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Rab7D small GTPase is involved in phago‐, trogocytosis and cytoskeletal reorganization in the enteric protozoan Entamoeba histolytica.
- Published in:
- Cellular Microbiology, 2021, v. 23, n. 1, p. 1, doi. 10.1111/cmi.13267
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- Publication type:
- Article
Application of Homology Modeling by Enhanced Profile–Profile Alignment and Flexible-Fitting Simulation to Cryo-EM Based Structure Determination.
- Published in:
- International Journal of Molecular Sciences, 2022, v. 23, n. 4, p. 1977, doi. 10.3390/ijms23041977
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- Publication type:
- Article
Universal partitioning of the hierarchical fold network of 50-residue segments in proteins.
- Published in:
- BMC Structural Biology, 2009, v. 9, p. 1, doi. 10.1186/1472-6807-9-34
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- Publication type:
- Article
Protein-segment universe exhibiting transitions at intermediate segment length in conformational subspaces.
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- BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-37
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- Publication type:
- Article
Simple adjustment of the sequence weight algorithm remarkably enhances PSI-BLAST performance.
- Published in:
- 2017
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- Publication type:
- Product Review
HMGB1 signaling phosphorylates Ku70 and impairs DNA damage repair in Alzheimer's disease pathology.
- Published in:
- Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02671-4
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- Publication type:
- Article
PoSSuM v.2.0: data update and a new function for investigating ligand analogs and target proteins of small-molecule drugs.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. D1, p. D392, doi. 10.1093/nar/gku1144
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- Publication type:
- Article
EzCatDB: the enzyme reaction database, 2015 update.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. D1, p. D453, doi. 10.1093/nar/gku946
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- Publication type:
- Article
Mammalian NUMT insertion is non-random.
- Published in:
- Nucleic Acids Research, 2012, v. 40, n. 18, p. 9073, doi. 10.1093/nar/gks424
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- Publication type:
- Article
PoSSuM: a database of similar protein–ligand binding and putative pockets.
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- Nucleic Acids Research, 2012, p. D541
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- Publication type:
- Article
SAHG, a comprehensive database of predicted structures of all human proteins.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D487, doi. 10.1093/nar/gkq1057
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- Publication type:
- Article
Identification of hepta-histidine as a candidate drug for Huntington's disease by in silico-in vitro- in vivo-integrated screens of chemical libraries.
- Published in:
- Scientific Reports, 2016, p. 33861, doi. 10.1038/srep33861
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- Publication type:
- Article
PDB-scale analysis of known and putative ligand-binding sites with structural sketches.
- Published in:
- Proteins, 2012, v. 80, n. 3, p. 747, doi. 10.1002/prot.23232
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- Publication type:
- Article
Protein structure prediction using a variety of profile libraries and 3D verification.
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- Proteins, 2005, v. 61, n. S7, p. 114, doi. 10.1002/prot.20727
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- Publication type:
- Article
Functional conservation of the apoptotic machinery from coral to man: the diverse and complex Bcl-2 and caspase repertoires of Acropora millepora.
- Published in:
- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-015-2355-x
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- Publication type:
- Article
ScreenCap3: Improving prediction of caspase-3 cleavage sites using experimentally verified noncleavage sites.
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- Proteomics, 2014, v. 14, n. 17/18, p. 2042, doi. 10.1002/pmic.201400002
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- Publication type:
- Article
Fine-tuning of protein domain boundary by minimizing potential coiled coil regions.
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- Journal of Biomolecular NMR, 2007, v. 37, n. 1, p. 53, doi. 10.1007/s10858-006-9103-0
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- Publication type:
- Article
Comprehensive analysis of PPARγ agonist activities of stereo-, regio-, and enantio-isomers of hydroxyoctadecadienoic acids.
- Published in:
- Bioscience Reports, 2020, v. 40, n. 4, p. 1, doi. 10.1042/BSR20193767
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- Publication type:
- Article
CENP-T provides a structural platform for outer kinetochore assembly.
