Works by Tegnér, Jesper

Results: 69

FRONTO-PARIETAL CONNECTION ASYMMETRY REGULATES WORKING MEMORY DISTRACTIBILITY.

Published in:

Journal of Integrative Neuroscience, 2007, v. 6, n. 4, p. 567, doi. 10.1142/S0219635207001702

By:

EDIN, FREDRIK;
KLINGBERG, TORKEL;
STÖDBERG, TOMMY;
TEGNÉR, JESPER

Publication type:

Article

Approximations of algorithmic and structural complexity validate cognitive-behavioral experimental results.

Published in:

Frontiers in Computational Neuroscience, 2023, v. 16, p. 1, doi. 10.3389/fncom.2022.956074

By:

Zenil, Hector;
Marshall, James A. R.;
Tegnér, Jesper

Publication type:

Article

Implementation of the CDC translational informatics platform - from genetic variants to the national Swedish Rheumatology Quality Register.

Published in:

Journal of Translational Medicine, 2013, v. 11, n. 1, p. 1, doi. 10.1186/1479-5876-11-85

By:

Abugessaisa, Imad;
Gomez-Cabrero, David;
Snir, Omri;
Lindblad, Staffan;
Klareskog, Lars;
Malmström, Vivianne;
Tegnér, Jesper

Publication type:

Article

Implementation of the CDC translational informatics platform--from genetic variants to the national Swedish Rheumatology Quality Register.

Published in:

2013

By:

Abugessaisa, Imad;
Gomez-Cabrero, David;
Snir, Omri;
Lindblad, Staffan;
Klareskog, Lars;
Malmström, Vivianne;
Tegnér, Jesper

Publication type:

journal article

Epigenetic alterations in autoimmune disease.

Published in:

2011

By:

Ballestar, Esteban;
Javierre, Biola M.;
de la Rica, Lorenzo;
Gómez-Cabrero, David;
Tegnér, Jesper;
Gomez-Vaquero, Carmen;
Narvaez, Javier;
Hernando, Henar;
Rodriguez, Virginia C;
Vento, Roser;
Ciudad, Laura;
Rodriguez-Ubreva, Javier

Publication type:

Abstract

Dynamics and heterogeneity of brain damage in multiple sclerosis.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005757

By:

Kotelnikova, Ekaterina;
Kiani, Narsis A.;
Abad, Elena;
Martinez-Lapiscina, Elena H.;
Andorra, Magi;
Zubizarreta, Irati;
Pulido-Valdeolivas, Irene;
Pertsovskaya, Inna;
Alexopoulos, Leonidas G.;
Olsson, Tomas;
Martin, Roland;
Paul, Friedemann;
Tegnér, Jesper;
Garcia-Ojalvo, Jordi;
Villoslada, Pablo

Publication type:

Article

Normalization of circulating microRNA expression data obtained by quantitative real-time RT-PCR.

Published in:

Briefings in Bioinformatics, 2016, v. 17, n. 2, p. 204, doi. 10.1093/bib/bbv056

By:

Marabita, Francesco;
Candia, Paola de;
Torri, Anna;
Tegnér, Jesper;
Abrignani, Sergio;
Rossi, Riccardo L.

Publication type:

Article

In Search of 'Omics'-Based Biomarkers to Predict Risk of Frailty and Its Consequences in Older Individuals: The FRAILOMIC Initiative.

Published in:

2016

By:

Erusalimsky, Jorge D.;
Grillari, Johannes;
Grune, Tilman;
Jansen-Duerr, Pidder;
Lippi, Giuseppe;
Sinclair, alan J.;
Tegnér, Jesper;
Viña, Jose;
Durrance-Bagale, anna;
Miñambres, Rebeca;
Viegas, Marcelo;
Rodríguez-Mañas, Leocadio

Publication type:

journal article

Neuronal methylome reveals CREB-associated neuro-axonal impairment in multiple sclerosis.

Published in:

Clinical Epigenetics, 2019, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13148-019-0678-1

By:

Kular, Lara;
Needhamsen, Maria;
Adzemovic, Milena Z.;
Kramarova, Tatiana;
Gomez-Cabrero, David;
Ewing, Ewoud;
Piket, Eliane;
Tegnér, Jesper;
Beck, Stephan;
Piehl, Fredrik;
Brundin, Lou;
Jagodic, Maja

Publication type:

Article

Laboratory biomarkers and frailty: presentation of the FRAILOMIC initiative.

