Works matching AU Thomson, Nicholas R.


Results: 103
    1
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    Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in Northeast Thailand.

    Published in:
    Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-50067-9
    By:
    • Seng, Rathanin;
    • Chomkatekaew, Chalita;
    • Tandhavanant, Sarunporn;
    • Saiprom, Natnaree;
    • Phunpang, Rungnapa;
    • Thaipadungpanit, Janjira;
    • Batty, Elizabeth M.;
    • Day, Nicholas P. J.;
    • Chantratita, Wasun;
    • Eoin West, T.;
    • Thomson, Nicholas R.;
    • Parkhill, Julian;
    • Chewapreecha, Claire;
    • Chantratita, Narisara
    Publication type:
    Article
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    Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacterial pathogens over 7 years in a single center.

    Published in:
    Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1785-1
    By:
    • Ellington, Matthew J.;
    • Heinz, Eva;
    • Wailan, Alexander M.;
    • Dorman, Matthew J.;
    • de Goffau, Marcus;
    • Cain, Amy K.;
    • Henson, Sonal P.;
    • Gleadall, Nicholas;
    • Boinett, Christine J.;
    • Dougan, Gordon;
    • Brown, Nicholas M.;
    • Woodford, Neil;
    • Parkhill, Julian;
    • Török, M. Estée;
    • Peacock, Sharon J.;
    • Thomson, Nicholas R.
    Publication type:
    Article
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    Vive la différence.

    Published in:
    Nature Reviews Microbiology, 2008, v. 6, n. 7, p. 502, doi. 10.1038/nrmicro1929
    By:
    • Thomson, Nicholas R.
    Publication type:
    Article
    7

    Genome watch: GI genomes.

    Published in:
    Nature Reviews Microbiology, 2005, v. 3, n. 5, p. 368, doi. 10.1038/nrmicro1153
    By:
    • Cerdeño-Tárraga, Ana;
    • Claesson, Marcus J.;
    • Sebaihia, Mohammed;
    • Thomson, Nicholas R.
    Publication type:
    Article
    8

    Genome watch: Livelihood hazards.

    Published in:
    Nature Reviews Microbiology, 2005, v. 3, n. 4, p. 278, doi. 10.1038/nrmicro1132
    By:
    • Sebaihia, Mohammed;
    • Thomson, Nicholas R.;
    • Crossman, Lisa;
    • Parkhill, Julian
    Publication type:
    Article
    9

    Genome watch: Chalk and cheese.

    Published in:
    Nature Reviews Microbiology, 2004, v. 2, n. 7, p. 528, doi. 10.1038/nrmicro932
    By:
    • Crossman, Lisa;
    • Cerdeño-Tárraga, Ana;
    • Thomson, Nicholas R.
    Publication type:
    Article
    10

    Evolutionary histories and antimicrobial resistance in Shigella flexneri and Shigella sonnei in Southeast Asia.

    Published in:
    Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-01905-9
    By:
    • Chung The, Hao;
    • Bodhidatta, Ladaporn;
    • Pham, Duy Thanh;
    • Mason, Carl J.;
    • Ha Thanh, Tuyen;
    • Voong Vinh, Phat;
    • Turner, Paul;
    • Hem, Sopheak;
    • Dance, David A. B.;
    • Newton, Paul N.;
    • Phetsouvanh, Rattanaphone;
    • Davong, Viengmon;
    • Thwaites, Guy E.;
    • Thomson, Nicholas R.;
    • Baker, Stephen;
    • Rabaa, Maia A.
    Publication type:
    Article
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    A simple method for directional transcriptome sequencing using Illumina technology.

