OpenURL Connection Search

Select item for more details and to access through your institution.

Two newly established and mutually related subfamilies GH13_48 and GH13_49 of the α-amylase family GH13.
Published in:
Applied Microbiology & Biotechnology, 2024, v. 108, n. 1, p. 1, doi. 10.1007/s00253-024-13251-x
By:
- Mareček, Filip;
- Terrapon, Nicolas;
- Janeček, Štefan
Publication type:
Article
PULDB: the expanded database of Polysaccharide Utilization Loci.
Published in:
Nucleic Acids Research, 2018, v. 46, n. D1, p. D677, doi. 10.1093/nar/gkx1022
By:
- Terrapon, Nicolas;
- Lombard, Vincent;
- Drula, Élodie;
- Lapébie, Pascal;
- Al-Masaudi, Saad;
- Gilbert, Harry J;
- Henrissat, Bernard
Publication type:
Article
Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28310-y
By:
- Cabral, Lucelia;
- Persinoti, Gabriela F.;
- Paixão, Douglas A. A.;
- Martins, Marcele P.;
- Morais, Mariana A. B.;
- Chinaglia, Mariana;
- Domingues, Mariane N.;
- Sforca, Mauricio L.;
- Pirolla, Renan A. S.;
- Generoso, Wesley C.;
- Santos, Clelton A.;
- Maciel, Lucas F.;
- Terrapon, Nicolas;
- Lombard, Vincent;
- Henrissat, Bernard;
- Murakami, Mario T.
Publication type:
Article
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.
Published in:
Nature Biotechnology, 2018, v. 36, n. 4, p. 359, doi. 10.1038/nbt.4110
By:
- Seshadri, Rekha;
- Leahy, Sinead C;
- Attwood, Graeme T;
- Teh, Koon Hoong;
- Lambie, Suzanne C;
- Cookson, Adrian L;
- Eloe-Fadrosh, Emiley A;
- Pavlopoulos, Georgios A;
- Hadjithomas, Michalis;
- Varghese, Neha J;
- Paez-Espino, David;
- Perry, Rechelle;
- Henderson, Gemma;
- Creevey, Christopher J;
- Terrapon, Nicolas;
- Lapebie, Pascal;
- Drula, Elodie;
- Lombard, Vincent;
- Rubin, Edward;
- Kyrpides, Nikos C
Publication type:
Article
A fibrolytic potential in the human ileum mucosal microbiota revealed by functional metagenomic.
Published in:
Scientific Reports, 2017, p. 40248, doi. 10.1038/srep40248
By:
- Patrascu, Orlane;
- Béguet-Crespel, Fabienne;
- Marinelli, Ludovica;
- Le Chatelier, Emmanuelle;
- Abraham, Anne-Laure;
- Leclerc, Marion;
- Klopp, Christophe;
- Terrapon, Nicolas;
- Henrissat, Bernard;
- Blottière, Hervé M.;
- Doré, Joël;
- Béra-Maillet, Christel
Publication type:
Article
A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment.
Published in:
GigaScience, 2020, v. 9, n. 6, p. 1, doi. 10.1093/gigascience/giaa057
By:
- Li, Junhua;
- Zhong, Huanzi;
- Ramayo-Caldas, Yuliaxis;
- Terrapon, Nicolas;
- Lombard, Vincent;
- Potocki-Veronese, Gabrielle;
- Estellé, Jordi;
- Popova, Milka;
- Yang, Ziyi;
- Zhang, Hui;
- Li, Fang;
- Tang, Shanmei;
- Yang, Fangming;
- Chen, Weineng;
- Chen, Bing;
- Li, Jiyang;
- Guo, Jing;
- Martin, Cécile;
- Maguin, Emmanuelle;
- Xu, Xun
Publication type:
Article
Identification of Divergent Protein Domains by Combining HMM-HMM Comparisons and Co-Occurrence Detection.
