Works by Tian, Zhongyuan

Results: 21

Landscape of the Epstein-Barr virus-host chromatin interactome and gene regulation.

Published in:

EMBO Journal, 2025, v. 44, n. 13, p. 3872, doi. 10.1038/s44318-025-00466-5

By:

Tian, Simon Zhongyuan;
Yang, Yang;
Ning, Duo;
Yu, Ting;
Gao, Tong;
Deng, Yuqing;
Fang, Ke;
Xu, Yewen;
Jing, Kai;
Huang, Guangyu;
Chen, Gengzhan;
Yin, Pengfei;
Li, Yiming;
Zeng, Fuxing;
Tian, Ruilin;
Zheng, Meizhen

Publication type:

Article

Chromatin structure and gene transcription of recombinant p53 adenovirus vector within host.

Published in:

Frontiers in Molecular Biosciences, 2025, p. 1, doi. 10.3389/fmolb.2025.1562357

By:

Ning, Duo;
Deng, Yuqing;
Tian, Simon Zhongyuan

Publication type:

Article

Specific multivalent molecules boost CRISPR-mediated transcriptional activation.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-51694-y

By:

Chen, Rui;
Shi, Xinyao;
Yao, Xiangrui;
Gao, Tong;
Huang, Guangyu;
Ning, Duo;
Cao, Zemin;
Xu, Youxin;
Liang, Weizheng;
Tian, Simon Zhongyuan;
Zhu, Qionghua;
Fang, Liang;
Zheng, Meizhen;
Hu, Yuhui;
Cui, Huanhuan;
Chen, Wei

Publication type:

Article

Chromatin topology reorganization and transcription repression by PML-RARα in acute promyeloid leukemia.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02030-2

By:

Wang, Ping;
Tang, Zhonghui;
Lee, Byoungkoo;
Zhu, Jacqueline Jufen;
Cai, Liuyang;
Szalaj, Przemyslaw;
Tian, Simon Zhongyuan;
Zheng, Meizhen;
Plewczynski, Dariusz;
Ruan, Xiaoan;
Liu, Edison T.;
Wei, Chia-Lin;
Ruan, Yijun

Publication type:

Article

MIA-Sig: multiplex chromatin interaction analysis by signal processing and statistical algorithms.

Published in:

Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1868-z

By:

Kim, Minji;
Zheng, Meizhen;
Tian, Simon Zhongyuan;
Lee, Byoungkoo;
Chuang, Jeffrey H.;
Ruan, Yijun

Publication type:

Article

Enterococcus faecium HDRsEf1 Protects the Intestinal Epithelium and Attenuates ETEC-Induced IL-8 Secretion in Enterocytes.

Published in:

Mediators of Inflammation, 2016, p. 1, doi. 10.1155/2016/7474306

By:

Tian, Zhongyuan;
Liu, Xiaofang;
Dai, Ran;
Xiao, Yuncai;
Wang, Xiliang;
Bi, Dingren;
Shi, Deshi

Publication type:

Article

Nuclear pore protein NUP210 depletion suppresses metastasis through heterochromatin-mediated disruption of tumor cell mechanical response.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27451-w

By:

Amin, Ruhul;
Shukla, Anjali;
Zhu, Jacqueline Jufen;
Kim, Sohyoung;
Wang, Ping;
Tian, Simon Zhongyuan;
Tran, Andy D.;
Paul, Debasish;
Cappell, Steven D.;
Burkett, Sandra;
Liu, Huaitian;
Lee, Maxwell P.;
Kruhlak, Michael J.;
Dwyer, Jennifer E.;
Simpson, R. Mark;
Hager, Gordon L.;
Ruan, Yijun;
Hunter, Kent W.

Publication type:

Article

TF-chRDP: a method for simultaneously capturing transcription factor binding chromatin-associated RNA, DNA and protein.

Published in:

Frontiers in Cell & Developmental Biology, 2025, p. 1, doi. 10.3389/fcell.2025.1561540

By:

Ning, Duo;
Deng, Yuqing;
Gao, Tong;
Yang, Yang;
Chen, Gengzhan;
Tian, Simon Zhongyuan;
Zheng, Meizhen

Publication type:

Article

ScSmOP: a universal computational pipeline for single-cell single-molecule multiomics data analysis.

Published in:

Briefings in Bioinformatics, 2023, v. 24, n. 6, p. 1, doi. 10.1093/bib/bbad343

By:

Jing, Kai;
Xu, Yewen;
Yang, Yang;
Yin, Pengfei;
Ning, Duo;
Huang, Guangyu;
Deng, Yuqing;
Chen, Gengzhan;
Li, Guoliang;
Tian, Simon Zhongyuan;
Zheng, Meizhen

Publication type:

Article

MCIBox: a toolkit for single-molecule multi-way chromatin interaction visualization and micro-domains identification.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 6, p. 1, doi. 10.1093/bib/bbac380

By:

Tian, Simon Zhongyuan;
Li, Guoliang;
Ning, Duo;
Jing, Kai;
Xu, Yewen;
Yang, Yang;
Fullwood, Melissa J;
Yin, Pengfei;
Huang, Guangyu;
Plewczynski, Dariusz;
Zhai, Jixian;
Dai, Ziwei;
Chen, Wei;
Zheng, Meizhen

Publication type:

Article

The inflammation regulation effects of Enterococcus faecium HDRsEf1 on human enterocyte-like HT-29 cells.