    Published in:
    Nucleic Acids Research, 2009, v. 37, n. 22, p. e148, doi. 10.1093/nar/gkp811
    By:
    • Croucher, Nicholas J.;
    • Fookes, Maria C.;
    • Perkins, Timothy T.;
    • Turner, Daniel J.;
    • Marguerat, Samuel B.;
    • Keane, Thomas;
    • Quail, Michael A.;
    • He, Miao;
    • Assefa, Sammey;
    • Bähler, Jürg;
    • Kingsley, Robert A.;
    • Parkhill, Julian;
    • Bentley, Stephen D.;
    • Dougan, Gordon;
    • Thomson, Nicholas R.
    Publication type:
    Article
    17

    Escherichia coli K-12: a cooperatively developed annotation snapshot—2005.

    Published in:
    Nucleic Acids Research, 2006, v. 34, n. 1, p. 1, doi. 10.1093/nar/gkj405
    By:
    • Riley, Monica;
    • Abe, Takashi;
    • Arnaud, Martha B.;
    • Berlyn, Mary K.B.;
    • Blattner, Frederick R.;
    • Chaudhuri, Roy R.;
    • Glasner, Jeremy D.;
    • Horiuchi, Takashi;
    • Keseler, Ingrid M.;
    • Kosuge, Takehide;
    • Mori, Hirotada;
    • Perna, Nicole T.;
    • Plunkett, Guy;
    • Rudd, Kenneth E.;
    • Serres, Margrethe H.;
    • Thomas, Gavin H.;
    • Thomson, Nicholas R.;
    • Wishart, David;
    • Wanner, Barry L.
    Publication type:
    Article
    18

    Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30717-6
    By:
    • Gorrie, Claire L.;
    • Mirčeta, Mirjana;
    • Wick, Ryan R.;
    • Judd, Louise M.;
    • Lam, Margaret M. C.;
    • Gomi, Ryota;
    • Abbott, Iain J.;
    • Thomson, Nicholas R.;
    • Strugnell, Richard A.;
    • Pratt, Nigel F.;
    • Garlick, Jill S.;
    • Watson, Kerrie M.;
    • Hunter, Peter C.;
    • Pilcher, David V.;
    • McGloughlin, Steve A.;
    • Spelman, Denis W.;
    • Wyres, Kelly L.;
    • Jenney, Adam W. J.;
    • Holt, Kathryn E.
    Publication type:
    Article
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    Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22700-4
    By:
    • Hawkey, Jane;
    • Paranagama, Kalani;
    • Baker, Kate S.;
    • Bengtsson, Rebecca J.;
    • Weill, François-Xavier;
    • Thomson, Nicholas R.;
    • Baker, Stephen;
    • Cerdeira, Louise;
    • Iqbal, Zamin;
    • Hunt, Martin;
    • Ingle, Danielle J.;
    • Dallman, Timothy J.;
    • Jenkins, Claire;
    • Williamson, Deborah A.;
    • Holt, Kathryn E.
    Publication type:
    Article
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    Spatial and Genomic Data to Characterize Endemic Typhoid Transmission.

    Published in:
    Clinical Infectious Diseases, 2022, v. 74, n. 11, p. 1993, doi. 10.1093/cid/ciab745
    By:
    • Gauld, Jillian S;
    • Olgemoeller, Franziska;
    • Heinz, Eva;
    • Nkhata, Rose;
    • Bilima, Sithembile;
    • Wailan, Alexander M;
    • Kennedy, Neil;
    • Mallewa, Jane;
    • Gordon, Melita A;
    • Read, Jonathan M;
    • Heyderman, Robert S;
    • Thomson, Nicholas R;
    • Diggle, Peter J;
    • Feasey, Nicholas A
    Publication type:
    Article
    27

    Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe.

    Published in:
    Nature Genetics, 2012, v. 44, n. 9, p. 1056, doi. 10.1038/ng.2369
    By:
    • Holt, Kathryn E;
    • Baker, Stephen;
    • Weill, François-Xavier;
    • Holmes, Edward C;
    • Kitchen, Andrew;
    • Yu, Jun;
    • Sangal, Vartul;
    • Brown, Derek J;
    • Coia, John E;
    • Kim, Dong Wook;
    • Choi, Seon Young;
    • Kim, Su Hee;
    • da Silveira, Wanderley D;
    • Pickard, Derek J;
    • Farrar, Jeremy J;
    • Parkhill, Julian;
    • Dougan, Gordon;
    • Thomson, Nicholas R
    Publication type:
    Article
    28

    Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity.

