, Chao;
Aceti, David J.;
Amarasinghe, Gaya K.;
Markley, John L.

Publication type:

Article

Assignments of RNase A by ADAPT-NMR and enhancer.

Published in:

Biomolecular NMR Assignments, 2015, v. 9, n. 1, p. 81, doi. 10.1007/s12104-014-9549-z

By:

Tonelli, Marco;
Eller, Chelcie;
Singarapu, Kiran;
Lee, Woonghee;
Bahrami, Arash;
Westler, William;
Raines, Ronald;
Markley, John

Publication type:

Article

Backbone NMR resonance assignment of the catalytic subunit of cAMP-dependent protein kinase A in complex with AMP-PNP.

Published in:

Biomolecular NMR Assignments, 2009, v. 3, n. 1, p. 115, doi. 10.1007/s12104-009-9154-8

By:

Masterson, Larry;
Shi, Lei;
Tonelli, Marco;
Mascioni, Alessandro;
Mueller, Michael;
Veglia, Gianluigi

Publication type:

Article

A cryptic K48 ubiquitin chain binding site on UCH37 is required for its role in proteasomal degradation.

Published in:

eLife, 2022, p. 1, doi. 10.7554/eLife.76100

By:

Jiale Du;
Babik, Sandor;
Yanfeng Li;
Deol, Kirandeep K.;
Eyles, Stephen J.;
Fejzo, Jasna;
Tonelli, Marco;
Strieter, Eric

Publication type:

Article

Coordination of Di-Acetylated Histone Ligands by the ATAD2 Bromodomain.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 17, p. 9128, doi. 10.3390/ijms22179128

By:

Evans, Chiara M.;
Phillips, Margaret;
Malone, Kiera L.;
Tonelli, Marco;
Cornilescu, Gabriel;
Cornilescu, Claudia;
Holton, Simon J.;
Gorjánácz, Mátyás;
Wang, Liping;
Carlson, Samuel;
Gay, Jamie C.;
Nix, Jay C.;
Demeler, Borries;
Markley, John L.;
Glass, Karen C.

Publication type:

Article

Metabolic Reprogramming by 3-Iodothyronamine (T1AM): A New Perspective to Reverse Obesity through Co-Regulation of Sirtuin 4 and 6 Expression.

Published in:

International Journal of Molecular Sciences, 2018, v. 19, n. 5, p. 1535, doi. 10.3390/ijms19051535

By:

Assadi-Porter, Fariba M.;
Reiland, Hannah;
Sabatini, Martina;
Lorenzini, Leonardo;
Carnicelli, Vittoria;
Rogowski, Micheal;
Selen Alpergin, Ebru S.;
Tonelli, Marco;
Ghelardoni, Sandra;
Saba, Alessandro;
Zucchi, Riccardo;
Chiellini, Grazia

Publication type:

Article

NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1325, doi. 10.1093/bioinformatics/btu830

By:

Woonghee Lee;
Tonelli, Marco;
Markley, John L.

Publication type:

Article

NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy.

Published in:

2015

By:

Woonghee Lee;
Tonelli, Marco;
Markley, John L.

Publication type:

Product Review

NMR-Based Identification of Metabolites in Polar and Non-Polar Extracts of Avian Liver.

Published in:

Metabolites (2218-1989), 2017, v. 7, n. 4, p. 61, doi. 10.3390/metabo7040061

By:

Fathi, Fariba;
Brun, Antonio;
Rott, Katherine H.;
Cobra, Paulo Falco;
Tonelli, Marco;
Eghbalnia, Hamid R.;
Caviedes-Vidal, Enrique;
Karasov, William H.;
Markley, John L.

Publication type:

Article

Structural Role of the Terminal Disulfide Bond in the Sweetness of Brazzein.

Published in:

Chemical Senses, 2011, v. 36, n. 9, p. 821, doi. 10.1093/chemse/bjr057

By:

Dittli, Sannali M.;
Rao, Hongyu;
Tonelli, Marco;
Quijada, Jeniffer;
Markley, John L.;
Max, Marianna;
Assadi-Porter, Fariba

Publication type:

Article

Comparative structural and functional analysis of the glycine-rich regions of Class A and B J-domain protein cochaperones of Hsp70.

Published in:

FEBS Letters, 2024, v. 598, n. 12, p. 1465, doi. 10.1002/1873-3468.14857

By:

Ciesielski, Szymon J.;
Schilke, Brenda A.;
Stolarska, Milena;
Tonelli, Marco;
Tomiczek, Bartlomiej;
Craig, Elizabeth A.

Publication type:

Article

Metamorphic protein IscU alternates conformations in the course of its role as the scaffold protein for iron–sulfur cluster biosynthesis and delivery.

Published in:

FEBS Letters, 2013, v. 587, n. 8, p. 1172, doi. 10.1016/j.febslet.2013.01.003

By:

Markley, John L.;
Kim, Jin Hae;
Dai, Ziqi;
Bothe, Jameson R.;
Cai, Kai;
Frederick, Ronnie O.;
Tonelli, Marco

Publication type:

Article

Structure and Function of a Fungal Adhesin that Binds Heparin and Mimics Thrombospondin-1 by Blocking T Cell Activation and Effector Function.

Published in:

PLoS Pathogens, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.ppat.1003464

By:

Brandhorst, T. Tristan;
Roy, René;
Wüthrich, Marcel;
Nanjappa, Som;
Filutowicz, Hanna;
Galles, Kevin;
Tonelli, Marco;
McCaslin, Darrell R.;
Satyshur, Kenneth;
Klein, Bruce

Publication type:

Article

Beauveria bassiana Keratitis: A Case Series and Review of Literature.

Published in:

Journal of Clinical Medicine, 2023, v. 12, n. 24, p. 7601, doi. 10.3390/jcm12247601

By:

Knutsson, Karl Anders;
Rama, Paolo;
Tombolini, Beatrice;
Di Biase, Carlo;
Senni, Carlotta;
Buffoli, Fabio;
Clementi, Nicola;
Tonelli, Marco;
Carletti, Silvia;
Mancini, Nicasio;
Ferrari, Giulio;
Paganoni, Giorgio;
Bandello, Francesco

Publication type:

Article

NMR reveals a dynamic allosteric pathway in thrombin.

Published in:

Scientific Reports, 2017, p. 39575, doi. 10.1038/srep39575

By:

Handley, Lindsey D.;
Fuglestad, Brian;
Stearns, Kyle;
Tonelli, Marco;
Fenwick, R. Bryn;
Markwick, Phineus R. L.;
Komives, Elizabeth A.

Publication type:

Article

Solution NMR Determination of the CDHR3 Rhinovirus-C Binding Domain, EC1.

Published in:

Viruses (1999-4915), 2021, v. 13, n. 2, p. 159, doi. 10.3390/v13020159

By:

Lee, Woonghee;
Frederick, Ronnie O.;
Tonelli, Marco;
Palmenberg, Ann C.;
McLean, Gary

Publication type:

Article

Solution Structural Studies of GTP:Adenosylcobinamide-Phosphateguanylyl Transferase (CobY) from Methanocaldococcus jannaschii.

Published in:

PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0141297

By:

Singarapu, Kiran K.;
Otte, Michele M.;
Tonelli, Marco;
Westler, William M.;
Escalante-Semerena, Jorge C.;
Markley, John L.

Publication type:

Article