Published in:
PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0095275
By:
- Ghouila, Amel;
- Florent, Isabelle;
- Guerfali, Fatma Zahra;
- Terrapon, Nicolas;
- Laouini, Dhafer;
- Yahia, Sadok Ben;
- Gascuel, Olivier;
- Bréhélin, Laurent
Publication type:
Article
Xylan degradation by the human gut Bacteroides xylanisolvens XB1A<sup>T</sup> involves two distinct gene clusters that are linked at the transcriptional level.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2680-8
By:
- Despres, Jordane;
- Forano, Evelyne;
- Lepercq, Pascale;
- Comtet-Marre, Sophie;
- Jubelin, Gregory;
- Chambon, Christophe;
- Yeoman, Carl J.;
- Berg Miller, Margaret E.;
- Fields, Christopher J.;
- Martens, Eric;
- Terrapon, Nicolas;
- Henrissat, Bernard;
- White, Bryan A.;
- Mosoni, Pascale
Publication type:
Article
Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2472-1
By:
- Despres, Jordane;
- Forano, Evelyne;
- Lepercq, Pascale;
- Comtet-Marre, Sophie;
- Jubelin, Grégory;
- Yeoman, Carl J.;
- Berg Miller, Margret E.;
- Fields, Christopher J.;
- Terrapon, Nicolas;
- Le Bourvellec, Carine;
- Renard, Catherine M. G. C.;
- Henrissat, Bernard;
- White, Bryan A.;
- Mosoni, Pascale
Publication type:
Article
Bioinformatic Analysis of Lytic Polysaccharide Monooxygenases Reveals the Pan-Families Occurrence of Intrinsically Disordered C-Terminal Extensions.
Published in:
Biomolecules (2218-273X), 2021, v. 11, n. 11, p. 1632, doi. 10.3390/biom11111632
By:
- Tamburrini, Ketty C.;
- Terrapon, Nicolas;
- Lombard, Vincent;
- Bissaro, Bastien;
- Longhi, Sonia;
- Berrin, Jean-Guy
Publication type:
Article
Bacteroidetes use thousands of enzyme combinations to break down glycans.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10068-5
By:
- Lapébie, Pascal;
- Lombard, Vincent;
- Drula, Elodie;
- Terrapon, Nicolas;
- Henrissat, Bernard
Publication type:
Article
Candidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history.
Published in:
BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10811-3
By:
- Mazéas, Lisa;
- Bouguerba-Collin, Ahlem;
- Cock, J. Mark;
- Denoeud, France;
- Godfroy, Olivier;
- Brillet-Guéguen, Loraine;
- Barbeyron, Tristan;
- Lipinska, Agnieszka P.;
- Delage, Ludovic;
- Corre, Erwan;
- Drula, Elodie;
- Henrissat, Bernard;
- Czjzek, Mirjam;
- Terrapon, Nicolas;
- Hervé, Cécile
Publication type:
Article
Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum.
Published in:
BMC Bioinformatics, 2012, v. 13, n. 1, p. 67, doi. 10.1186/1471-2105-13-67
By:
- Terrapon, Nicolas;
- Gascuel, Olivier;
- Maréchal, Éric;
- Bréhélin, Laurent
Publication type:
Article
Elizabethkingia anophelis MSU001 Isolated from Anopheles stephensi : Molecular Characterization and Comparative Genome Analysis.
Published in:
Microorganisms, 2024, v. 12, n. 6, p. 1079, doi. 10.3390/microorganisms12061079
By:
- Chen, Shicheng;
- Pham, Steven;
- Terrapon, Nicolas;
- Blom, Jochen;
- Walker, Edward D.
Publication type:
Article
Isolation and Characterization of Extracellular Vesicles Secreted In Vitro by Porcine Microbiota.
Published in:
Microorganisms, 2020, v. 8, n. 7, p. 983, doi. 10.3390/microorganisms8070983
By:
- Lagos, Leidy;
- Leanti La Rosa, Sabina;
- Ø. Arntzen, Magnus;
- Ånestad, Ragnhild;
- Terrapon, Nicolas;
- Gaby, John Christian;
- Westereng, Bjørge
Publication type:
Article
Comparative genomic analyses reveal diverse virulence factors and antimicrobial resistance mechanisms in clinical Elizabethkingia meningoseptica strains.
