Works by Thomas, Susan Idicula

Results: 48

Identification and Evaluation of Besifloxacin as Repurposed Antifungal Drug in Combination With Fluconazole Against Candida albicans.

Published in:

Chemical Biology & Drug Design, 2025, v. 105, n. 6, p. 1, doi. 10.1111/cbdd.70138

By:

Chakraborty, Shuvechha;
Pawaskar, Ameya;
Metkari, Siddhanath;
Madan, Taruna;
Idicula‐Thomas, Susan

Publication type:

Article

Gestational Aging on Fast Forward: The Epigenetic Link to Recurrent Pregnancy Loss.

Published in:

American Journal of Reproductive Immunology, 2025, v. 93, n. 6, p. 1, doi. 10.1111/aji.70114

By:

Farooqui, Anam;
Idicula‐Thomas, Susan

Publication type:

Article

PBIT: Pipeline Builder for Identification of drug Targets for infectious diseases.

Published in:

Bioinformatics, 2017, v. 33, n. 6, p. 929, doi. 10.1093/bioinformatics/btw760

By:

Shende, Gauri;
Haldankar, Harshala;
Barai, Ram Shankar;
Bharmal, Mohammed Husain;
Shetty, Vinit;
Idicula-Thomas, Susan

Publication type:

Article

A support vector machine-based method for predicting the propensity of a protein to be soluble or to form inclusion body on overexpression in Escherichia coli.

Published in:

Bioinformatics, 2006, v. 22, n. 3, p. 278, doi. 10.1093/bioinformatics/bti810

By:

Susan Idicula-Thomas;
Abhijit J. Kulkarni

Publication type:

Article

Correlation Between the Structural Stability and Aggregation Propensity of Proteins.

Published in:

In Silico Biology, 2007, v. 7, n. 2, p. 225, doi. 10.3233/isb-00293

By:

Idicula-Thomas, Susan;
Balaji, Petety V.

Publication type:

Article

Mammalian cysteine‐rich secretory proteins interact with plasma membrane Ca2+ exporter PMCA4b.

Published in:

Andrology, 2024, v. 12, n. 5, p. 1096, doi. 10.1111/andr.13549

By:

Miya, Vaidehi;
Kumar, Chandan;
Breed, Ananya A.;
Idicula‐Thomas, Susan;
Pathak, Bhakti R.

Publication type:

Article

FSHR antagonists can trigger a PCOS-like state.

Published in:

Systems Biology in Reproductive Medicine, 2022, v. 68, n. 2, p. 129, doi. 10.1080/19396368.2021.2010837

By:

Waghu, Faiza Hanif;
Desai, Karishma;
Srinivasan, Sumana;
Prabhudesai, Kaushiki S.;
Dighe, Vikas;
Venkatesh, Kareenhalli V.;
Idicula-Thomas, Susan

Publication type:

Article

A Recombinant Fragment of Human Surfactant Protein D Binds Spike Protein and Inhibits Infectivity and Replication of SARS-CoV-2 in Clinical Samples.

Published in:

American Journal of Respiratory Cell & Molecular Biology, 2021, v. 65, n. 1, p. 41, doi. 10.1165/rcmb.2021-0005OC

By:

Madan, Taruna;
Biswas, Barnali;
Varghese, Praveen M.;
Subedi, Rambhadur;
Pandit, Hrishikesh;
Idicula-Thomas, Susan;
Kundu, Indra;
Rooge, Sheetalnath;
Agarwal, Reshu;
Tripathi, Dinesh M.;
Kaur, Savneet;
Gupta, Ekta;
Gupta, Sanjeev K.;
Kishore, Uday

Publication type:

Article

Anti-HSP90 autoantibodies in sera of infertile women identify a dominant, conserved epitope EP6 (380-389) of HSP90 beta protein.

Published in:

Reproductive Biology & Endocrinology, 2011, v. 9, n. 1, p. 16, doi. 10.1186/1477-7827-9-16

By:

Pires, Eusebio S.;
Choudhury, Asmita K.;
Idicula-Thomas, Susan;
Khole, Vrinda V.

Publication type:

Article

Effect of high intratesticular estrogen on globalgene expression and testicular cell number in rats.

