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Ranking environmental and edaphic attributes driving soil microbial community structure and activity with special attention to spatial and temporal scales.
- Published in:
- mLife, 2024, v. 3, n. 1, p. 21, doi. 10.1002/mlf2.12116
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- Article
Bacterial community assembly and antibiotic resistance genes in soils exposed to antibiotics at environmentally relevant concentrations.
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- Environmental Microbiology, 2023, v. 25, n. 8, p. 1439, doi. 10.1111/1462-2920.16371
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- Article
Mycobiome structure does not affect field litter decomposition in Eucalyptus and Acacia plantations.
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- Frontiers in Microbiology, 2023, v. 14, p. 1, doi. 10.3389/fmicb.2023.1106422
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- Article
土壤中抗生素抗性基因的环境行为与阻控研究进展.
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- Acta Pedologica Sinica / T'u Jang Hsueh Pao, 2023, v. 60, n. 1, p. 39, doi. 10.11766/trxb202111100608
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- Article
土壤中有机肥源抗生素抗性基因环境归趋 与风险管理研究进展.
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- Journal of Agro-Environment Science, 2022, v. 41, n. 12, p. 2563, doi. 10.11654/jaes.2022-1245
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- Article
不同土地利用方式下典型黑土区土壤微生物群落演替规律.
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- Acta Pedologica Sinica / T'u Jang Hsueh Pao, 2022, v. 59, n. 5, p. 1238, doi. 10.11766/trxb202103040128
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- Article
Permafrost thaw with warming reduces microbial metabolic capacities in subsurface soils.
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- Molecular Ecology, 2022, v. 31, n. 5, p. 1403, doi. 10.1111/mec.16319
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- Article
An omics-based framework for assessing the health risk of antimicrobial resistance genes.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25096-3
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- Article
Metagenomic analysis reveals the shared and distinct features of the soil resistome across tundra, temperate prairie, and tropical ecosystems.
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- Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01047-4
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- Article
A new primer set for Clade I nosZ that recovers genes from a broader range of taxa.
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- Biology & Fertility of Soils, 2021, v. 57, n. 4, p. 523, doi. 10.1007/s00374-021-01544-6
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- Article
Peat-based gnotobiotic plant growth systems for Arabidopsis microbiome research.
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- Nature Protocols, 2021, v. 16, n. 5, p. 2450, doi. 10.1038/s41596-021-00504-6
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- Article
Climate warming enhances microbial network complexity and stability.
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- Nature Climate Change, 2021, v. 11, n. 4, p. 343, doi. 10.1038/s41558-021-00989-9
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- Article
Winter warming rapidly increases carbon degradation capacities of fungal communities in tundra soil: Potential consequences on carbon stability.
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- Molecular Ecology, 2021, v. 30, n. 4, p. 926, doi. 10.1111/mec.15773
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- Article
The soil microbial carbon pump: From conceptual insights to empirical assessments.
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- Global Change Biology, 2020, v. 26, n. 11, p. 6032, doi. 10.1111/gcb.15319
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- Article
Review, Evaluation, and Directions for Gene-Targeted Assembly for Ecological Analyses of Metagenomes.
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- Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.00957
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- Article
Bacillus-Dominant Airborne Bacterial Communities Identified During Asian Dust Events.
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- Microbial Ecology, 2019, v. 78, n. 3, p. 677, doi. 10.1007/s00248-019-01348-0
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- Article
Effect of LSU and ITS genetic markers and reference databases on analyses of fungal communities.
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- Biology & Fertility of Soils, 2019, v. 55, n. 1, p. 79, doi. 10.1007/s00374-018-1331-4
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- Article
Biotic responses buffer warming‐induced soil organic carbon loss in Arctic tundra.
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- Global Change Biology, 2018, v. 24, n. 10, p. 4946, doi. 10.1111/gcb.14325
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- Article
Climate warming leads to divergent succession of grassland microbial communities.
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- Nature Climate Change, 2018, v. 8, n. 9, p. 813, doi. 10.1038/s41558-018-0254-2
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- Article
Microbial Community Structure and Functional Potential in Cultivated and Native Tallgrass Prairie Soils of the Midwestern United States.
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- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01775
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- Article
More replenishment than priming loss of soil organic carbon with additional carbon input.
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- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-05667-7
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- Article
New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes.
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- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01635
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- Article
Conserved phylogenetic distribution and limited antibiotic resistance of class 1 integrons revealed by assessing the bacterial genome and plasmid collection.
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- Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0516-2
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- Article
The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level.
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- Nucleic Acids Research, 2018, v. 46, n. W1, p. W282, doi. 10.1093/nar/gky467
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- Article
ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes.
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- Bioinformatics, 2018, v. 34, n. 13, p. 2263, doi. 10.1093/bioinformatics/bty053
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- Article
Associative nitrogen fixation (ANF) in switchgrass (Panicum virgatum) across a nitrogen input gradient.
