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Improved detection and consistency of RNA-interacting proteomes using DIA SILAC.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. 4, p. e21, doi. 10.1093/nar/gkad1249
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- Article
The conserved RNA-binding protein Seb1 promotes cotranscriptional ribosomal RNA processing by controlling RNA polymerase I progression.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38826-6
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- Article
A disease-linked lncRNA mutation in RNase MRP inhibits ribosome synthesis.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28295-8
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- Article
The SPARC complex defines RNAPII promoters in Trypanosoma brucei.
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- eLife, 2022, p. 1, doi. 10.7554/eLife.83135
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- Article
The RNA-Binding Landscape of HAX1 Protein Indicates Its Involvement in Translation and Ribosome Assembly.
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- Cells (2073-4409), 2022, v. 11, n. 19, p. 2943, doi. 10.3390/cells11192943
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- Article
Yeast Ssd1 is a non-enzymatic member of the RNase II family with an alternative RNA recognition site.
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- Nucleic Acids Research, 2022, v. 50, n. 5, p. 2923, doi. 10.1093/nar/gkab615
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- Article
A disease-linked lncRNA mutation in RNase MRP inhibits ribosome synthesis.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28295-8
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- Article
The expression of Rpb10, a small subunit common to RNA polymerases, is modulated by the R3H domain-containing Rbs1 protein and the Upf1 helicase.
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- Nucleic Acids Research, 2020, v. 48, n. 21, p. 12252, doi. 10.1093/nar/gkaa1069
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- Article
Substrate specificity of the TRAMP nuclear surveillance complexes.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16965-4
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- Article
Synergistic defects in pre-rRNA processing from mutations in the U3-specific protein Rrp9 and U3 snoRNA.
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- Nucleic Acids Research, 2020, v. 48, n. 7, p. 3848, doi. 10.1093/nar/gkaa066
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- Article
Defining the RNA interactome by total RNA‐associated protein purification.
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- Molecular Systems Biology, 2019, v. 15, n. 4, p. N.PAG, doi. 10.15252/msb.20188689
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- Article
Molecular interactions between Hel2 and RNA supporting ribosome-associated quality control.
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- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08382-z
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- Article
An RNA-dependent mechanism for transient expression of bacterial translocation filaments.
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- Nucleic Acids Research, 2018, v. 46, n. 7, p. 3366, doi. 10.1093/nar/gky096
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- Article
RNA polymerase II stalling at pre-mRNA splice sites is enforced by ubiquitination of the catalytic subunit.
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- eLife, 2017, p. 1, doi. 10.7554/eLife.27082
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- Article
Transcriptome-wide analysis of alternative routes for RNA substrates into the exosome complex.
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- PLoS Genetics, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pgen.1006699
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- Article
Small RNA interactome of pathogenic E. coli revealed through crosslinking of RNase E.
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- EMBO Journal, 2017, v. 36, n. 3, p. 374, doi. 10.15252/embj.201694639
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- Article
VapCs of Mycobacterium tuberculosis cleave RNAs essential for translation.
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- Nucleic Acids Research, 2016, v. 44, n. 20, p. 9860, doi. 10.1093/nar/gkw781
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- Article
Transcription by RNA polymerase III: insights into mechanism and regulation.
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- Biochemical Society Transactions, 2016, v. 44, n. 5, p. 1367, doi. 10.1042/BST20160062
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- Article
The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5399, doi. 10.1093/nar/gkw213
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- Article
Strand-specific, high-resolution mapping of modified RNA polymerase II.
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- Molecular Systems Biology, 2016, v. 12, n. 6, p. n/a, doi. 10.15252/msb.20166869
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- Article
Pre-40S ribosome biogenesis factor Tsr1 is an inactive structural mimic of translational GTPases.
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- Nature Communications, 2016, v. 7, n. 6, p. 11789, doi. 10.1038/ncomms11789
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- Article
UtpA and UtpB chaperone nascent pre-ribosomal RNA and U3 snoRNA to initiate eukaryotic ribosome assembly.
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- Nature Communications, 2016, v. 7, n. 6, p. 12090, doi. 10.1038/ncomms12090
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- Article
Loss of the Yeast SR Protein Npl3 Alters Gene Expression Due to Transcription Readthrough.
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- PLoS Genetics, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pgen.1005735
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- Article
The DEAH-box Helicase Dhr1 Dissociates U3 from the Pre-rRNA to Promote Formation of the Central Pseudoknot.
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- PLoS Biology, 2015, v. 13, n. 2, p. 1, doi. 10.1371/journal.pbio.1002083
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- Article
Cotranscriptional events in eukaryotic ribosome synthesis.
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- Wiley Interdisciplinary Reviews: RNA, 2015, v. 6, n. 1, p. 129, doi. 10.1002/wrna.1263
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- Article
Rio1 mediates ATP-dependent final maturation of 40S ribosomal subunits.