Published in:

Reproductive Biology & Endocrinology, 2010, v. 8, p. 72, doi. 10.1186/1477-7827-8-72

By:

Balasinor, Nafisa H.;
D'Souza, Ryan;
Nanaware, Padma;
Idicula-Thomas, Susan;
Kedia-Mokashi, Neelam;
Zuping He;
Dym, Martin

Publication type:

Article

EpiCandIn: An open online resource for epidemiology of Candida infections in India.

Published in:

Indian Journal of Medical Research, 2024, v. 159, n. 6, p. 1, doi. 10.25259/ijmr_886_23

By:

Rahate, Kshitija;
Arshi, Anam;
Barai, Ram Shankar;
Chakraborty, Shuvechha;
Idicula-Thomas, Susan

Publication type:

Article

Surfactant Protein D Inhibits HIV-1 Infection of Target Cells via Interference with gp120-CD4 Interaction and Modulates Pro-Inflammatory Cytokine Production.

Published in:

PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0102395

By:

Pandit, Hrishikesh;
Gopal, Sandhya;
Sonawani, Archana;
Yadav, Ajit Kumar;
Qaseem, Asif S.;
Warke, Himangi;
Patil, Anushree;
Gajbhiye, Rahul;
Kulkarni, Vijay;
Al-Mozaini, Maha Ahmed;
Idicula-Thomas, Susan;
Kishore, Uday;
Madan, Taruna

Publication type:

Article

In Silico Study on Binding Specificity of Gonadotropins and Their Receptors: Design of a Novel and Selective Peptidomimetic for Human Follicle Stimulating Hormone Receptor

Published in:

PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0064475

By:

Sonawani, Archana;
Niazi, Sarfaraj;
Idicula-Thomas, Susan

Publication type:

Article

Identification of Novel Mutations in HEXA Gene in Children Affected with Tay Sachs Disease from India.

Published in:

PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0039122

By:

Mistri, Mehul;
Tamhankar, Parag M .;
Sheth, Frenny;
Sanghavi, Daksha;
Kondurkar, Pratima;
Patil, Swapnil;
Idicula-Thomas, Susan;
Gupta, Sarita;
Sheth, Jayesh

Publication type:

Article

A QSAR modeling approach for predicting myeloid antimicrobial peptides with high sequence similarity.

Published in:

Chemical Biology & Drug Design, 2020, v. 96, n. 6, p. 1408, doi. 10.1111/cbdd.13749

By:

Waghu, Faiza Hanif;
Gawde, Ulka;
Gomatam, Anish;
Coutinho, Evans;
Idicula‐Thomas, Susan

Publication type:

Article

Genomic and computational analysis of four novel variants of MPL gene in Congenital Amegakaryocytic Thrombocytopenia.

Published in:

Annals of Hematology, 2023, v. 102, n. 10, p. 2683, doi. 10.1007/s00277-023-05347-7

By:

Shah, Anjali;
Kumar, Chandan;
Shanmukhaiah, Chandrakala;
Rajendran, Aruna;
Mudaliar, Sangeeta;
Idicula-Thomas, Susan;
Vundinti, Babu Rao

Publication type:

Article

Protein aggregation: A perspective from amyloid and inclusion-body formation.

Published in:

Current Science (00113891), 2007, v. 92, n. 6, p. 758

By:

Idicula-Thomas, Susan;
Balaji, Petety V.

Publication type:

Article

Comparison of machine learning algorithms applied to symptoms to determine infectious causes of death in children: national survey of 18,000 verbal autopsies in the Million Death Study in India.

Published in:

2021

By:

Idicula-Thomas, Susan;
Gawde, Ulka;
Jha, Prabhat

Publication type:

journal article

Protein-Protein Interaction between Surfactant Protein D and DC-SIGN via C-Type Lectin Domain Can Suppress HIV-1 Transfer.

Published in:

Frontiers in Immunology, 2017, p. 1, doi. 10.3389/fimmu.2017.00834

By:

Dodagatta-Marri, Eswari;
Mitchell, Daniel A.;
Pandit, Hrishikesh;
Sonawani, Archana;
Murugaiah, Valarmathy;
Idicula-Thomas, Susan;
Nal, Béatrice;
Al-Mozaini, Maha M.;
Kaur, Anuvinder;
Madan, Taruna;
Kishore, Uday

Publication type:

Article

Leveraging family-specific signatures for AMP discovery and high-throughput annotation.