Published in:

Animal Cells & Systems, 2016, v. 20, n. 2, p. 70, doi. 10.1080/19768354.2016.1160955

By:

Tian, Zhongyuan;
Yang, Lu;
Li, Penghui;
Xiao, Yuncai;
Peng, Jian;
Wang, Xiliang;
Li, Zili;
Liu, Mei;
Bi, Dingren;
Shi, Deshi

Publication type:

Article

Identification of key regulators in glycogen utilization in E. coli based on the simulations from a hybrid functional Petri net model.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S1

By:

Zhongyuan Tian;
Fauré, Adrien;
Mori, Hirotada;
Hiroshi Matsuno

Publication type:

Article

Breed Differences in Pig Liver Esterase (PLE) between Tongcheng (Chinese Local Breed) and Large White Pigs.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-34695-y

By:

Xiao, Qiling;
Zhou, Qiongqiong;
Yang, Lu;
Tian, Zhongyuan;
Wang, Xiliang;
Xiao, Yuncai;
Shi, Deshi

Publication type:

Article

Self‐Powered and Self‐Healable Extraocular‐Muscle‐Like Actuator Based on Dielectric Elastomer Actuator and Triboelectric Nanogenerator.

Published in:

Advanced Materials, 2024, v. 36, n. 7, p. 1, doi. 10.1002/adma.202309893

By:

Liu, Yanze;
Yue, Shangzhi;
Tian, Zhongyuan;
Zhu, Zijuan;
Li, Yongji;
Chen, Xiangyu;
Wang, Zhong Lin;
Yu, Zhong‐Zhen;
Yang, Dan

Publication type:

Article

Pore‐C simultaneously captures genome‐wide multi‐way chromatin interaction and associated DNA methylation status in Arabidopsis.

Published in:

Plant Biotechnology Journal, 2022, v. 20, n. 6, p. 1009, doi. 10.1111/pbi.13811

By:

Li, Zhuowen;
Long, Yanping;
Yu, Yiming;
Zhang, Fei;
Zhang, Hong;
Liu, Zhijian;
Jia, Jinbu;
Mo, Weipeng;
Tian, Simon Zhongyuan;
Zheng, Meizhen;
Zhai, Jixian

Publication type:

Article

Long-read ChIA-PET for base-pair-resolution mapping of haplotype-specific chromatin interactions.

Published in:

Nature Protocols, 2017, v. 12, n. 5, p. 899, doi. 10.1038/nprot.2017.012

By:

Li, Xingwang;
Luo, Oscar Junhong;
Wang, Ping;
Zheng, Meizhen;
Wang, Danjuan;
Piecuch, Emaly;
Zhu, Jacqueline Jufen;
Tian, Simon Zhongyuan;
Tang, Zhonghui;
Li, Guoliang;
Ruan, Yijun

Publication type:

Article

Resistivity correction for drilling fluid invasion using LWD and wire-line logging data: A case from high-porosity and low-permeability carbonate reservoirs, DLL Oilfield, Oman

Published in:

Petroleum Exploration & Development, 2010, v. 37, n. 4, p. 430, doi. 10.1016/S1876-3804(10)60044-4

By:

Zhongyuan, Tian;
Aming, Jiang;
Weilin, Yan;
Yingming, Liu;
Shuangsheng, Guo

Publication type:

Article

Prediction of reservoir depletion degree and production GOR using logging-while-drilling data

Published in:

Petroleum Exploration & Development, 2009, v. 36, n. 5, p. 617, doi. 10.1016/S1876-3804(09)60149-X

By:

Fangming, Li;
Zhongyuan, Tian;
Aming, Jiang;
Xiaoxia, Wang

Publication type:

Article

Tn5-Labeled DNA-FISH: An Optimized Probe Preparation Method for Probing Genome Architecture.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 5, p. 2224, doi. 10.3390/ijms26052224

By:

Yang, Yang;
Chen, Gengzhan;
Gao, Tong;
Ning, Duo;
Deng, Yuqing;
Tian, Zhongyuan;
Zheng, Meizhen

Publication type:

Article

Human Nervous System Inspired Modified Graphene Nanoplatelets/Cellulose Nanofibers‐Based Wearable Sensors with Superior Thermal Management and Electromagnetic Interference Shielding.

Published in:

Advanced Functional Materials, 2024, v. 34, n. 28, p. 1, doi. 10.1002/adfm.202315851

By:

Zhu, Zijuan;
Tian, Zhongyuan;
Liu, Yanze;
Yue, Shangzhi;
Li, Yongji;
Wang, Zhong Lin;
Yu, Zhong‐Zhen;
Yang, Dan

Publication type:

Article

All‐Weather Self‐Powered Intelligent Traffic Monitoring System Based on a Conjunction of Self‐Healable Piezoresistive Sensors and Triboelectric Nanogenerators.

Published in:

Advanced Functional Materials, 2023, v. 33, n. 52, p. 1, doi. 10.1002/adfm.202308845

By:

Li, Yongji;
Tian, Zhongyuan;
Gao, Xuan‐Zhi;
Zhao, Hao‐Yu;
Li, Xiaofeng;
Wang, Zhong Lin;
Yu, Zhong‐Zhen;
Yang, Dan

Publication type:

Article