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Distinct histopathological features are associated with molecular subtypes and outcome in low grade serous ovarian carcinoma.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-34627-5
By:
- Hollis, Robert L.;
- Thomson, John P.;
- van Baal, Juliette;
- Ilenkovan, Narthana;
- Churchman, Michael;
- van de Vijver, Koen;
- Dijk, Frederike;
- Meynert, Alison M.;
- Bartos, Clare;
- Rye, Tzyvia;
- Croy, Ian;
- Diana, Patricia;
- van Gent, Mignon;
- Creedon, Helen;
- Nirsimloo, Rachel;
- Lok, Christianne;
- Gourley, Charlie;
- Herrington, C. Simon
Publication type:
Article
Comparative analysis of affinity-based 5-hydroxymethylation enrichment techniques.
Published in:
Nucleic Acids Research, 2014, v. 42, n. 6, p. 4142, doi. 10.1093/nar/gku089
By:
- Thomson, John P.;
- Hunter, Jennifer M.;
- Nestor, Colm E.;
- Dunican, Donncha S.;
- Terranova, Rémi;
- Moggs, Jonathan G.;
- Meehan, Richard R.
Publication type:
Article
Comparative analysis of affinity-based 5-hydroxymethylation enrichment techniques.
Published in:
Nucleic Acids Research, 2013, v. 41, n. 22, p. e206, doi. 10.1093/nar/gkt1080
By:
- Thomson, John P.;
- Hunter, Jennifer M.;
- Nestor, Colm E.;
- Dunican, Donncha S.;
- Terranova, Rémi;
- Moggs, Jonathan G.;
- Meehan, Richard R.
Publication type:
Article
Dynamic changes in 5-hydroxymethylation signatures underpin early and late events in drug exposed liver.
Published in:
Nucleic Acids Research, 2013, v. 41, n. 11, p. 5639, doi. 10.1093/nar/gkt232
By:
- Thomson, John P.;
- Hunter, Jennifer M.;
- Lempiäinen, Harri;
- Müller, Arne;
- Terranova, Rémi;
- Moggs, Jonathan G.;
- Meehan, Richard R.
Publication type:
Article
Identifying and overcoming a mechanism of resistance to WEE1 kinase inhibitor AZD1775 in high grade serous ovarian cancer cells.
Published in:
European Journal of Gynaecological Oncology, 2022, v. 43, n. 2, p. 183, doi. 10.31083/j.ejgo4302024
By:
- Gomez, Miriam K.;
- Thomson, John P.;
- Grimes, Graeme R.;
- Wang, Anderson T.;
- Churchman, Michael;
- O'Connor, Mark J.;
- Gourley, Charlie;
- Melton, David W.
Publication type:
Article
CpG islands influence chromatin structure via the CpG-binding protein Cfp1.
Published in:
Nature, 2010, v. 464, n. 7291, p. 1082, doi. 10.1038/nature08924
By:
- Thomson, John P.;
- Skene, Peter J.;
- Selfridge, Jim;
- Clouaire, Thomas;
- Guy, Jacky;
- Webb, Shaun;
- Kerr, Alastair R. W.;
- Deaton, Aimée;
- Andrews, Rob;
- James, Keith D.;
- Turner, Daniel J.;
- Illingworth, Robert;
- Bird, Adrian
Publication type:
Article
Hypoxia determines survival outcomes of bacterial infection through HIF-1α–dependent reprogramming of leukocyte metabolism.
Published in:
Science Immunology, 2017, v. 2, n. 8, p. 1, doi. 10.1126/sciimmunol.aal2861
By:
- Thompson, A. A. Roger;
- Dickinson, Rebecca S.;
- Murphy, Fiona;
- Thomson, John P.;
- Marriott, Helen M.;
- Tavares, Adriana;
- Willson, Joseph;
- Williams, Lynne;
- Lewis, Amy;
- Mirchandani, Ananda;
- Dos Santos Coelho, Patricia;
- Doherty, Catherine;
- Ryan, Eilise;
- Watts, Emily;
- Morton, Nicholas M.;
- Forbes, Shareen;
- Stimson, Roland H.;
- Hameed, Abdul G.;
- Arnold, Nadine;
- Preston, Julie A.
Publication type:
Article
Rapid reprogramming of epigenetic and transcriptional profiles in mammalian culture systems.
Published in:
Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-014-0576-y
By:
- Nestor, Colm E.;
- Ottaviano, Raffaele;
- Reinhard, Diana;
- Cruickshanks, Hazel A.;
- Mjoseng, Heidi K.;
- McPherson, Rhoanne C.;
- Lentini, Antonio;
- Thomson, John P.;
- Dunican, Donncha S.;
- Pennings, Sari;
- Anderton, Stephen M.;
- Benson, Mikael;
- Meehan, Richard R.
Publication type:
Article
Deep C diving: mapping the low-abundance modifications of the DNA demethylation pathway.
Published in:
Genome Biology, 2013, v. 14, n. 5, p. 118, doi. 10.1186/gb-2013-14-5-118
By:
- Thomson, John P;
- Hunter, Jennifer M;
- Meehan, Richard R
Publication type:
Article
Non-genotoxic carcinogen exposure induces defined changes in the 5-hydroxymethylome.
Published in:
Genome Biology, 2012, v. 13, n. 10, p. 1, doi. 10.1186/gb-2012-13-10-R93
By:
- Thomson, John P.;
- Lempiäinen, Harri;
- Hackett, Jamie A.;
- Nestor, Colm E.;
- Müller, Arne;
- Bolognani, Federico;
- Oakeley, Edward J.;
- Schübeler, Dirk;
- Terranova, Rémi;
- Reinhardt, Diana;
- Moggs, Jonathan G.;
- Meehan, Richard R.
