Works by Tomoki Chiba

Results: 73

Transcription activator-like effector nuclease-mediated transduction of exogenous gene into IL2RG locus.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep05043

By:

Matsubara, Yohei;
Chiba, Tomoki;
Kashimada, Kenichi;
Morio, Tomohiro;
Takada, Shuji;
Mizutani, Shuki;
Asahara, Hiroshi

Publication type:

Article

Analysis of the Mouse Y Chromosome by Single-Molecule Sequencing With Y Chromosome Enrichment.

Published in:

Frontiers in Genetics, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00406

By:

Yano, Yuki;
Chiba, Tomoki;
Asahara, Hiroshi

Publication type:

Article

Developmentally regulated, alternative splicing of the Rpn10 gene generates multiple forms of 26S proteasomes.

Published in:

EMBO Journal, 2000, v. 19, n. 15, p. 4144, doi. 10.1093/emboj/19.15.4144

By:

Kawahara, Hiroyuki;
Kasahara, Masanori;
Nishiyama, Atsuya;
Ohsumi, Keita;
Goto, Tetsuya;
Kishimoto, Takeo;
Saeki, Yasushi;
Yokosawa, Hideyoshi;
Shimbara, Naoki;
Murata, Shigeo;
Chiba, Tomoki;
Suzuki, Koichi;
Tanaka, Keiji

Publication type:

Article

Covalent modifier NEDD8 is essential for SCF ubiquitin-ligase in fission yeast.

Published in:

EMBO Journal, 2000, v. 19, n. 13, p. 3475, doi. 10.1093/emboj/19.13.3475

By:

Osaka, Fumio;
Saeki, Mihoro;
Katayama, Satoshi;
Aida, Noriko;
Toh-e, Akio;
Kominami, Kin-ichiro;
Toda, Takashi;
Suzuki, Toshiaki;
Chiba, Tomoki;
Tanaka, Keiji;
Kato, Seishi

Publication type:

Article

Climate-mediated changes in predator–prey interactions in the fossil record: a case study using shell-drilling gastropods from the Pleistocene Japan Sea.

Published in:

2016

By:

Chiba, Tomoki;
Sato, Shin’ichi

Publication type:

Case Study

Functional validation of epitope-tagged ATF5 knock-in mice generated by improved genome editing of oviductal nucleic acid delivery (i-GONAD).

Published in:

Cell & Tissue Research, 2021, v. 385, n. 1, p. 239, doi. 10.1007/s00441-021-03450-7

By:

Nakano, Haruo;
Kawai, Shiori;
Ooki, Yusaku;
Chiba, Tomoki;
Ishii, Chiharu;
Nozawa, Takumi;
Utsuki, Hisako;
Umemura, Mariko;
Takahashi, Shigeru;
Takahashi, Yuji

Publication type:

Article

Dioxin receptor is a ligand-dependent E3 ubiquitin ligase.

Published in:

2007

By:

Ohtake, Fumiaki;
Baba, Atsushi;
Takada, Ichiro;
Okada, Maiko;
Iwasaki, Kei;
Miki, Hiromi;
Takahashi, Sayuri;
Kouzmenko, Alexander;
Nohara, Keiko;
Chiba, Tomoki;
Fujii-Kuriyama, Yoshiaki;
Kato, Shigeaki

Publication type:

Letter

Loss of autophagy in the central nervous system causes neurodegeneration in mice.

Published in:

2006

By:

Komatsu, Masaaki;
Waguri, Satoshi;
Chiba, Tomoki;
Murata, Shigeo;
Iwata, Jun-ichi;
Tanida, Isei;
Ueno, Takashi;
Koike, Masato;
Uchiyama, Yasuo;
Kominami, Eiki;
Tanaka, Keiji

Publication type:

Letter

One‐step generation of mice with gene editing by Tol2 transposon‐dependent gRNA delivery.