Published in:
PLoS ONE, 2019, v. 14, n. 10, p. 1, doi. 10.1371/journal.pone.0222648
By:
- Chen, Shicheng;
- Soehnlen, Marty;
- Blom, Jochen;
- Terrapon, Nicolas;
- Henrissat, Bernard;
- Walker, Edward D.
Publication type:
Article
BoGH13A<sub>Sus</sub> from Bacteroides ovatus represents a novel α-amylase used for Bacteroides starch breakdown in the human gut.
Published in:
Cellular & Molecular Life Sciences, 2023, v. 80, n. 8, p. 1, doi. 10.1007/s00018-023-04812-w
By:
- Brown, Haley A.;
- DeVeaux, Anna L.;
- Juliano, Brock R.;
- Photenhauer, Amanda L.;
- Boulinguiez, Matthieu;
- Bornschein, Russell E.;
- Wawrzak, Zdzislaw;
- Ruotolo, Brandon T.;
- Terrapon, Nicolas;
- Koropatkin, Nicole M.
Publication type:
Article
Corrigendum: Glycan complexity dictates microbial resource allocation in the large intestine.
Published in:
Nature Communications, 2016, v. 7, n. 2, p. 10705, doi. 10.1038/ncomms10705
By:
- Rogowski, Artur;
- Briggs, Jonathon A.;
- Mortimer, Jennifer C.;
- Tryfona, Theodora;
- Terrapon, Nicolas;
- Lowe, Elisabeth C.;
- Baslé, Arnaud;
- Morland, Carl;
- Day, Alison M.;
- Zheng, Hongjun;
- Rogers, Theresa E.;
- Thompson, Paul;
- Hawkins, Alastair R.;
- Yadav, Madhav P.;
- Henrissat, Bernard;
- Martens, Eric C.;
- Dupree, Paul;
- Gilbert, Harry J.;
- Bolam, David N.
Publication type:
Article
Glycan complexity dictates microbial resource allocation in the large intestine.
Published in:
Nature Communications, 2015, v. 6, n. 6, p. 7481, doi. 10.1038/ncomms8481
By:
- Rogowski, Artur;
- Briggs, Jonathon A.;
- Mortimer, Jennifer C.;
- Tryfona, Theodora;
- Terrapon, Nicolas;
- Lowe, Elisabeth C.;
- Baslé, Arnaud;
- Morland, Carl;
- Day, Alison M.;
- Zheng, Hongjun;
- Rogers, Theresa E.;
- Thompson, Paul;
- Hawkins, Alastair R.;
- Yadav, Madhav P.;
- Henrissat, Bernard;
- Martens, Eric C.;
- Dupree, Paul;
- Gilbert, Harry J.;
- Bolam, David N.
Publication type:
Article
Molecular traces of alternative social organization in a termite genome.
Published in:
Nature Communications, 2014, v. 5, n. 5, p. 3636, doi. 10.1038/ncomms4636
By:
- Terrapon, Nicolas;
- Li, Cai;
- Robertson, Hugh M.;
- Ji, Lu;
- Meng, Xuehong;
- Booth, Warren;
- Chen, Zhensheng;
- Childers, Christopher P.;
- Glastad, Karl M.;
- Gokhale, Kaustubh;
- Gowin, Johannes;
- Gronenberg, Wulfila;
- Hermansen, Russell A.;
- Hu, Haofu;
- Hunt, Brendan G.;
- Huylmans, Ann Kathrin;
- Khalil, Sayed M. S.;
- Mitchell, Robert D.;
- Munoz-Torres, Monica C.;
- Mustard, Julie A.
Publication type:
Article
Glycoside hydrolase subfamily GH5_57 features a highly redesigned catalytic interface to process complex hetero‐β‐mannans.
Published in:
Acta Crystallographica: Section D, Structural Biology, 2022, v. 78, n. 11, p. 1358, doi. 10.1107/S2059798322009561
By:
- Martins, Marcele P.;
- Morais, Mariana A. B.;
- Persinoti, Gabriela F.;
- Galinari, Rafael H.;
- Yu, Li;
- Yoshimi, Yoshihisa;
- Passos Nunes, Fernanda B.;
- Lima, Tatiani B.;
- Barbieri, Shayla F.;
- Silveira, Joana L. M.;
- Lombard, Vincent;
- Terrapon, Nicolas;
- Dupree, Paul;
- Henrissat, Bernard;
- Murakami, Mário T.