Published in:

Clinical Chemistry & Laboratory Medicine, 2015, v. 53, n. 10, p. e253, doi. 10.1515/cclm-2015-0147

By:

Lippi, Giuseppe;
Jansen-Duerr, Pidder;
Viña, Jose;
Durrance-Bagale, Anna;
Abugessaisa, Imad;
Gomez-Cabrero, David;
Tegnér, Jesper;
Grillari, Johannes;
Erusalimsky, Jorge;
Sinclair, Alan;
Rodriguez-Manãs, Leocadio

Publication type:

Article

Data integration in the era of omics: current and future challenges.

Published in:

BMC Systems Biology, 2014, v. 8, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-8-S2-I1

By:

Gomez-Cabrero, David;
Abugessaisa, Imad;
Maier, Dieter;
Teschendorff, Andrew;
Merkenschlager, Matthias;
Gisel, Andreas;
Ballestar, Esteban;
Bongcam-Rudloff, Erik;
Conesa, Ana;
Tegnér, Jesper

Publication type:

Article

Computational disease modeling - fact or fiction?

Published in:

BMC Systems Biology, 2009, v. 3, p. 1, doi. 10.1186/1752-0509-3-56

By:

Tegnér, Jesper N.;
Compte, Albert;
Auffray, Charles;
An, Gary;
Cedersund, Gunnar;
Clermont, Gilles;
Gutkin, Boris;
Oltvai, Zoltán N.;
Stephan, Klaas Enno;
Thomas, Randy;
Villoslada, Pablo

Publication type:

Article

Chronic Obstructive Pulmonary Disease heterogeneity: challenges for health risk assessment, stratification and management.

Published in:

2014

By:

Roca, Josep;
Vargas, Claudia;
Cano, Isaac;
Selivanov, Vitaly;
Barreiro, Esther;
Maier, Dieter;
Falciani, Francesco;
Wagner, Peter;
Cascante, Marta;
Garcia-Aymerich, Judith;
Kalko, Susana;
De Mas, Igor;
Tegnér, Jesper;
Escarrabill, Joan;
Agustí, Alvar;
Gomez-Cabrero, David;
Synergy-COPD consortium

Publication type:

Journal Article

Synergy-COPD: a systems approach for understanding and managing chronic diseases.

Published in:

2014

By:

Gomez-Cabrero, David;
Lluch-Ariet, Magi;
Tegnér, Jesper;
Cascante, Marta;
Miralles, Felip;
Roca, Josep;
Synergy-COPD consortium

Publication type:

Journal Article

Predictive medicine: outcomes, challenges and opportunities in the Synergy-COPD project.

Published in:

2014

By:

Miralles, Felip;
Gomez-Cabrero, David;
Lluch-Ariet, Magí;
Tegnér, Jesper;
Cascante, Marta;
Roca, Josep;
Synergy-COPD consortium

Publication type:

Journal Article

Biomedical research in a Digital Health Framework.

Published in:

2014

By:

Cano, Isaac;
Lluch-Ariet, Magí;
Gomez-Cabrero, David;
Maier, Dieter;
Kalko, Susana;
Cascante, Marta;
Tegnér, Jesper;
Miralles, Felip;
Herrera, Diego;
Roca, Josep;
Synergy-COPD consortium

Publication type:

Journal Article

Systems Medicine: from molecular features and models to the clinic in COPD.

Published in:

2014

By:

Gomez-Cabrero, David;
Menche, Jörg;
Cano, Isaac;
Abugessaisa, Imad;
Huertas-Migueláñez, Mercedes;
Tenyi, Akos;
de Mas, Igor;
Kiani, Narsis A;
Marabita, Francesco;
Falciani, Francesco;
Burrowes, Kelly;
Maier, Dieter;
Wagner, Peter;
Selivanov, Vitaly;
Cascante, Marta;
Roca, Josep;
Barabási, Albert-László;
Tegnér, Jesper

Publication type:

Journal Article

Electrotonic Signals along Intracellular Membranes May Interconnect Dendritic Spines and Nucleus.

Published in:

PLoS Computational Biology, 2008, v. 4, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000036

By:

Shemer, Isaac;
Brinne, Björn;
Tegnér, Jesper;
Grillner, Sten

Publication type:

Article

An Algorithm for Reading Dependencies from the Minimal Undirected Independence Map of a Graphoid that Satisfies Weak Transitivity.

Published in:

Journal of Machine Learning Research, 2009, v. 10, n. 5, p. 1071

By:

Peña, Jose M.;
Nilsson, Roland;
Björkegren, Johan;
Tegnér, Jesper

Publication type:

Article

Consistent Feature Selection for Pattern Recognition in Polynomial Time.

