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Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in Northeast Thailand.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-50067-9
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- Article
Combining machine learning with high-content imaging to infer ciprofloxacin susceptibility in isolates of Salmonella Typhimurium.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49433-4
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- Article
Longitudinal analysis within one hospital in sub-Saharan Africa over 20 years reveals repeated replacements of dominant clones of Klebsiella pneumoniae and stresses the importance to include temporal patterns for vaccine design considerations.
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- Genome Medicine, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13073-024-01342-3
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- Article
Melioidosis in Patients with COVID-19 Exposed to Contaminated Tap Water, Thailand, 2021.
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- Emerging Infectious Diseases, 2024, v. 30, n. 4, p. 791, doi. 10.3201/eid3004.231476
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- Article
Epidemiology and Risk Factors for Diarrheagenic Escherichia coli Carriage among Children in Northern Ibadan, Nigeria.
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- American Journal of Tropical Medicine & Hygiene, 2023, v. 109, n. 6, p. 1223, doi. 10.4269/ajtmh.22-0618
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- Article
Bacterial genome-wide association study substantiates papGII of Escherichia coli as a major risk factor for urosepsis.
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- Genome Medicine, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13073-023-01243-x
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- Article
Multidrug resistance plasmids underlie clonal expansions and international spread of Salmonella enterica serotype 1,4,[5],12:i:- ST34 in Southeast Asia.
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- Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-05365-1
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Genomic epidemiology of Vibrio cholerae during a mass vaccination campaign of displaced communities in Bangladesh.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39415-3
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- Article
The regulon of Brucella abortus two-component system BvrR/BvrS reveals the coordination of metabolic pathways required for intracellular life.
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- PLoS ONE, 2022, v. 17, n. 9, p. 1, doi. 10.1371/journal.pone.0274397
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- Article
The genus Serratia revisited by genomics.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32929-2
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Vibrio cholerae O139 genomes provide a clue to why it may have failed to usher in the eighth cholera pandemic.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31391-4
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Spatial and Genomic Data to Characterize Endemic Typhoid Transmission.
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- Clinical Infectious Diseases, 2022, v. 74, n. 11, p. 1993, doi. 10.1093/cid/ciab745
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- Article
Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30717-6
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- Article
Panakeia - a universal tool for bacterial pangenome analysis.
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- BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08303-3
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- Article
Isolation and Characterisation of Bacteriophage Selective for Key Acinetobacter baumannii Capsule Chemotypes.
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- Pharmaceuticals (14248247), 2022, v. 15, n. 4, p. N.PAG, doi. 10.3390/ph15040443
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- Article
Population structure analysis and laboratory monitoring of Shigella by core-genome multilocus sequence typing.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28121-1
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- Article
Co-evolutionary Signals Identify Burkholderia pseudomallei Survival Strategies in a Hostile Environment.
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- Molecular Biology & Evolution, 2022, v. 39, n. 1, p. 1, doi. 10.1093/molbev/msab306
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Exploring bacterial diversity via a curated and searchable snapshot of archived DNA sequences.
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- PLoS Biology, 2021, v. 19, n. 11, p. 1, doi. 10.1371/journal.pbio.3001421
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Genetic diversity of Salmonella Paratyphi A isolated from enteric fever patients in Bangladesh from 2008 to 2018.
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- PLoS Neglected Tropical Diseases, 2021, v. 15, n. 10, p. 1, doi. 10.1371/journal.pntd.0009748
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- Article
Brucella sp. sequence-type 27 associated with abortion in dwarf sperm whale Kogia sima.
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- European Journal of Wildlife Research, 2021, v. 67, n. 4, p. 1, doi. 10.1007/s10344-021-01502-5
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Characterisation of Bacteriophage-Encoded Depolymerases Selective for Key Klebsiella pneumoniae Capsular Exopolysaccharides.
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- Frontiers in Cellular & Infection Microbiology, 2021, v. 11, p. 1, doi. 10.3389/fcimb.2021.686090
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Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22700-4
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Epidemiologic and Genomic Reidentification of Yaws, Liberia.
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- 2021
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- journal article
Evolutionary histories and antimicrobial resistance in Shigella flexneri and Shigella sonnei in Southeast Asia.
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- Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-01905-9
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- Article
Genomics of the Argentinian cholera epidemic elucidate the contrasting dynamics of epidemic and endemic Vibrio cholerae.