Published in:

FEBS Letters, 2023, v. 597, n. 7, p. 975, doi. 10.1002/1873-3468.14605

By:

Inotsume, Maiko;
Chiba, Tomoki;
Matsushima, Takahide;
Kurimoto, Ryota;
Nakajima, Mitsuyo;
Kato, Tomomi;
Shishido, Kana;
Liu, Lin;
Kawakami, Koichi;
Asahara, Hiroshi

Publication type:

Article

Identification of chemical compounds regulating PD‐L1 by introducing HiBiT‐tagged cells.

Published in:

FEBS Letters, 2021, v. 595, n. 5, p. 563, doi. 10.1002/1873-3468.14032

By:

Uchida, Yutaro;
Matsushima, Takahide;
Kurimoto, Ryota;
Chiba, Tomoki;
Inutani, Yuki;
Asahara, Hiroshi

Publication type:

Article

Recognizing cryptic environmental changes by using paleoecology and taphonomy of Pleistocene bivalve assemblages in the Oga Peninsula, northern Japan.

Published in:

Quaternary Research, 2014, v. 81, n. 1, p. 21, doi. 10.1016/j.yqres.2013.10.015

By:

Chiba, Tomoki;
Shirai, Masaaki;
Sato, Shin'ichi

Publication type:

Article

Analysis of Knock-Out Mice to Determine the Role of HPC-1/Syntaxin 1A in Expressing Synaptic Plasticity.

Published in:

Journal of Neuroscience, 2006, v. 26, n. 21, p. 5767, doi. 10.1523/JNEUROSCI.0289-06.2006

By:

Fujiwara, Tomonori;
Mishima, Tatsuya;
Kofuji, Takefumi;
Chiba, Tomoki;
Tanaka, Keiji;
Yamamoto, Akitsugu;
Akagawa, Kimio

Publication type:

Article

Familial Parkinson disease gene product, parkin, is a ubiquitin-protein ligase.

Published in:

Nature Genetics, 2000, v. 25, n. 3, p. 302, doi. 10.1038/77060

By:

Shimura, Hideki;
Hattori, Nobutaka;
Kubo, Shin-ichiro;
Mizuno, Yoshikuni;
Asakawa, Shuichi;
Minoshima, Shinsei;
Shimizu, Nobuyoshi;
Iwai, Kazuhiro;
Chiba, Tomoki;
Tanaka, Keiji;
Suzuki, Toshiaki

Publication type:

Article

USP15 Deubiquitinates TUT1 Associated with RNA Metabolism and Maintains Cerebellar Homeostasis.

Published in:

Molecular & Cellular Biology, 2020, v. 40, n. 21, p. 1, doi. 10.1128/MCB.00098-20

By:

Jaehyun Kim;
Junnosuke Nakamura;
Chiharu Hamada;
Takumi Taketomi;
Sarasa Yano;
Tomomi Okajima;
Shin-ichi Kashiwabara;
Tadashi Baba;
Ban Sato;
Tomoki Chiba;
Fuminori Tsurutaa

Publication type:

Article

A Countermeasure Method Using Poisonous Data Against Poisoning Attacks on IoT Machine Learning.

Published in:

International Journal of Semantic Computing, 2021, v. 15, n. 02, p. 215, doi. 10.1142/S1793351X21400043

By:

Chiba, Tomoki;
Sei, Yuichi;
Tahara, Yasuyuki;
Ohsuga, Akihiko

Publication type:

Article

Structural Changes in Molluscan Community over a 15-Year Period before and after the 2011 Great East Japan Earthquake and Subsequent Tsunami around Matsushima Bay, Miyagi Prefecture, Northeastern Japan.

Published in:

PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0168206

By:

Sato, Shin’ichi;
Chiba, Tomoki

Publication type:

Article

Cartilage Homeostasis and Osteoarthritis.

Published in:

2022

By:

Fujii, Yuta;
Liu, Lin;
Yagasaki, Lisa;
Inotsume, Maiko;
Chiba, Tomoki;
Asahara, Hiroshi

Publication type:

Literature Review

Bioluminescence Assay for Detecting Cell Surface Membrane Protein Expression.