Published in:

Journal of Machine Learning Research, 2007, v. 8, n. 3, p. 589

By:

Nilson, Roland;
Peña, José M.;
Bjökegren, Johan;
Tegnér, Jesper

Publication type:

Article

TcellSubC: An Atlas of the Subcellular Proteome of Human T Cells.

Published in:

Frontiers in Immunology, 2019, v. 10, p. 1, doi. 10.3389/fimmu.2019.02708

By:

Joshi, Rubin Narayan;
Stadler, Charlotte;
Lehmann, Robert;
Lehtiö, Janne;
Tegnér, Jesper;
Schmidt, Angelika;
Vesterlund, Mattias

Publication type:

Article

Neuronal firing rates account for distractor effects on mnemonic accuracy in a visuo-spatial working memory task.

Published in:

Biological Cybernetics, 2007, v. 96, n. 4, p. 407, doi. 10.1007/s00422-006-0139-8

By:

Macoveanu, Julian;
Klingberg, Torkel;
Tegnér, Jesper

Publication type:

Article

Impact of genetic risk loci for multiple sclerosis on expression of proximal genes in patients.

Published in:

Human Molecular Genetics, 2018, v. 27, n. 5, p. 912, doi. 10.1093/hmg/ddy001

By:

James, Tojo;
Lindén, Magdalena;
Morikawa, Hiromasa;
Fernandes, Sunjay Jude;
Ruhrmann, Sabrina;
Huss, Mikael;
Brandi, Maya;
Piehl, Fredrik;
Jagodic, Maja;
Tegnér, Jesper;
Khademi, Mohsen;
Olsson, Tomas;
Gomez-Cabrero, David;
Kockum, Ingrid

Publication type:

Article

Non-HLA genes PTPN22, CDK6 and PADI4 are associated with specific autoantibodies in HLA-defined subgroups of rheumatoid arthritis.

Published in:

Arthritis Research & Therapy, 2014, v. 16, n. 5, p. 2, doi. 10.1186/s13075-014-0414-3

By:

Snir, Omri;
Gomez-Cabrero, David;
Montes, Ariana;
Perez-Pampin, Eva;
Gómez-Reino, Juan J.;
Seddighzadeh, Maria;
Klich, Katharina U.;
Israelsson, Lena;
Ding, Bo;
Catrina, Anca I.;
Holmdahl, Rikard;
Alfredsson, Lars;
Klareskog, Lars;
Tegnér, Jesper;
Gonzalez, Antonio;
Malmström, Vivianne;
Padyukov, Leonid

Publication type:

Article

Comparative Analysis of Protocols to Induce Human CD4+Foxp3+ Regulatory T Cells by Combinations of IL-2, TGF-beta, Retinoic Acid, Rapamycin and Butyrate.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0148474

By:

Schmidt, Angelika;
Eriksson, Matilda;
Shang, Ming-Mei;
Weyd, Heiko;
Tegnér, Jesper

Publication type:

Article

The Thermodynamics of Network Coding, and an Algorithmic Refinement of the Principle of Maximum Entropy †.

Published in:

Entropy, 2019, v. 21, n. 6, p. 560, doi. 10.3390/e21060560

By:

Zenil, Hector;
Kiani, Narsis A.;
Tegnér, Jesper

Publication type:

Article

A Decomposition Method for Global Evaluation of Shannon Entropy and Local Estimations of Algorithmic Complexity.

Published in:

Entropy, 2018, v. 20, n. 8, p. 605, doi. 10.3390/e20080605

By:

Zenil, Hector;
Hernández-Orozco, Santiago;
Kiani, Narsis A.;
Soler-Toscano, Fernando;
Rueda-Toicen, Antonio;
Tegnér, Jesper

Publication type:

Article

A Review of Graph and Network Complexity from an Algorithmic Information Perspective.

Published in:

Entropy, 2018, v. 20, n. 8, p. 551, doi. 10.3390/e20080551

By:

Zenil, Hector;
Kiani, Narsis A.;
Tegnér, Jesper

Publication type:

Article

Symmetry and Correspondence of Algorithmic Complexity over Geometric, Spatial and Topological Representations †.

Published in:

Entropy, 2018, v. 20, n. 7, p. 534, doi. 10.3390/e20070534

By:

Zenil, Hector;
Kiani, Narsis A.;
Tegnér, Jesper

Publication type:

Article

Deep neural network prediction of genome-wide transcriptome signatures – beyond the Black-box.