- Published in:
- EMBO Journal, 2013, v. 32, n. 3, p. 424, doi. 10.1038/emboj.2012.348
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- Publication type:
- Article
Novel lineage‐specific transmembrane β‐barrel proteins in the endoplasmic reticulum of Entamoeba histolytica.
- Published in:
- FEBS Journal, 2019, v. 286, n. 17, p. 3416, doi. 10.1111/febs.14870
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- Publication type:
- Article
AIG1 affects in vitro and in vivo virulence in clinical isolates of Entamoeba histolytica.
- Published in:
- 2018
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- Publication type:
- Correction Notice
AIG1 affects in vitro and in vivo virulence in clinical isolates of Entamoeba histolytica.
- Published in:
- PLoS Pathogens, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.ppat.1006882
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- Publication type:
- Article
Origin and Evolutionary Alteration of the Mitochondrial Import System in Eukaryotic Lineages.
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- Molecular Biology & Evolution, 2017, v. 34, n. 7, p. 1574, doi. 10.1093/molbev/msx096
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- Publication type:
- Article
The Apoptotic Initiator Caspase-8: Its Functional Ubiquity and Genetic Diversity during Animal Evolution.
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- Molecular Biology & Evolution, 2014, v. 31, n. 12, p. 3282, doi. 10.1093/molbev/msu260
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- Publication type:
- Article
Import of Entamoeba histolytica Mitosomal ATP Sulfurylase Relies on Internal Targeting Sequences.
- Published in:
- Microorganisms, 2020, v. 8, n. 8, p. 1229, doi. 10.3390/microorganisms8081229
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- Publication type:
- Article
Accurate Classification of Biological and non-Biological Interfaces in Protein Crystal Structures using Subtle Covariation Signals.
- Published in:
- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-48913-8
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- Publication type:
- Article
Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins.
- Published in:
- Protein Engineering, 1996, v. 9, n. 1, p. 27, doi. 10.1093/protein/9.1.27
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- Publication type:
- Article
DeepECA: an end-to-end learning framework for protein contact prediction from a multiple sequence alignment.
- Published in:
- BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-019-3190-x
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- Publication type:
- Article
Protein ligand binding site prediction using graph transformer neural network.
- Published in:
- PLoS ONE, 2024, v. 19, n. 8, p. 1, doi. 10.1371/journal.pone.0308425
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- Publication type:
- Article
Crystal structure of Tam41 cytidine diphosphate diacylglycerol synthase from a Firmicutes bacterium.
- Published in:
- Journal of Biochemistry, 2022, v. 171, n. 4, p. 429, doi. 10.1093/jb/mvab154
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- Publication type:
- Article
遠縁タンパク質検索に適した新規アミノ酸置換行列.
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- Seibutsu Butsuri, 2015, v. 55, n. 3, p. 133, doi. 10.2142/biophys.55.133
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- Publication type:
- Article
クロスプロファイル解析において同定されたタンパク質セグメントの収斂進化
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- Seibutsu Butsuri, 2013, v. 53, n. 2, p. 101, doi. 10.2142/biophys.53.101
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- Publication type:
- Article
A Novel Antiviral Target Structure Involved in the RNA Binding, Dimerization, and Nuclear Export Functions of the Influenza A Virus Nucleoprotein.
- Published in:
- PLoS Pathogens, 2015, v. 11, n. 7, p. 1, doi. 10.1371/journal.ppat.1005062
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- Publication type:
- Article
Discrimination of Golgi Type II Membrane Proteins Based on Their Hydropathy Profiles and the Amino Acid Propensities of Their Transmembrane Regions.
- Published in:
- Bioscience, Biotechnology & Biochemistry, 2011, v. 75, n. 1, p. 82, doi. 10.1271/bbb.100571
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- Publication type:
- Article
Designing better diffracting crystals of biotin carboxyl carrier protein from Pyrococcus horikoshii by a mutation based on the crystal-packing propensity of amino acids.