Published in:

Assay & Drug Development Technologies, 2011, v. 9, n. 1, p. 31, doi. 10.1089/adt.2010.0278

By:

Mieko Kato;
Tomoki Chiba;
Min Li;
Yoshiro Hanyu

Publication type:

Article

A new ubiquitin ligase involved in p57KIP2 proteolysis regulates osteoblast cell differentiation.

Published in:

EMBO Reports, 2008, v. 9, n. 9, p. 878, doi. 10.1038/embor.2008.125

By:

Kim, Minsoo;
Nakamoto, Takashi;
Nishimori, Shigeki;
Tanaka, Keiji;
Chiba, Tomoki

Publication type:

Article

CHIP is a chaperone-dependent E3 ligase that ubiquitylates unfolded protein.

Published in:

EMBO Reports, 2001, v. 2, n. 12, p. 1133, doi. 10.1093/embo-reports/kve246

By:

Murata, Shigeo;
Minami, Yasufumi;
Minami, Michiko;
Chiba, Tomoki;
Tanaka, Keiji

Publication type:

Article

Impairment of starvation-induced and constitutive autophagy in Atg7-deficient mice.

Published in:

Journal of Cell Biology, 2005, v. 169, n. 3, p. 425, doi. 10.1083/jcb.200412022

By:

Komafsu, Masaaki;
Waguri, Satoshi;
Ueno, Takashi;
Iwata, Junichi;
Murata, Shigeo;
Tanida, Isei;
Ezaki, Junji;
Mizushima, Noboru;
Ohsumi, Yoshinori;
Uchiyama, Yasuo;
Kominami, Eiki;
Tanaka, Keiji;
Chiba, Tomoki

Publication type:

Article

The NEDD8 system is essential for cell cycle progression and morphogenetic pathway in mice.

Published in:

Journal of Cell Biology, 2001, v. 155, n. 4, p. 571, doi. 10.1083/jcb.200104035

By:

Tateishi, Keisuke;
Omata, Masao;
Tanaka, Keiji;
Chiba, Tomoki

Publication type:

Article

Deletion of skeletal muscle Akt1/2 causes osteosarcopenia and reduces lifespan in mice.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33008-2

By:

Sasako, Takayoshi;
Umehara, Toshihiro;
Soeda, Kotaro;
Kaneko, Kazuma;
Suzuki, Miho;
Kobayashi, Naoki;
Okazaki, Yukiko;
Tamura-Nakano, Miwa;
Chiba, Tomoki;
Accili, Domenico;
Kahn, C. Ronald;
Noda, Tetsuo;
Asahara, Hiroshi;
Yamauchi, Toshimasa;
Kadowaki, Takashi;
Ueki, Kohjiro

Publication type:

Article

Decline of striatal dopamine release in parkin‐deficient mice shown by ex vivo autoradiography.

Published in:

Journal of Neuroscience Research, 2006, v. 84, n. 6, p. 1350, doi. 10.1002/jnr.21032

By:

Shigeto Sato;
Tomoki Chiba;
Shingo Nishiyama;
Takeharu Kakiuchi;
Hideo Tsukada;
Taku Hatano;
Takahiro Fukuda;
Yasunobu Yasoshima;
Nobuyuki Kai;
Kazuto Kobayashi;
Yoshikuni Mizuno;
Keiji Tanaka;
Nobutaka Hattori

Publication type:

Article

The tRNA pseudouridine synthase TruB1 regulates the maturation of let‐7 miRNA.

Published in:

EMBO Journal, 2020, v. 39, n. 20, p. 1, doi. 10.15252/embj.2020104708

By:

Kurimoto, Ryota;
Chiba, Tomoki;
Ito, Yoshiaki;
Matsushima, Takahide;
Yano, Yuki;
Miyata, Kohei;
Yashiro, Yuka;
Suzuki, Tsutomu;
Tomita, Kozo;
Asahara, Hiroshi

Publication type:

Article

Complementary Critical Functions of Zfy1 and Zfy2 in Mouse Spermatogenesis and Reproduction.