Publication type:
Article
Comparative Metagenomics of Cellulose- and Poplar Hydrolysate-Degrading Microcosms from Gut Microflora of the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus) after Long-Term Enrichment.
Published in:
Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.02504
By:
- Wong, Mabel T.;
- Weijun Wang;
- Couturier, Marie;
- Razeq, Fakhria M.;
- Lombard, Vincent;
- Lapebie, Pascal;
- Edwards, Elizabeth A.;
- Terrapon, Nicolas;
- Henrissat, Bernard;
- Master, Emma R.
Publication type:
Article
An objective criterion to evaluate sequence-similarity networks helps in dividing the protein family sequence space.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010881
By:
- Hornung, Bastian Volker Helmut;
- Terrapon, Nicolas
Publication type:
Article
carbohydrate-active enzyme database: functions and literature.
Published in:
Nucleic Acids Research, 2022, v. 50, n. D1, p. D571, doi. 10.1093/nar/gkab1045
By:
- Drula, Elodie;
- Garron, Marie-Line;
- Dogan, Suzan;
- Lombard, Vincent;
- Henrissat, Bernard;
- Terrapon, Nicolas
Publication type:
Article
Polysaccharide utilization loci-driven enzyme discovery reveals BD-FAE: a bifunctional feruloyl and acetyl xylan esterase active on complex natural xylans.
Published in:
Biotechnology for Biofuels, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13068-021-01976-0
By:
- Hameleers, Lisanne;
- Penttinen, Leena;
- Ikonen, Martina;
- Jaillot, Léa;
- Fauré, Régis;
- Terrapon, Nicolas;
- Deuss, Peter J.;
- Hakulinen, Nina;
- Master, Emma R.;
- Jurak, Edita
Publication type:
Article
Functional exploration of the glycoside hydrolase family GH113.
Published in:
PLoS ONE, 2022, v. 17, n. 4, p. 1, doi. 10.1371/journal.pone.0267509
By:
- Couturier, Marie;
- Touvrey-Loiodice, Mélanie;
- Terrapon, Nicolas;
- Drula, Elodie;
- Buon, Laurine;
- Chirat, Christine;
- Henrissat, Bernard;
- Helbert, William
Publication type:
Article
A microbiome-directed therapeutic food for children recovering from severe acute malnutrition.
Published in:
Science Translational Medicine, 2024, v. 16, n. 767, p. 1, doi. 10.1126/scitranslmed.adn2366
By:
- Hartman, Steven J.;
- Hibberd, Matthew C.;
- Mostafa, Ishita;
- Naila, Nurun N.;
- Islam, Md. Munirul;
- Zaman, Mahabub Uz;
- Huq, Sayeeda;
- Mahfuz, Mustafa;
- Islam, Md. Tazul;
- Mukherji, Kallol;
- Moghaddam, Vaha Akbary;
- Chen, Robert Y.;
- Province, Michael A.;
- Webber, Daniel M.;
- Henrissat, Suzanne;
- Henrissat, Bernard;
- Terrapon, Nicolas;
- Rodionov, Dmitry A.;
- Osterman, Andrei L.;
- Barratt, Michael J.
Publication type:
Article
Genome Features of Asaia sp. W12 Isolated from the Mosquito Anopheles stephensi Reveal Symbiotic Traits.
Published in:
Genes, 2021, v. 12, n. 5, p. 752, doi. 10.3390/genes12050752
By:
- Chen, Shicheng;
- Yu, Ting;
- Terrapon, Nicolas;
- Henrissat, Bernard;
- Walker, Edward D.;
- Wing, Helen J.
Publication type:
Article
Automatic prediction of polysaccharide utilization loci in Bacteroidetes species.
Published in:
Bioinformatics, 2015, v. 31, n. 5, p. 647, doi. 10.1093/bioinformatics/btu716
By:
- Terrapon, Nicolas;
- Lombard, Vincent;
- Gilbert, Harry J.;
- Henrissat, Bernard
Publication type:
Article
DoMosaics: software for domain arrangement visualization and domain-centric analysis of proteins.