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- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18647-7
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- Article
Genetic Markers in S. Paratyphi C Reveal Primary Adaptation to Pigs.
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- Microorganisms, 2020, v. 8, n. 5, p. 657, doi. 10.3390/microorganisms8050657
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- Article
Persistence of Brucella abortus lineages revealed by genomic characterization and phylodynamic analysis.
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- PLoS Neglected Tropical Diseases, 2020, v. 14, n. 4, p. 1, doi. 10.1371/journal.pntd.0008235
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- Article
The Nature and Extent of Plasmid Variation in Chlamydia trachomatis.
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- Microorganisms, 2020, v. 8, n. 3, p. 373, doi. 10.3390/microorganisms8030373
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- Article
Novel Subclone of Carbapenem-Resistant Klebsiella pneumoniae Sequence Type 11 with Enhanced Virulence and Transmissibility, China.
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- 2020
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- journal article
Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from South and Southeast Asia.
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- Genome Medicine, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13073-019-0706-y
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- Article
Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacterial pathogens over 7 years in a single center.
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- Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1785-1
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- Article
Genomic epidemiology of syphilis reveals independent emergence of macrolide resistance across multiple circulating lineages.
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- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11216-7
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- Article
Determining antimicrobial susceptibility in Salmonella enterica serovar Typhimurium through whole genome sequencing: a comparison against multiple phenotypic susceptibility testing methods.
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- BMC Microbiology, 2019, v. 19, n. 1, p. N.PAG, doi. 10.1186/s12866-019-1520-9
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- Article
Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages.
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- 2019
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- journal article
Retrospective application of transposon-directed insertion-site sequencing to investigate niche-specific virulence of Salmonella Typhimurium in cattle.
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- BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-018-5319-0
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- Article
Antimicrobial-Resistant Klebsiella pneumoniae Carriage and Infection in Specialized Geriatric Care Wards Linked to Acquisition in the Referring Hospital.
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- Clinical Infectious Diseases, 2018, v. 67, n. 2, p. 161, doi. 10.1093/cid/ciy027
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- Article
Microevolution and Patterns of Transmission of Shigella sonnei within Cyclic Outbreaks Shigellosis, Israel.
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- 2018
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- journal article
Direct Whole-Genome Sequencing of Cutaneous Strains of Haemophilus ducreyi.
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- 2018
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- journal article
Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure.
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- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4399-6
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- Article
Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice.
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- PLoS ONE, 2017, v. 12, n. 8, p. 1, doi. 10.1371/journal.pone.0181365
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- Article
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients.
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- Clinical Infectious Diseases, 2017, v. 65, n. 2, p. 208, doi. 10.1093/cid/cix270
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- Article
Brucella Genetic Variability in Wildlife Marine Mammals Populations Relates to Host Preference and Ocean Distribution.
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- Genome Biology & Evolution, 2017, v. 9, n. 7, p. 1901, doi. 10.1093/gbe/evx137
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- Article
Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing.
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- PLoS Neglected Tropical Diseases, 2017, v. 11, n. 6, p. 1, doi. 10.1371/journal.pntd.0005671
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- Article
Brucella neotomae Infection in Humans, Costa Rica.
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- 2017
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- journal article
Genomic landscape of extended-spectrum β-lactamase resistance in Escherichia coli from an urban African setting.
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- 2017
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- journal article
Genomic variations leading to alterations in cell morphology of Campylobacter spp.
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- Scientific Reports, 2016, p. 38303, doi. 10.1038/srep38303
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- Article
A genomic island in Vibrio cholerae with VPI-1 site-specific recombination characteristics contains CRISPR-Cas and type VI secretion modules.
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- Scientific Reports, 2016, p. 36891, doi. 10.1038/srep36891
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- Article
Brucella abortus Strain 2308 Wisconsin Genome: Importance of the Definition of Reference Strains.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.01557
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- Article
Travel- and Community-Based Transmission of Multidrug-Resistant Shigella sonnei Lineage among International Orthodox Jewish Communities.
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- 2016
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- journal article
Salmonella Enteritidis Isolate Harboring Multiple Efflux Pumps and Pathogenicity Factors, Shows Absence of O Antigen Polymerase Gene.
- Published in:
- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.01130
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- Article