- Published in:
- Acta Crystallographica: Section D, Structural Biology, 2017, v. 73, n. 9, p. 757, doi. 10.1107/S2059798317010932
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- Publication type:
- Article
Crim1<sup>C140S</sup> mutant mice reveal the importance of cysteine 140 in the internal region 1 of CRIM1 for its physiological functions.
- Published in:
- Mammalian Genome, 2019, v. 30, n. 11/12, p. 329, doi. 10.1007/s00335-019-09822-3
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- Publication type:
- Article
FORTE: a profileprofile comparison tool for protein fold recognition.
- Published in:
- Bioinformatics, 2004, v. 20, n. 4, p. 594, doi. 10.1093/bioinformatics/btg474
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- Publication type:
- Article
A Novel Mitosomal β-Barrel Outer Membrane Protein in Entamoeba.
- Published in:
- Scientific Reports, 2015, p. 8545, doi. 10.1038/srep08545
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- Publication type:
- Article
Tyrosine phosphorylation of the GARU E3 ubiquitin ligase promotes gibberellin signalling by preventing GID1 degradation.
- Published in:
- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01005-5
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- Publication type:
- Article
Conserved Dynamic Mechanism of Allosteric Response to L-arg in Divergent Bacterial Arginine Repressors.
- Published in:
- Molecules, 2020, v. 25, n. 9, p. 2247, doi. 10.3390/molecules25092247
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- Publication type:
- Article
Activity and Affinity of Pin1 Variants.
- Published in:
- Molecules, 2020, v. 25, n. 1, p. 36, doi. 10.3390/molecules25010036
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- Publication type:
- Article
Crystal Structure of Human EOLA1 Implies Its Possibility of RNA Binding.
- Published in:
- Molecules, 2019, v. 24, n. 19, p. 3529, doi. 10.3390/molecules24193529
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- Publication type:
- Article
Cyclization of Single-Chain Fv Antibodies Markedly Suppressed Their Characteristic Aggregation Mediated by Inter-Chain VH-VL Interactions.
- Published in:
- Molecules, 2019, v. 24, n. 14, p. 2620, doi. 10.3390/molecules24142620
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- Publication type:
- Article
Neuronal and non-neuronal functions of the synaptic cell adhesion molecule neurexin in Nematostella vectensis.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-50818-8
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- Publication type:
- Article
Evolutionary analyses of caspase-8 and its paralogs: Deep origins of the apoptotic signaling pathways.
- Published in:
- BioEssays, 2015, v. 37, n. 7, p. 767, doi. 10.1002/bies.201500010
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- Publication type:
- Article
Genome-Wide Analysis of Known and Potential Tetraspanins in Entamoeba histolytica.
- Published in:
- Genes, 2019, v. 10, n. 11, p. 885, doi. 10.3390/genes10110885
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- Publication type:
- Article
Visualization of conformational distribution of short to medium size segments in globular proteins and identification of local structural motifs.
- Published in:
- Protein Science: A Publication of the Protein Society, 2005, v. 14, n. 5, p. 1253, doi. 10.1110/ps.04956305
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- Publication type:
- Article
Template‐based quaternary structure prediction of proteins using enhanced profile–profile alignments.
- Published in:
- Proteins, 2018, v. 86, n. 1, p. 274, doi. 10.1002/prot.25432
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- Publication type:
- Article
Compound–protein interaction prediction with end-to-end learning of neural networks for graphs and sequences.
- Published in:
- Bioinformatics, 2019, v. 35, n. 2, p. 309, doi. 10.1093/bioinformatics/bty535
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- Publication type:
- Article
Parallelization of MAFFT for large-scale multiple sequence alignments.
- Published in:
- Bioinformatics, 2018, v. 34, n. 14, p. 2490, doi. 10.1093/bioinformatics/bty121
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- Publication type:
- Article