    Published in:
    Nature Genetics, 2010, v. 42, n. 12, p. 1140, doi. 10.1038/ng.705
    By:
    • Morelli, Giovanna;
    • Song, Yajun;
    • Mazzoni, Camila J.;
    • Eppinger, Mark;
    • Roumagnac, Philippe;
    • Wagner, David M.;
    • Feldkamp, Mirjam;
    • Kusecek, Barica;
    • Vogler, Amy J.;
    • Li, Yanjun;
    • Yujun Cui;
    • Thomson, Nicholas R.;
    • Jombart, Thibaut;
    • Leblois, Raphael;
    • Lichtner, Peter;
    • Rahalison, Lila;
    • Petersen, Jeannine M.;
    • Balloux, Francois;
    • Keim, Paul;
    • Wirth, Thierry
    Publication type:
    Article
    29

    The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome.

    Published in:
    Nature Genetics, 2006, v. 38, n. 7, p. 779, doi. 10.1038/ng1830
    By:
    • Sebaihia, Mohammed;
    • Wren, Brendan W.;
    • Mullany, Peter;
    • Fairweather, Neil F.;
    • Minton, Nigel;
    • Stabler, Richard;
    • Thomson, Nicholas R.;
    • Roberts, Adam P.;
    • Cerdeño-Tárraga, Ana M.;
    • Hongmei Wang;
    • Holden, Matthew T. G.;
    • Wright, Anne;
    • Churcher, Carol;
    • Quail, Michael A.;
    • Baker, Stephen;
    • Bason, Nathalie;
    • Brooks, Karen;
    • Chillingworth, Tracey;
    • Cronin, Ann;
    • Davis, Paul
    Publication type:
    Article
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    The Complete Genome Sequence and Comparative Genome Analysis of the High Pathogenicity Yersinia enterocolitica Strain 8081.

    Published in:
    PLoS Genetics, 2006, v. 3, n. 6, p. 2039, doi. 10.1371/journal.pgen.0020206
    By:
    • Thomson, Nicholas R.;
    • Howard, Sarah;
    • Wren, Brendan W.;
    • Holden, Matthew T. G.;
    • Crossman, Lisa;
    • Challis, Gregory L.;
    • Churcher, Carol;
    • Mungall, Karen;
    • Brooks, Karen;
    • Chillingworth, Tracey;
    • Feltwell, Theresa;
    • Abdellah, Zahra;
    • Hauser, Heidi;
    • Jagels, Kay;
    • Maddison, Mark;
    • Moule, Sharon;
    • Sanders, Mandy;
    • Whitehead, Sally;
    • Quail, Michael A.;
    • Dougan, Gordon
    Publication type:
    Article
    33

    Brucella sp. sequence-type 27 associated with abortion in dwarf sperm whale Kogia sima.

    Published in:
    European Journal of Wildlife Research, 2021, v. 67, n. 4, p. 1, doi. 10.1007/s10344-021-01502-5
    By:
    • Hernández-Mora, Gabriela;
    • González-Barrientos, Rocío;
    • Víquez-Ruíz, Eunice;
    • Palacios-Alfaro, José David;
    • Bettoni-Rodríguez, Gianmarco;
    • Gendre, Marlène;
    • Vincent, Charline;
    • Roca-Monge, Karol;
    • Ruiz-Villalobos, Nazareth;
    • Suárez-Esquivel, Marcela;
    • Cordero-Chavarría, Minor;
    • Chaves-Olarte, Esteban;
    • Thomson, Nicholas R.;
    • Barquero-Calvo, Elías;
    • Moreno, Edgardo;
    • Guzmán-Verri, Caterina
    Publication type:
    Article
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    South Asia as a Reservoir for the Global Spread of Ciprofloxacin-Resistant Shigella sonnei: A Cross-Sectional Study.