Published in:

Scientific Reports, 2016, p. 24684, doi. 10.1038/srep24684

By:

Waghu, Faiza Hanif;
Barai, Ram Shankar;
Idicula-Thomas, Susan

Publication type:

Article

Expanding the therapeutic options for Candida infections using novel inhibitors of secreted aspartyl proteases.

Published in:

Drug Development Research, 2023, v. 84, n. 1, p. 96, doi. 10.1002/ddr.22015

By:

Chakraborty, Shuvechha;
Rahate, Kshitija;
Kumar, Chandan;
Idicula‐Thomas, Susan

Publication type:

Article

Cervical cancer in Indian women reveals contrasting association among common sub-family of HLA class I alleles.

Published in:

Immunogenetics, 2014, v. 66, n. 12, p. 683, doi. 10.1007/s00251-014-0805-2

By:

Gokhale, Priyanka;
Mania-Pramanik, Jayanti;
Sonawani, Archana;
Idicula-Thomas, Susan;
Kerkar, Shilpa;
Tongaonkar, Hemant;
Chaudhari, Hemangi;
Warke, Himangi;
Salvi, Vinita

Publication type:

Article

Enrichment analyses of diseases and pathways associated with precocious puberty using PrecocityDB.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-83446-z

By:

Sharma, Mridula;
Kundu, Indra;
Barai, Ram Shankar;
Bhaye, Sameeksha;
Desai, Karishma;
Pokar, Khushal;
Idicula-Thomas, Susan

Publication type:

Article

PCOSKBR2: a database of genes, diseases, pathways, and networks associated with polycystic ovary syndrome.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-71418-8

By:

Sharma, Mridula;
Barai, Ram Shankar;
Kundu, Indra;
Bhaye, Sameeksha;
Pokar, Khushal;
Idicula-Thomas, Susan

Publication type:

Article

Pathway Analysis of Genome Wide Association Studies (GWAS) Data Associated with Male Infertility.

Published in:

Reproductive Medicine, 2022, v. 3, n. 3, p. 235, doi. 10.3390/reprodmed3030018

By:

Salvi, Rupashree;
Gawde, Ulka;
Idicula-Thomas, Susan;
Biswas, Barnali

Publication type:

Article

Membrane Interactome of a Recombinant Fragment of Human Surfactant Protein D Reveals GRP78 as a Novel Binding Partner in PC3, a Metastatic Prostate Cancer Cell Line.

Published in:

Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2020.600660

By:

Thakur, Gargi;
Sathe, Gajanan;
Kundu, Indra;
Biswas, Barnali;
Gautam, Poonam;
Alkahtani, Saad;
Idicula-Thomas, Susan;
Sirdeshmukh, Ravi;
Kishore, Uday;
Madan, Taruna

Publication type:

Article

HPV16 E6 variants: Frequency, association with HPV types and in silico analysis of the identified novel variants.

Published in:

Journal of Medical Virology, 2014, v. 86, n. 6, p. 968, doi. 10.1002/jmv.23924

By:

Gokhale, Priyanka S.;
Sonawani, Archana;
Idicula‐Thomas, Susan;
Kerkar, Shilpa;
Tongaonkar, Hemant;
Mania‐Pramanik, Jayanti

Publication type:

Article

Designing Antibacterial Peptides with Enhanced Killing Kinetics.

Published in:

Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00325

By:

Waghu, Faiza H.;
Joseph, Shaini;
Ghawali, Sanket;
Martis, Elvis A.;
Madan, Taruna;
Venkatesh, Kareenhalli V.;
Idicula-Thomas, Susan

Publication type:

Article

CAMPR4: a database of natural and synthetic antimicrobial peptides.

Published in:

Nucleic Acids Research, 2023, v. 51, n. D1, p. D377, doi. 10.1093/nar/gkac933

By:

Gawde, Ulka;
Chakraborty, Shuvechha;
Waghu, Faiza Hanif;
Barai, Ram Shankar;
Khanderkar, Ashlesha;
Indraguru, Rishikesh;
Shirsat, Tanmay;
Idicula-Thomas, Susan

Publication type:

Article

Tubulin acetylation: A novel functional avenue for CDYL in sperm.