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- Nucleic Acids Research, 2014, v. 42, n. 19, p. 12189, doi. 10.1093/nar/gku878
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- Article
Genome-Wide Distribution of RNA-DNA Hybrids Identifies RNase H Targets in tRNA Genes, Retrotransposons and Mitochondria.
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- PLoS Genetics, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pgen.1004716
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- Article
Integrity of SRP RNA is ensured by La and the nuclear RNA quality control machinery.
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- Nucleic Acids Research, 2014, v. 42, n. 16, p. 10698, doi. 10.1093/nar/gku761
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- Article
RNA Mimicry by the Fap7 Adenylate Kinase in Ribosome Biogenesis.
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- PLoS Biology, 2014, v. 12, n. 5, p. 1, doi. 10.1371/journal.pbio.1001860
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- Article
Mapping the miRNA interactome by cross-linking ligation and sequencing of hybrids (CLASH)
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- Nature Protocols, 2014, v. 9, n. 3, p. 711, doi. 10.1038/nprot.2014.043
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- Article
Final Pre-40S Maturation Depends on the Functional Integrity of the 60S Subunit Ribosomal Protein L3.
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- PLoS Genetics, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pgen.1004205
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- Article
Kinetic Analysis Demonstrates a Requirement for the Rat1 Exonuclease in Cotranscriptional Pre-rRNA Cleavage.
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- PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0085703
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- Article
Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export.
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- Nature, 2014, v. 505, n. 7481, p. 112, doi. 10.1038/nature12731
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Looking into the barrel of the RNA exosome.
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- Nature Structural & Molecular Biology, 2014, v. 21, n. 1, p. 17, doi. 10.1038/nsmb.2750
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- Article
Multiple RNA interactions position Mrd1 at the site of the small subunit pseudoknot within the 90S pre-ribosome.
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- Nucleic Acids Research, 2013, v. 41, n. 2, p. 1178, doi. 10.1093/nar/gks1129
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- Article
Structure of the pre-60S ribosomal subunit with nuclear export factor Arx1 bound at the exit tunnel.
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- Nature Structural & Molecular Biology, 2012, v. 19, n. 12, p. 1234, doi. 10.1038/nsmb.2438
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- Article
Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits.
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- Nature Structural & Molecular Biology, 2012, v. 19, n. 8, p. 744, doi. 10.1038/nsmb.2308
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- Article
Repeat expansion in the budding yeast ribosomal DNA can occur independently of the canonical homologous recombination machinery.
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- Nucleic Acids Research, 2011, v. 39, n. 20, p. 8778, doi. 10.1093/nar/gkr589
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- Article
A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease.
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- EMBO Journal, 2011, v. 30, n. 19, p. 4006, doi. 10.1038/emboj.2011.256
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- Article
The nuclear RNA polymerase II surveillance system targets polymerase III transcripts.
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- EMBO Journal, 2011, v. 30, n. 14, p. 2982, doi. 10.1038/emboj.2011.209
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- Article
Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing.
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- EMBO Journal, 2011, v. 30, n. 12, p. 2420, doi. 10.1038/emboj.2011.148
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- Article
The nuclear RNA polymerase II surveillance system targets polymerase III transcripts.
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- EMBO Journal, 2011, v. 30, n. 9, p. 1790, doi. 10.1038/emboj.2011.97
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- Article
Apparent Non-Canonical Trans-Splicing Is Generated by Reverse Transcriptase In Vitro.
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- PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0012271
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Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA–protein cross-linking.
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- EMBO Journal, 2010, v. 29, n. 12, p. 2026, doi. 10.1038/emboj.2010.86
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- Article
The N-terminal PIN domain of the exosome subunit Rrp44 harbors endonuclease activity and tethers Rrp44 to the yeast core exosome.
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- Nucleic Acids Research, 2009, v. 37, n. 4, p. 1127, doi. 10.1093/nar/gkn1020
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- Article
An Endoribonuclease Functionally Linked to Perinuclear mRNP Quality Control Associates with the Nuclear Pore Complexes.
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- PLoS Biology, 2009, v. 7, n. 1, p. e1000008, doi. 10.1371/journal.pbio.1000008
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- Article
Quantitative analysis of snoRNA association with pre-ribosomes and release of snR30 by Rok1 helicase.
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- EMBO Reports, 2008, v. 9, n. 12, p. 1230, doi. 10.1038/embor.2008.184
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- Article
The mRNA encoding the yeast ARE-binding protein Cth2 is generated by a novel 3′ processing pathway.
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- Nucleic Acids Research, 2008, v. 36, n. 9, p. 3075, doi. 10.1093/nar/gkn160
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- Article
The yeast ribosome synthesis factor Emg1 is a novel member of the superfamily of alpha/beta knot fold methyltransferases.
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- Nucleic Acids Research, 2008, v. 36, n. 2, p. 629
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- Article
Trf4 targets ncRNAs from telomeric and rDNA spacer regions and functions in rDNA copy number control.
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- EMBO Journal, 2007, v. 26, n. 24, p. 4996, doi. 10.1038/sj.emboj.7601921
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- Article