    Published in:
    2016
    By:
    • Chung The, Hao;
    • Rabaa, Maia A.;
    • Pham Thanh, Duy;
    • De Lappe, Niall;
    • Cormican, Martin;
    • Valcanis, Mary;
    • Howden, Benjamin P.;
    • Wangchuk, Sonam;
    • Bodhidatta, Ladaporn;
    • Mason, Carl J.;
    • Nguyen Thi Nguyen, To;
    • Vu Thuy, Duong;
    • Thompson, Corinne N.;
    • Phu Huong Lan, Nguyen;
    • Voong Vinh, Phat;
    • Ha Thanh, Tuyen;
    • Turner, Paul;
    • Sar, Poda;
    • Thwaites, Guy;
    • Thomson, Nicholas R.
    Publication type:
    journal article
    36

    Brucella Genetic Variability in Wildlife Marine Mammals Populations Relates to Host Preference and Ocean Distribution.

    Published in:
    Genome Biology & Evolution, 2017, v. 9, n. 7, p. 1901, doi. 10.1093/gbe/evx137
    By:
    • Suárez-Esquivel, Marcela;
    • Baker, Kate S.;
    • Ruiz-Villalobos, Nazareth;
    • Hernández-Mora, Gabriela;
    • Barquero-Calvo, Elías;
    • González-Barrientos, Rocío;
    • Castillo-Zeledón, Amanda;
    • Jiménez-Rojas, César;
    • Chacón-Díaz, Carlos;
    • Cloeckaert, Axel;
    • Chaves-Olarte, Esteban;
    • Thomson, Nicholas R.;
    • Moreno, Edgardo;
    • Guzmán-Verri, Caterina
    Publication type:
    Article
    37

    Genome Evolution and Plasticity of Serratia marcescens, an Important Multidrug-Resistant Nosocomial Pathogen.

    Published in:
    Genome Biology & Evolution, 2014, v. 6, n. 8, p. 2096, doi. 10.1093/gbe/evu160
    By:
    • Iguchi, Atsushi;
    • Nagaya, Yutaka;
    • Pradel, Elizabeth;
    • Ooka, Tadasuke;
    • Ogura, Yoshitoshi;
    • Katsura, Keisuke;
    • Kurokawa, Ken;
    • Oshima, Kenshiro;
    • Hattori, Masahira;
    • Parkhill, Julian;
    • Sebaihia, Mohamed;
    • Coulthurst, Sarah J.;
    • Gotoh, Naomasa;
    • Thomson, Nicholas R.;
    • Ewbank, Jonathan J.;
    • Hayashi, Tetsuya
    Publication type:
    Article
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    The genus Serratia revisited by genomics.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32929-2
    By:
    • Williams, David J.;
    • Grimont, Patrick A. D.;
    • Cazares, Adrián;
    • Grimont, Francine;
    • Ageron, Elisabeth;
    • Pettigrew, Kerry A.;
    • Cazares, Daniel;
    • Njamkepo, Elisabeth;
    • Weill, François-Xavier;
    • Heinz, Eva;
    • Holden, Matthew T. G.;
    • Thomson, Nicholas R.;
    • Coulthurst, Sarah J.
    Publication type:
    Article
    42

    Vibrio cholerae O139 genomes provide a clue to why it may have failed to usher in the eighth cholera pandemic.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31391-4
    By:
    • Ramamurthy, Thandavarayan;
    • Pragasam, Agila Kumari;
    • Taylor-Brown, Alyce;
    • Will, Robert C.;
    • Vasudevan, Karthick;
    • Das, Bhabatosh;
    • Srivastava, Sunil Kumar;
    • Chowdhury, Goutam;
    • Mukhopadhyay, Asish K.;
    • Dutta, Shanta;
    • Veeraraghavan, Balaji;
    • Thomson, Nicholas R.;
    • Sharma, Naresh C.;
    • Nair, Gopinath Balakrish;
    • Takeda, Yoshifumi;
    • Ghosh, Amit;
    • Dougan, Gordon;
    • Mutreja, Ankur
    Publication type:
    Article
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    Longitudinal analysis within one hospital in sub-Saharan Africa over 20 years reveals repeated replacements of dominant clones of Klebsiella pneumoniae and stresses the importance to include temporal patterns for vaccine design considerations.