Published in:
Bioinformatics, 2014, v. 30, n. 2, p. 282, doi. 10.1093/bioinformatics/btt640
By:
- Moore, Andrew D.;
- Held, Andreas;
- Terrapon, Nicolas;
- Weiner, January;
- Bornberg-Bauer, Erich
Publication type:
Article
Rapid similarity search of proteins using alignments of domain arrangements.
Published in:
Bioinformatics, 2014, v. 30, n. 2, p. 274, doi. 10.1093/bioinformatics/btt379
By:
- Terrapon, Nicolas;
- Weiner, January;
- Grath, Sonja;
- Moore, Andrew D.;
- Bornberg-Bauer, Erich
Publication type:
Article
Detection of new protein domains using co-occurrence: application to Plasmodium falciparum.
Published in:
Bioinformatics, 2009, v. 25, n. 23, p. 3077, doi. 10.1093/bioinformatics/btp560
By:
- Terrapon, Nicolas;
- Gascuel, Olivier;
- Maréchal, Éric;
- Bréehélin, Laurent
Publication type:
Article
Investigating host-microbiome interactions by droplet based microfluidics.
Published in:
Microbiome, 2020, v. 8, n. 1, p. N.PAG, doi. 10.1186/s40168-020-00911-z
By:
- Tauzin, Alexandra S.;
- Pereira, Mariana Rangel;
- Van Vliet, Liisa D.;
- Colin, Pierre-Yves;
- Laville, Elisabeth;
- Esque, Jeremy;
- Laguerre, Sandrine;
- Henrissat, Bernard;
- Terrapon, Nicolas;
- Lombard, Vincent;
- Leclerc, Marion;
- Doré, Joël;
- Hollfelder, Florian;
- Potocki-Veronese, Gabrielle
Publication type:
Article
Unveiling the role of novel carbohydrate‐binding modules in laminarin interaction of multimodular proteins from marine Bacteroidota during phytoplankton blooms.
Published in:
Environmental Microbiology, 2024, v. 26, n. 5, p. 1, doi. 10.1111/1462-2920.16624
By:
- Zühlke, Marie‐Katherin;
- Ficko‐Blean, Elizabeth;
- Bartosik, Daniel;
- Terrapon, Nicolas;
- Jeudy, Alexandra;
- Jam, Murielle;
- Wang, Fengqing;
- Welsch, Norma;
- Dürwald, Alexandra;
- Martin, Laura Torres;
- Larocque, Robert;
- Jouanneau, Diane;
- Eisenack, Tom;
- Thomas, François;
- Trautwein‐Schult, Anke;
- Teeling, Hanno;
- Becher, Dörte;
- Schweder, Thomas;
- Czjzek, Mirjam
Publication type:
Article
Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-19585-0
By:
- Michalak, Leszek;
- Gaby, John Christian;
- Lagos, Leidy;
- La Rosa, Sabina Leanti;
- Hvidsten, Torgeir R.;
- Tétard-Jones, Catherine;
- Willats, William G. T.;
- Terrapon, Nicolas;
- Lombard, Vincent;
- Henrissat, Bernard;
- Dröge, Johannes;
- Arntzen, Magnus Øverlie;
- Hagen, Live Heldal;
- Øverland, Margareth;
- Pope, Phillip B.;
- Westereng, Bjørge
Publication type:
Article
Author Correction: Metabolism of multiple glycosaminoglycans by Bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus.
Published in:
2020
By:
- Ndeh, Didier;
- Baslé, Arnaud;
- Strahl, Henrik;
- Yates, Edwin A.;
- McClurgg, Urszula L.;
- Henrissat, Bernard;
- Terrapon, Nicolas;
- Cartmell, Alan
Publication type:
Correction Notice
Metabolism of multiple glycosaminoglycans by Bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-14509-4
By:
- Ndeh, Didier;
- Baslé, Arnaud;
- Strahl, Henrik;
- Yates, Edwin A.;
- McClurgg, Urszula L.;
- Henrissat, Bernard;
- Terrapon, Nicolas;
- Cartmell, Alan
Publication type:
Article

Found: 37