Published in:

PLoS Genetics, 2017, v. 13, n. 1, p. 1, doi. 10.1371/journal.pgen.1006578

By:

Nakasuji, Takashi;
Ogonuki, Narumi;
Chiba, Tomoki;
Kato, Tomomi;
Shiozawa, Kumiko;
Yamatoya, Kenji;
Tanaka, Hiromitsu;
Kondo, Tadashi;
Miyado, Kenji;
Miyasaka, Naoyuki;
Kubota, Toshiro;
Ogura, Atsuo;
Asahara, Hiroshi

Publication type:

Article

Post-transcriptional regulation of inflammation by RNA-binding proteins via cis-elements of mRNAs.

Published in:

Journal of Biochemistry, 2019, v. 166, n. 5, p. 375, doi. 10.1093/jb/mvz067

By:

Uchida, Yutaro;
Chiba, Tomoki;
Kurimoto, Ryota;
Asahara, Hiroshi

Publication type:

Article

KIAA0368-deficiency affects disassembly of 26S proteasome under oxidative stress condition.

Published in:

Journal of Biochemistry, 2016, v. 159, n. 6, p. 609, doi. 10.1093/jb/mvw006

By:

Kousuke Haratake;
Akitsugu Sato;
Fuminori Tsuruta;
Tomoki Chiba

Publication type:

Article

Smad7-deficient mice show growth retardation with reduced viability.

Published in:

Journal of Biochemistry, 2012, v. 151, n. 6, p. 621, doi. 10.1093/jb/mvs022

By:

Tojo, Masayoshi;
Takebe, Ai;
Takahashi, Satoru;
Tanaka, Keiji;
Imamura, Takeshi;
Miyazono, Kohei;
Chiba, Tomoki

Publication type:

Article

IκBL, a novel member of the nuclear IκB family, inhibits inflammatory cytokine expression

Published in:

FEBS Letters, 2011, v. 585, n. 22, p. 3577, doi. 10.1016/j.febslet.2011.10.024

By:

Chiba, Tomoki;
Miyashita, Keiko;
Sugoh, Tatsuya;
Warita, Takayuki;
Inoko, Hidetoshi;
Kimura, Minoru;
Sato, Takehito

Publication type:

Article

SCFFbl12 Increases p21Waf1/Cip1 Expression Level through Atypical Ubiquitin Chain Synthesis.

Published in:

Molecular & Cellular Biology, 2016, v. 36, n. 16, p. 2182, doi. 10.1128/MCB.00174-16

By:

Fuminori Tsuruta;
Ai Takebe;
Kousuke Haratake;
Yoshinori Kanemori;
Jaehyun Kim;
Tomoyuki Endo;
Yu Kigoshi;
Tomomi Fukuda;
Hatsumi Miyahara;
Manato Ebina;
Tadashi Baba;
Tomoki Chiba

Publication type:

Article

PML Activates Transcription by Protecting HIPK2 and p300 from SCFFbx3-Mediated Degradation.

Published in:

Molecular & Cellular Biology, 2008, v. 28, n. 23, p. 13

By:

Shima, Yutaka;
Shima, Takito;
Chiba, Tomoki;
Irimura, Tatsuro;
Pandolfi, Pier Paolo;
Kitabayashi, Issay

Publication type:

Article

Invasion of Laguncula pulchella (Gastropoda: Naticidae) and predator-prey interactions with bivalves on the Tona coast, Miyagi prefecture, northern Japan.

Published in:

Biological Invasions, 2013, v. 15, n. 3, p. 587, doi. 10.1007/s10530-012-0310-1

By:

Chiba, Tomoki;
Sato, Shin'ichi

Publication type:

Article

Parkin is linked to the ubiquitin pathway.

Published in:

Journal of Molecular Medicine, 2001, v. 79, n. 9, p. 482, doi. 10.1007/s001090100242

By:

Tanaka, Keiji;
Suzuki, Toshiaki;
Chiba, Tomoki;
Shimura, Hideki;
Hattori, Nobutaka;
Mizuno, Yoshikuni

Publication type:

Article

Impact of mechanotransduction on gene expression changes in periodontal ligament during orthodontic tooth movement.