Published in:

Cytoskeleton, 2017, v. 74, n. 9, p. 331, doi. 10.1002/cm.21381

By:

Parab, Sweta;
Dalvi, Veena;
Mylavaram, Sushma;
Kishore, Abhipriya;
Idicula‐Thomas, Susan;
Sonawane, Shobha;
Parte, Priyanka

Publication type:

Article

Cover Image, Volume 74, Issue 9.

Published in:

Cytoskeleton, 2017, v. 74, n. 9, p. C1, doi. 10.1002/cm.21406

By:

Parab, Sweta;
Dalvi, Veena;
Mylavaram, Sushma;
Kishore, Abhipriya;
Idicula‐Thomas, Susan;
Sonawane, Shobha;
Parte, Priyanka

Publication type:

Article

N-Linked Glycosylation in Chinese Hamster Ovary Cells Is Critical for Insulin-like Growth Factor 1 Signaling.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 23, p. 14952, doi. 10.3390/ijms232314952

By:

Salvi, Rupashree;
Kumar, Chandan;
Brahmbhatt, Krupanshi;
Subedi, Rambhadur;
Idicula-Thomas, Susan;
Madan, Taruna;
Biswas, Barnali

Publication type:

Article

Understanding the relationship between the primary structure of proteins and their amyloidogenic propensity: clues from inclusion body formation.

Published in:

PEDS: Protein Engineering, Design & Selection, 2005, v. 18, n. 4, p. 175, doi. 10.1093/protein/gzi022

By:

Susan Idicula-Thomas;
Petety V. Balaji

Publication type:

Article

Understanding the relationship between the primary structure of proteins and their amyloidogenic propensity: clues from inclusion body formation.

Published in:

PEDS: Protein Engineering, Design & Selection, 2005, v. 18, n. 4, p. 175, doi. 10.1093/protein/gzi022

By:

Idicula-Thomas, Susan;
Balaji, Petety V.

Publication type:

Article

PBITV3: A robust and comprehensive tool for screening pathogenic proteomes for drug targets and prioritizing vaccine candidates.

Published in:

Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 2, p. 1, doi. 10.1002/pro.4892

By:

Chakraborty, Shuvechha;
Askari, Mehdi;
Barai, Ram Shankar;
Idicula‐Thomas, Susan

Publication type:

Article

Collection of antimicrobial peptides database and its derivatives: Applications and beyond.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 36, doi. 10.1002/pro.3714

By:

Waghu, Faiza Hanif;
Idicula‐Thomas, Susan

Publication type:

Article

Understanding the relationship between the primary structure of proteins and its propensity to be soluble on overexpression in Escherichia coli.

Published in:

Protein Science: A Publication of the Protein Society, 2005, v. 14, n. 3, p. 582, doi. 10.1110/ps.041009005

By:

Idicula-Thomas, Susan;
Balaji, Petety V.

Publication type:

Article

Investigating role of positively selected genes and mutation sites of ERG11 in drug resistance of Candida albicans.

Published in:

Archives of Microbiology, 2024, v. 206, n. 11, p. 1, doi. 10.1007/s00203-024-04159-1

By:

Fandilolu, Prayagraj;
Kumar, Chandan;
Palia, Dushyant;
Idicula-Thomas, Susan

Publication type:

Article

Investigating role of positively selected genes and mutation sites of ERG11 in drug resistance of Candida albicans.

Published in:

Archives of Microbiology, 2024, v. 206, n. 11, p. 1, doi. 10.1007/s00203-024-04159-1

By:

Fandilolu, Prayagraj;
Kumar, Chandan;
Palia, Dushyant;
Idicula-Thomas, Susan

Publication type:

Article

Human surfactant protein D facilitates SARS-CoV-2 pseudotype binding and entry in DC-SIGN expressing cells, and downregulates spike protein induced inflammation.

