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Comparative Analysis of Two Helicobacter pylori Strains using Genomics and Mass Spectrometry-Based Proteomics.
Published in:
Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.01757
By:
- Karlsson, Roger;
- Thorell, Kaisa;
- Hosseini, Shaghayegh;
- Kenny, Diarmuid;
- Sihlbom, Carina;
- Sjoling, Åsa;
- Karlsson, Anders;
- Nookaew, Intawat
Publication type:
Article
Atlantic Salmon Mucins Inhibit LuxS -Dependent A. Salmonicida AI-2 Quorum Sensing in an N -Acetylneuraminic Acid-Dependent Manner.
Published in:
International Journal of Molecular Sciences, 2022, v. 23, n. 8, p. 4326, doi. 10.3390/ijms23084326
By:
- Padra, János Tamás;
- Loibman, Stefany Ojaimi;
- Thorell, Kaisa;
- Sundh, Henrik;
- Sundell, Kristina;
- Lindén, Sara K.
Publication type:
Article
A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk.
Published in:
BMC Biology, 2018, v. 16, n. 1, p. 1, doi. 10.1186/s12915-018-0550-3
By:
- Berthenet, Elvire;
- Koji Yahara;
- Thorell, Kaisa;
- Pascoe, Ben;
- Meric, Guillaume;
- Mikhail, Jane M.;
- Engstrand, Lars;
- Enroth, Helena;
- Burette, Alain;
- Megraud, Francis;
- Varon, Christine;
- Atherton, John C.;
- Smith, Sinead;
- Wilkinson, Thomas S.;
- Hitchings, Matthew D.;
- Falush, Daniel;
- Sheppard, Samuel K.
Publication type:
Article
Global Antimicrobial Resistance Gene Study of Helicobacter pylori : Comparison of Detection Tools, ARG and Efflux Pump Gene Analysis, Worldwide Epidemiological Distribution, and Information Related to the Antimicrobial-Resistant Phenotype.
Published in:
Antibiotics (2079-6382), 2023, v. 12, n. 7, p. 1118, doi. 10.3390/antibiotics12071118
By:
- Alfaray, Ricky Indra;
- Saruuljavkhlan, Batsaikhan;
- Fauzia, Kartika Afrida;
- Torres, Roberto C.;
- Thorell, Kaisa;
- Dewi, Selva Rosyta;
- Kryukov, Kirill A.;
- Matsumoto, Takashi;
- Akada, Junko;
- Vilaichone, Ratha-korn;
- Miftahussurur, Muhammad;
- Yamaoka, Yoshio
Publication type:
Article
The Helicobacter pylori Genome Project: insights into H. pylori population structure from analysis of a worldwide collection of complete genomes.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43562-y
By:
- Thorell, Kaisa;
- Muñoz-Ramírez, Zilia Y.;
- Wang, Difei;
- Sandoval-Motta, Santiago;
- Boscolo Agostini, Rajiv;
- Ghirotto, Silvia;
- Torres, Roberto C.;
- Romero-Gallo, Judith;
- Krishna, Uma;
- Peek Jr, Richard M.;
- Piazuelo, M. Blanca;
- Raaf, Naïma;
- Bentolila, Federico;
- Aftab, Hafeza;
- Akada, Junko;
- Matsumoto, Takashi;
- Haesebrouck, Freddy;
- Colanzi, Rony P.;
- Bartelli, Thais F.;
- Nunes, Diana Noronha
Publication type:
Article
Strategies to improve usability and preserve accuracy in biological sequence databases.
Published in:
Proteomics, 2016, v. 16, n. 18, p. 2454, doi. 10.1002/pmic.201600034
By:
- Bengtsson‐Palme, Johan;
- Boulund, Fredrik;
- Edström, Robert;
- Feizi, Amir;
- Johnning, Anna;
- Jonsson, Viktor A.;
- Karlsson, Fredrik H.;
- Pal, Chandan;
- Pereira, Mariana Buongermino;
- Rehammar, Anna;
- Sanchez, José;
- Sanli, Kemal;
- Thorell, Kaisa
Publication type:
Article
Transcriptome signatures in Helicobacter pyloriinfected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker.
Published in:
BMC Medical Genomics, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1755-8794-6-41
By:
- Nookaew, Intawat;
- Thorell, Kaisa;
- Worah, Kuntal;
- Shugui Wang;
- Hibberd, Martin Lloyd;
- Sjövall, Henrik;
- Pettersson, Sven;
- Nielsen, Jens;
- Lundin, Samuel B.
Publication type:
Article
Whole Genome Sequence and Phylogenetic Analysis Show Helicobacter pylori Strains from Latin America Have Followed a Unique Evolution Pathway.