Published in:

Journal of Bone & Mineral Metabolism, 2025, v. 43, n. 3, p. 216, doi. 10.1007/s00774-025-01581-3

By:

Chida, Suzu;
Chiba, Tomoki;
Uchida, Yutaro;
Matsushima, Takahide;
Kurimoto, Ryota;
Miyazaki, Takayuki;
Yagasaki, Lisa;
Nakamura, Satoshi;
Mihara, Emiko;
Takagi, Junichi;
Moriyama, Keiji;
Asahara, Hiroshi

Publication type:

Article

Mkx regulates the orthodontic tooth movement via osteoclast induction.

Published in:

Journal of Bone & Mineral Metabolism, 2021, v. 39, n. 5, p. 780, doi. 10.1007/s00774-021-01233-2

By:

Miyazaki, Takayuki;
Kurimoto, Ryota;
Chiba, Tomoki;
Matsushima, Takahide;
Nakamichi, Ryo;
Tsutsumi, Hiroki;
Takada, Kaho;
Yagasaki, Lisa;
Kato, Tomomi;
Shishido, Kana;
Kobayashi, Yukiho;
Matsumoto, Tsutomu;
Moriyama, Keiji;
Asahara, Hiroshi

Publication type:

Article

Tyrosine kinase activation through the extracellular domains of cytokine receptors.

Published in:

Nature, 1993, v. 362, n. 6421, p. 646, doi. 10.1038/362646a0

By:

Chiba, Tomoki;
Nagata, Yuka

Publication type:

Article

Proteasome-Associated Proteins, PA200 and ECPAS, Are Essential for Murine Spermatogenesis.

Published in:

Biomolecules (2218-273X), 2023, v. 13, n. 4, p. 586, doi. 10.3390/biom13040586

By:

Sato, Ban;
Kim, Jiwoo;
Morohoshi, Kazunori;
Kang, Woojin;
Miyado, Kenji;
Tsuruta, Fuminori;
Kawano, Natsuko;
Chiba, Tomoki

Publication type:

Article

Induction of Th1-biased cytokine production by α-carba-GalCer, a neoglycolipid ligand for NKT cells.

Published in:

International Immunology, 2010, v. 22, n. 4, p. 319, doi. 10.1093/intimm/dxq012

By:

Tashiro, Takuya;
Sekine-Kondo, Etsuko;
Shigeura, Tomokuni;
Nakagawa, Ryusuke;
Inoue, Sayo;
Omori-Miyake, Miyuki;
Chiba, Tomoki;
Hongo, Naomi;
Fujii, Shin-ichiro;
Shimizu, Kanako;
Yoshiga, Yohei;
Sumida, Takayuki;
Mori, Kenji;
Watarai, Hiroshi;
Taniguchi, Masaru

Publication type:

Article

The ubiquitin–proteasome system plays essential roles in presenting an 8-mer CTL epitope expressed in APC to corresponding CD8+ T cells.

Published in:

International Immunology, 2006, v. 18, n. 5, p. 679, doi. 10.1093/intimm/dxl005

By:

Xuefeng Duan;
Hajime Hisaeda;
Jianying Shen;
Liping Tu;
Takashi Imai;
Bin Chou;
Shigeo Murata;
Tomoki Chiba;
Keiji Tanaka;
Hans Jörg Fehling;
Takaomi Koga;
Katsuo Sueishi;
Kunisuke Himeno

Publication type:

Article

Proteasome activator PA200 maintains stability of histone marks during transcription and aging.

Published in:

Theranostics, 2021, v. 11, n. 3, p. 1458, doi. 10.7150/thno.48744

By:

Tian-Xia Jiang;
Shuang Ma;
Xia Han;
Zi-Yu Luo;
Qian-Qian Zhu;
Tomoki Chiba;
Wei Xie;
Kui Lin;
Xiao-Bo Qiu

Publication type:

Article

Interplay of transcription factors in T-cell differentiation and function: the role of Runx.