    Published in:
    Genome Medicine, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13073-024-01342-3
    By:
    • Heinz, Eva;
    • Pearse, Oliver;
    • Zuza, Allan;
    • Bilima, Sithembile;
    • Msefula, Chisomo;
    • Musicha, Patrick;
    • Siyabu, Patriciah;
    • Tewesa, Edith;
    • Graf, Fabrice E.;
    • Lester, Rebecca;
    • Lissauer, Samantha;
    • Cornick, Jennifer;
    • Lewis, Joseph M.;
    • Kawaza, Kondwani;
    • Thomson, Nicholas R.;
    • Feasey, Nicholas A.
    Publication type:
    Article
    45

    Bacterial genome-wide association study substantiates papGII of Escherichia coli as a major risk factor for urosepsis.

    Published in:
    Genome Medicine, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13073-023-01243-x
    By:
    • Cuénod, Aline;
    • Agnetti, Jessica;
    • Seth-Smith, Helena M. B.;
    • Roloff, Tim;
    • Wälchli, Denise;
    • Shcherbakov, Dimitri;
    • Akbergenov, Rashid;
    • Tschudin-Sutter, Sarah;
    • Bassetti, Stefano;
    • Siegemund, Martin;
    • Nickel, Christian H.;
    • Moran-Gilad, Jacob;
    • Keys, Timothy G.;
    • Pflüger, Valentin;
    • Thomson, Nicholas R.;
    • Egli, Adrian
    Publication type:
    Article
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    Co-evolutionary Signals Identify Burkholderia pseudomallei Survival Strategies in a Hostile Environment.

    Published in:
    Molecular Biology & Evolution, 2022, v. 39, n. 1, p. 1, doi. 10.1093/molbev/msab306
    By:
    • Chewapreecha, Claire;
    • Pensar, Johan;
    • Chattagul, Supaksorn;
    • Pesonen, Maiju;
    • Sangphukieo, Apiwat;
    • Boonklang, Phumrapee;
    • Potisap, Chotima;
    • Koosakulnirand, Sirikamon;
    • Feil, Edward J;
    • Dunachie, Susanna;
    • Chantratita, Narisara;
    • Limmathurotsakul, Direk;
    • Peacock, Sharon J;
    • Day, Nick P J;
    • Parkhill, Julian;
    • Thomson, Nicholas R;
    • Sermswan, Rasana W;
    • Corander, Jukka
    Publication type:
    Article
    49

    Brucella abortus Strain 2308 Wisconsin Genome: Importance of the Definition of Reference Strains.

    Published in:
    Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.01557
    By:
    • Suárez-Esquivel, Marcela;
    • Ruiz-Villalobos, Nazareth;
    • Castillo-Zeledón, Amanda;
    • Jiménez-Rojas, César;
    • Roop II, R. Martin;
    • Comerci, Diego J.;
    • Barquero-Calvo, Elías;
    • Chacón-Díaz, Carlos;
    • Caswell, Clayton C.;
    • Baker, Kate S.;
    • Chaves-Olarte, Esteban;
    • Thomson, Nicholas R.;
    • Moreno, Edgardo;
    • Letesson, Jean J.;
    • De Bolle, Xavier;
    • Guzmán-Verri, Caterina;
    • Salcedo, Suzana P.;
    • Tsolis, Renee M.;
    • Ficht, Thomas A.
    Publication type:
    Article
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