Publication type:
Article
Integrated molecular characterisation of endometrioid ovarian carcinoma identifies opportunities for stratification.
Published in:
NPJ Precision Oncology, 2021, v. 5, n. 1, p. 1, doi. 10.1038/s41698-021-00187-y
By:
- Hollis, Robert L.;
- Stanley, Barbara;
- Thomson, John P.;
- Churchman, Michael;
- Croy, Ian;
- Rye, Tzyvia;
- Bartos, Clare;
- Nussey, Fiona;
- Mackean, Melanie;
- Meynert, Alison M.;
- Semple, Colin A.;
- Gourley, Charlie;
- Herrington, C. Simon
Publication type:
Article
Activation of transcription factor circuity in 2i-induced ground state pluripotency is independent of repressive global epigenetic landscapes.
Published in:
Nucleic Acids Research, 2020, v. 48, n. 14, p. 7748, doi. 10.1093/nar/gkaa529
By:
- Shukla, Ruchi;
- Mjoseng, Heidi K;
- Thomson, John P;
- Kling, Simon;
- Sproul, Duncan;
- Dunican, Donncha S;
- Ramsahoye, Bernard;
- Wongtawan, Tuempong;
- Treindl, Fridolin;
- Templin, Markus F;
- Adams, Ian R;
- Pennings, Sari;
- Meehan, Richard R
Publication type:
Article
Investigation into the role of the germline epigenome in the transmission of glucocorticoid-programmed effects across generations.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1422-4
By:
- Cartier, Jessy;
- Smith, Thomas;
- Thomson, John P.;
- Rose, Catherine M.;
- Khulan, Batbayar;
- Heger, Andreas;
- Meehan, Richard R.;
- Drake, Amanda J.
Publication type:
Article
Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions.
Published in:
Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1185-3
By:
- Cole, John J.;
- Robertson, Neil A.;
- Rather, Mohammed Iqbal;
- Thomson, John P.;
- McBryan, Tony;
- Sproul, Duncan;
- Tina Wang;
- Brock, Claire;
- Clark, William;
- Ideker, Trey;
- Meehan, Richard R.;
- Miller, Richard A.;
- Brown-Borg, Holly M.;
- Adams, Peter D.
Publication type:
Article
Scottish COVID Cancer Immunity Prevalence Study: A Longitudinal Study of SARS-CoV-2 Immune Response in Patients Receiving Anti–Cancer Treatment.
Published in:
Oncologist, 2023, v. 28, n. 3, p. e145, doi. 10.1093/oncolo/oyac257
By:
- Purshouse, Karin;
- Thomson, John P;
- Vallet, Mahéva;
- Alexander, Lorna;
- Bonisteel, Isaac;
- Brennan, Maree;
- Cameron, David A;
- Figueroa, Jonine D;
- Furrie, Elizabeth;
- Haig, Pamela;
- Heck, Mattea;
- McCaughan, Hugh;
- Mitchell, Paul;
- McVicars, Heather;
- Primrose, Lorraine;
- Silva, Ines;
- Templeton, Kate;
- Wilson, Natalie;
- Hall, Peter S
Publication type:
Article
Phenobarbital Induces Cell Cycle Transcriptional Responses in Mouse Liver Humanized for Constitutive Androstane and Pregnane X Receptors.
Published in:
Toxicological Sciences, 2014, v. 139, n. 2, p. 501, doi. 10.1093/toxsci/kfu038
By:
- Luisier, Raphaëlle;
- Lempiäinen, Harri;
- Scherbichler, Nina;
- Braeuning, Albert;
- Geissler, Miriam;
- Dubost, Valerie;
- Müller, Arne;
- Scheer, Nico;
- Chibout, Salah-Dine;
- Hara, Hisanori;
- Picard, Frank;
- Theil, Diethilde;
- Couttet, Philippe;
- Vitobello, Antonio;
- Grenet, Olivier;
- Grasl-Kraupp, Bettina;
- Ellinger-Ziegelbauer, Heidrun;
- Thomson, John P.;
- Meehan, Richard R.;
- Elcombe, Clifford R.
Publication type:
Article
Identification of Dlk1-Dio3 Imprinted Gene Cluster Noncoding RNAs as Novel Candidate Biomarkers for Liver Tumor Promotion.
Published in:
Toxicological Sciences, 2013, v. 131, n. 2, p. 375
By:
- Lempiäinen, Harri;
- Couttet, Philippe;
- Bolognani, Federico;
- Müller, Arne;
- Dubost, Valérie;
- Luisier, Raphaëlle;
- Del Rio Espinola, Alberto;
- Vitry, Veronique;
- Unterberger, Elif B.;
- Thomson, John P.;
- Treindl, Fridolin;
- Metzger, Ute;
- Wrzodek, Clemens;
- Hahne, Florian;
- Zollinger, Tulipan;
- Brasa, Sarah;
- Kalteis, Magdalena;
- Marcellin, Magali;
- Giudicelli, Fanny;
- Braeuning, Albert
Publication type:
Article
Molecular stratification of endometrioid ovarian carcinoma predicts clinical outcome.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18819-5
By:
- Hollis, Robert L.;
- Thomson, John P.;
- Stanley, Barbara;
- Churchman, Michael;
- Meynert, Alison M.;
- Rye, Tzyvia;
- Bartos, Clare;
- Iida, Yasushi;
- Croy, Ian;
- Mackean, Melanie;
- Nussey, Fiona;
- Okamoto, Aikou;
- Semple, Colin A.;
- Gourley, Charlie;
- Herrington, C. Simon
Publication type:
Article

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