Published in:
Frontiers in Cellular & Infection Microbiology, 2017, v. 7, p. 1, doi. 10.3389/fcimb.2017.00050
By:
- Muñoz-Ramírez, Zilia Y.;
- Mendez-Tenorio, Alfonso;
- Ikuko Kato;
- Bravo, Maria M.;
- Rizzato, Cosmeri;
- Thorell, Kaisa;
- Torres, Roberto;
- Aviles-Jimenez, Francisco;
- Camorlinga, Margarita;
- Canzian, Federico;
- Torres, Javier
Publication type:
Article
Alterations of c-di- GMP turnover proteins modulate semi-constitutive rdar biofilm formation in commensal and uropathogenic Escherichia coli.
Published in:
MicrobiologyOpen, 2017, v. 6, n. 5, p. n/a, doi. 10.1002/mbo3.508
By:
- Cimdins, Annika;
- Simm, Roger;
- Li, Fengyang;
- Lüthje, Petra;
- Thorell, Kaisa;
- Sjöling, Åsa;
- Brauner, Annelie;
- Römling, Ute
Publication type:
Article
Genomics of Helicobacter pylori.
Published in:
Helicobacter, 2017, v. 22, p. n/a, doi. 10.1111/hel.12409
By:
- Thorell, Kaisa;
- Lehours, Philippe;
- Vale, Filipa F
Publication type:
Article
metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data.
Published in:
Molecular Ecology Resources, 2015, v. 15, n. 6, p. 1403, doi. 10.1111/1755-0998.12399
By:
- Bengtsson‐Palme, Johan;
- Hartmann, Martin;
- Eriksson, Karl Martin;
- Pal, Chandan;
- Thorell, Kaisa;
- Larsson, Dan Göran Joakim;
- Nilsson, Rolf Henrik
Publication type:
Article
Diarrheal bacterial pathogens and multi-resistant enterobacteria in the Choqueyapu River in La Paz, Bolivia.
Published in:
PLoS ONE, 2019, v. 14, n. 1, p. 1, doi. 10.1371/journal.pone.0210735
By:
- Guzman-Otazo, Jessica;
- Gonzales-Siles, Lucia;
- Poma, Violeta;
- Bengtsson-Palme, Johan;
- Thorell, Kaisa;
- Flach, Carl-Fredrik;
- Iñiguez, Volga;
- Sjöling, Åsa
Publication type:
Article
Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker.
Published in:
Bioinformatics, 2018, v. 34, n. 23, p. 4027, doi. 10.1093/bioinformatics/bty482
By:
- Bengtsson-Palme, Johan;
- Richardson, Rodney T;
- Meola, Marco;
- Wurzbacher, Christian;
- Tremblay, Émilie D;
- Thorell, Kaisa;
- Kanger, Kärt;
- Eriksson, K Martin;
- Bilodeau, Guillaume J;
- Johnson, Reed M
Publication type:
Article
Whole-Genome Sequencing Redefines Shewanella Taxonomy.
Published in:
Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01861
By:
- Thorell, Kaisa;
- Meier-Kolthoff, Jan P.;
- Sjöling, Åsa;
- Martín-Rodríguez, Alberto J.
Publication type:
Article
Identification of a Latin American-specific BabA adhesin variant through whole genome sequencing of Helicobacter pylori patient isolates from Nicaragua.
Published in:
BMC Evolutionary Biology, 2016, v. 16, p. 1, doi. 10.1186/s12862-016-0619-y
By:
- Thorell, Kaisa;
- Hosseini, Shaghayegh;
- Palacios Gonzáles, Reyna Victoria Palacios;
- Chaotham, Chatchai;
- Graham, David Y.;
- Paszat, Lawrence;
- Rabeneck, Linda;
- Lundin, Samuel B.;
- Nookaew, Intawat;
- Sjöling, Åsa
Publication type:
Article
Correction: Rapid evolution of distinct Helicobacter pylori subpopulations in the Americas.
Published in:
2017
By:
- Thorell, Kaisa;
- Yahara, Koji;
- Berthenet, Elvire;
- Lawson, Daniel J.;
- Mikhail, Jane;
- Kato, Ikuko;
- Mendez, Alfonso;
- Rizzato, Cosmeri;
- Bravo, María Mercedes;
- Suzuki, Rumiko;
- Yamaoka, Yoshio;
- Torres, Javier;
- Sheppard, Samuel K.;
- Falush, Daniel
Publication type:
Correction Notice
Rapid evolution of distinct Helicobacter pylori subpopulations in the Americas.
Published in:
PLoS Genetics, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pgen.1006546
By:
- Thorell, Kaisa;
- Yahara, Koji;
- Berthenet, Elvire;
- Lawson, Daniel J.;
- Mikhail, Jane;
- Kato, Ikuko;
- Mendez, Alfonso;
- Rizzato, Cosmeri;
- Bravo, María Mercedes;
- Suzuki, Rumiko;
- Yamaoka, Yoshio;
- Torres, Javier;
- Sheppard, Samuel K.;
- Falush, Daniel
Publication type:
Article

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