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- PLoS ONE, 2018, v. 13, n. 5, p. 1, doi. 10.1371/journal.pone.0197320
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- Article
Taxonomic and Functional Responses of Soil Microbial Communities to Annual Removal of Aboveground Plant Biomass.
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- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00954
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- Article
Microbial functional diversity covaries with permafrost thaw-induced environmental heterogeneity in tundra soil.
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- Global Change Biology, 2018, v. 24, n. 1, p. 297, doi. 10.1111/gcb.13820
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- Article
The Microbiome of Eucalyptus Roots under Different Management Conditions and Its Potential for Biological Nitrogen Fixation.
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- Microbial Ecology, 2018, v. 75, n. 1, p. 183, doi. 10.1007/s00248-017-1014-y
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- Article
Correction to: The Microbiome of Eucalyptus Roots under Different Management Conditions and Its Potential for Biological Nitrogen Fixation.
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- 2018
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- Erratum
Evaluation of Nucleic Acid Isothermal Amplification Methods for Human Clinical Microbial Infection Detection.
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- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.02211
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- Article
Hypoxia and inactivity related physiological changes precede or take place in absence of significant rearrangements in bacterial community structure: The PlanHab randomized trial pilot study.
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- PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0188556
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- Article
MicroRNAs-Based Inter-Domain Communication between the Host and Members of the Gut Microbiome.
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- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01896
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- Article
Modulatory Influence of Segmented Filamentous Bacteria on Transcriptomic Response of Gnotobiotic Mice Exposed to TCDD.
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- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01708
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- Article
Quantification of microRNAs directly from body fluids using a base-stacking isothermal amplification method in a point-of-care device.
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- Biomedical Microdevices, 2017, v. 19, n. 3, p. 1, doi. 10.1007/s10544-017-0191-2
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- Article
Modeling Hybridization Kinetics of Gene Probes in a DNA Biochip Using FEMLAB.
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- Microarrays (2076-3905), 2017, v. 6, n. 2, p. 9, doi. 10.3390/microarrays6020009
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- Article
Hypoxia and Inactivity Related Physiological Changes (Constipation, In?ammation) Are Not Re?ected at the Level of Gut Metabolites and Butyrate Producing Microbial Community: The PlanHab Study.
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- Frontiers in Physiology, 2017, v. 8, p. 1, doi. 10.3389/fphys.2017.00250
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- Article
Conversion of Amazon rainforest to agriculture alters community traits of methane-cycling organisms.
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- Molecular Ecology, 2017, v. 26, n. 6, p. 1547, doi. 10.1111/mec.14011
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- Article
The Resistome of Farmed Fish Feces Contributes to the Enrichment of Antibiotic Resistance Genes in Sediments below Baltic Sea Fish Farms.
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- Frontiers in Microbiology, 2017, v. 7, p. 1, doi. 10.3389/fmicb.2016.02137
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- Article
Land use intensification in the humid tropics increased both alpha and beta diversity of soil bacteria.
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- Ecology, 2016, v. 97, n. 10, p. 2760, doi. 10.1002/ecy.1513
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- Article
ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database.
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- Bioinformatics, 2016, v. 32, n. 15, p. 2346, doi. 10.1093/bioinformatics/btw136
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- Article
Soil fungal and bacterial responses to conversion of open land to short-rotation woody biomass crops.
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- GCB Bioenergy, 2016, v. 8, n. 4, p. 723, doi. 10.1111/gcbb.12303
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- Article
Sphingomonas wittichii Strain RW1 Genome-Wide Gene Expression Shifts in Response to Dioxins and Clay.
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- PLoS ONE, 2016, v. 11, n. 6, p. 1, doi. 10.1371/journal.pone.0157008
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- Article
Size Matters: Assessing Optimum Soil Sample Size for Fungal and Bacterial Community Structure Analyses Using High Throughput Sequencing of rRNA Gene Amplicons.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00824
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- Article
Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming.
- Published in:
- Nature Climate Change, 2016, v. 6, n. 6, p. 595, doi. 10.1038/nclimate2940
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- Article
Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00579
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- Article
Influence of corn, switchgrass, and prairie cropping systems on soil microbial communities in the upper Midwest of the United States.
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- GCB Bioenergy, 2016, v. 8, n. 2, p. 481, doi. 10.1111/gcbb.12289
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- Article
Differential Response of Acidobacteria Subgroups to Forest-to-Pasture Conversion and Their Biogeographic Patterns in the Western Brazilian Amazon.
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- Frontiers in Microbiology, 2015, v. 6, p. 1, doi. 10.3389/fmicb.2015.01443
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- Article
Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 11, p. 2490, doi. 10.1038/ismej.2015.59
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- Article
Static self-directed sample dispensing into a series of reaction wells on a microfluidic card for parallel genetic detection of microbial pathogens.
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- Biomedical Microdevices, 2015, v. 17, n. 5, p. 1, doi. 10.1007/s10544-015-9994-1
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- Article