Published in:

Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.960733

By:

Beirag, Nazar;
Kumar, Chandan;
Madan, Taruna;
Shamji, Mohamed H.;
Bulla, Roberta;
Mitchell, Daniel;
Murugaiah, Valarmathy;
Neto, Martin Mayora;
Temperton, Nigel;
Idicula-Thomas, Susan;
Varghese, Praveen M.;
Kishore, Uday

Publication type:

Article

Human Properdin Released By Infiltrating Neutrophils Can Modulate Influenza A Virus Infection.

Published in:

Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.747654

By:

Varghese, Praveen M.;
Mukherjee, Shuvechha;
Al-Mohanna, Futwan A.;
Saleh, Souad M.;
Almajhdi, Fahad N.;
Beirag, Nazar;
Alkahtani, Saad H.;
Rajkumari, Reena;
Nal Rogier, Beatrice;
Sim, Robert B.;
Idicula-Thomas, Susan;
Madan, Taruna;
Murugaiah, Valarmathy;
Kishore, Uday

Publication type:

Article

PCOSKB: A KnowledgeBase on genes, diseases, ontology terms and biochemical pathways associated with PolyCystic Ovary Syndrome.

Published in:

Nucleic Acids Research, 2016, v. 44, p. D1032, doi. 10.1093/nar/gkv1146

By:

Joseph, Shaini;
Barai, Ram Shankar;
Bhujbalrao, Rasika;
Idicula-Thomas, Susan

Publication type:

Article

CAMPR3: a database on sequences, structures and signatures of antimicrobial peptides.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 1, p. D1094, doi. 10.1093/nar/gkv1051

By:

Waghu, Faiza Hanif;
Barai, Ram Shankar;
Gurung, Pratima;
Idicula-Thomas, Susan

Publication type:

Article

CAMP: Collection of sequences and structures of antimicrobial peptides.

Published in:

Nucleic Acids Research, 2014, v. 42, n. D1, p. D1154, doi. 10.1093/nar/gkt1157

By:

Waghu, Faiza Hanif;
Gopi, Lijin;
Barai, Ram Shankar;
Ramteke, Pranay;
Nizami, Bilal;
Idicula-Thomas, Susan

Publication type:

Article

CAMP: a useful resource for research on antimicrobial peptides.

Published in:

Nucleic Acids Research, 2010, v. 38, p. D774, doi. 10.1093/nar/gkp1021

By:

Thomas, Shaini;
Karnik, Shreyas;
Barai, Ram Shankar;
Jayaraman, V. K.;
Idicula-Thomas, Susan

Publication type:

Article

Differential proteomics of circulating extracellular vesicles of placental origin isolated from women with early‐onset preeclampsia reveal aberrant innate immune and hemostasis processes.

Published in:

American Journal of Reproductive Immunology, 2024, v. 91, n. 6, p. 1, doi. 10.1111/aji.13860

By:

Rao, Aishwarya;
Subedi, Rambhadur;
Kundu, Indra;
Idicula‐Thomas, Susan;
Shinde, Uma;
Bansal, Vandana;
Balsarkar, Geetha;
Mayadeo, Niranjan;
Das, Dhanjit Kumar;
Balasinor, Nafisa;
Madan, Taruna

Publication type:

Article

A novel 9-bp insertion detected in steroid 21-hydroxylase gene (CYP21A2): prediction of its structural and functional implications by computational methods.

Published in:

Journal of Biomedical Science, 2009, v. 16, p. 1, doi. 10.1186/1423-0127-16-3

By:

Dubey, Sudhisha;
Idicula-Thomas, Susan;
Anwaruddin, Mohammad;
Saravanan, Chinnaraj;
Varma, R Raveendra;
Maitra, Anurupa

Publication type:

Article

Mitochondrial Oxidative Stress, Dysfunction, and Rare Mitochondrial DNA Variants: Novel Contributors in the Pathophysiology of PCOS.

Published in:

Indian Journal of Medical & Paediatric Oncology, 2024, v. 45, p. S1, doi. 10.1055/s-0044-1788216

By:

Tharayil, Samia Palat;
Gawde, Ulka;
Mukherjee, Srabani;
Patil, Anushree;
Joshi, Beena;
Thomas, Susan Idicula;
Shukla, Pallavi

Publication type:

Article