Published in:

Immunology, 2011, v. 132, n. 2, p. 157, doi. 10.1111/j.1365-2567.2010.03381.x

By:

Wong, Won Fen;
Kohu, Kazuyoshi;
Chiba, Tomoki;
Sato, Takehito;
Satake, Masanobu

Publication type:

Article

Ubiquitin-fusion degradation pathway plays an indispensable role in naked DNA vaccination with a chimeric gene encoding a syngeneic cytotoxic T lymphocyte epitope of melanocyte and green fluorescent protein.

Published in:

Immunology, 2004, v. 112, n. 4, p. 567, doi. 10.1111/j.1365-2567.2004.01916.x

By:

Manxin Zhang;
Kazunari Ishii;
Hisaeda, Hajime;
Murata, Shigeo;
Chiba, Tomoki;
Tanaka, Keiji;
Yang Li;
Obata, Chikage;
Furue, Masutaka;
Himeno, Kunisuke

Publication type:

Article

Size-selective predation and drillhole-site selectivity in Euspira fortunei (Gastropoda: Naticidae): implications for ecological and palaeoecological studies.

Published in:

Journal of Molluscan Studies, 2012, v. 78, n. 2, p. 205, doi. 10.1093/mollus/eys002

By:

Chiba, Tomoki;
Sato, Shin'Ichi

Publication type:

Article

Long-term fluctuations in mollusk populations before and after the appearance of the alien predator Euspira fortunei on the Tona coast, Miyagi Prefecture, northern Japan.

Published in:

Fisheries Science, 2012, v. 78, n. 3, p. 589, doi. 10.1007/s12562-012-0491-7

By:

Sato, Shin'ichi;
Chiba, Tomoki;
Hasegawa, Hiromi

Publication type:

Article

Covalent modification of all members of human cullin family proteins by NEDD8.

Published in:

Oncogene, 1999, v. 18, n. 48, p. 6829, doi. 10.1038/sj.onc.1203093

By:

Hori, Tomoko;
Osaka, Fumio;
Chiba, Tomoki;
Miyamoto, Chikara;
Okabayashi, Ken;
Shimbara, Naoki;
Kato, Seishi;
Tanaka, Keiji

Publication type:

Article

Role of nuclear IκBs in inflammation regulation.

Published in:

Biomolecular Concepts, 2013, v. 4, n. 2, p. 187, doi. 10.1515/bmc-2012-0039

By:

Chiba, Tomoki;
Inoko, Hidetoshi;
Kimura, Minoru;
Sato, Takehito

Publication type:

Article

14-3-3η is a novel regulator of parkin ubiquitin ligase.

Published in:

EMBO Journal, 2006, v. 25, n. 1, p. 211, doi. 10.1038/sj.emboj.7600774

By:

Sato, Shigeto;
Chiba, Tomoki;
Sakata, Eri;
Kato, Koichi;
Mizuno, Yoshikuni;
Hattori, Nobutaka;
Tanaka, Keiji

Publication type:

Article

Ligand-dependent switching of ubiquitin-proteasome pathways for estrogen receptor.

Published in:

EMBO Journal, 2004, v. 23, n. 24, p. 4813, doi. 10.1038/sj.emboj.7600472

By:

Tateishi, Yukiyo;
Kawabe, Yoh-ichi;
Chiba, Tomoki;
Murata, Shigeo;
Ichikawa, Ken;
Murayama, Akiko;
Tanaka, Keiji;
Baba, Tadashi;
Kato, Shigeaki;
Yanagisawa, Junn

Publication type:

Article

A novel protein-conjugating system for Ufm1, a ubiquitin-fold modifier.

Published in:

EMBO Journal, 2004, v. 23, n. 9, p. 1977, doi. 10.1038/sj.emboj.7600205

By:

Komatsu, Masaaki;
Chiba, Tomoki;
Tatsumi, Kanako;
Iemura, Shun-ichiro;
Tanida, Isei;
Okazaki, Noriko;
Ueno, Takashi;
Kominami, Eiki;
Natsume, Tohru;
Tanaka, Keiji

Publication type:

Article