Published in:

NPJ Systems Biology & Applications, 2022, v. 8, n. 1, p. 1, doi. 10.1038/s41540-022-00218-9

By:

Magnusson, Rasmus;
Tegnér, Jesper N.;
Gustafsson, Mika

Publication type:

Article

Algorithmic Complexity and Reprogrammability of Chemical Structure Networks.

Published in:

Parallel Processing Letters, 2018, v. 28, n. 1, p. -1, doi. 10.1142/S0129626418500056

By:

Zenil, Hector;
Kiani, Narsis A.;
Shang, Ming-mei;
Tegnér, Jesper

Publication type:

Article

Gene Regulatory Network of Human GM-CSF-Secreting T Helper Cells.

Published in:

2021

By:

Éliás, Szabolcs;
Schmidt, Angelika;
Gomez-Cabrero, David;
Tegnér, Jesper

Publication type:

journal article

Quantifying loss of information in network-based dimensionality reduction techniques.

Published in:

Journal of Complex Networks, 2016, v. 4, n. 3, p. 342, doi. 10.1093/comnet/cnv025

By:

ZENIL, HECTOR;
KIANI, NARSIS A.;
TEGNÉR, JESPER

Publication type:

Article

Exhaustion of CD4+ T-cells mediated by the Kynurenine Pathway in Melanoma.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-48635-x

By:

Rad Pour, Soudabeh;
Morikawa, Hiromasa;
Kiani, Narsis A.;
Yang, Muyi;
Azimi, Alireza;
Shafi, Gowhar;
Shang, Mingmei;
Baumgartner, Roland;
Ketelhuth, Daniel F. J.;
Kamleh, Muhammad Anas;
Wheelock, Craig E.;
Lundqvist, Andreas;
Hansson, Johan;
Tegnér, Jesper

Publication type:

Article

Non-parametric combination analysis of multiple data types enables detection of novel regulatory mechanisms in T cells of multiple sclerosis patients.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-48493-7

By:

Fernandes, Sunjay Jude;
Morikawa, Hiromasa;
Ewing, Ewoud;
Ruhrmann, Sabrina;
Joshi, Rubin Narayan;
Lagani, Vincenzo;
Karathanasis, Nestoras;
Khademi, Mohsen;
Planell, Nuria;
Schmidt, Angelika;
Tsamardinos, Ioannis;
Olsson, Tomas;
Piehl, Fredrik;
Kockum, Ingrid;
Jagodic, Maja;
Tegnér, Jesper;
Gomez-Cabrero, David

Publication type:

Article

High-specificity bioinformatics framework for epigenomic profiling of discordant twins reveals specific and shared markers for ACPA and ACPA-positive rheumatoid arthritis.

Published in:

Genome Medicine, 2016, v. 8, p. 1, doi. 10.1186/s13073-016-0374-0

By:

Gomez-Cabrero, David;
Almgren, Malin;
Sjöholm, Louise K.;
Hensvold, Aase H.;
Ringh, Mikael V.;
Tryggvadottir, Rakel;
Kere, Juha;
Scheynius, Annika;
Acevedo, Nathalie;
Reinius, Lovisa;
Taub, Margaret A.;
Montano, Carolina;
Aryee, Martin J.;
Feinberg, Jason I.;
Feinberg, Andrew P.;
Tegnér, Jesper;
Klareskog, Lars;
Catrina, Anca I.;
Ekström, Tomas J.

Publication type:

Article

Human macrophages induce CD4+Foxp3+ regulatory T cells via binding and re-release of TGF-β.

Published in:

Immunology & Cell Biology, 2016, v. 94, n. 8, p. 747, doi. 10.1038/icb.2016.34

By:

Schmidt, Angelika;
Zhang, Xing‐Mei;
Joshi, Rubin N;
Iqbal, Shasina;
Wahlund, Casper;
Gabrielsson, Susanne;
Harris, Robert A;
Tegnér, Jesper

Publication type:

Article

Bioinformatics Mining and Modeling Methods for the Identification of Disease Mechanisms in Neurodegenerative Disorders.

Published in:

International Journal of Molecular Sciences, 2015, v. 16, n. 12, p. 29179, doi. 10.3390/ijms161226148

By:

Hofmann-Apitius, Martin;
Ball, Gordon;
Gebel, Stephan;
Bagewadi, Shweta;
Bono, Bernard de;
Schneider, Reinhard;
Page, Matt;
Kodamullil, Alpha Tom;
Younesi, Erfan;
Ebeling, Christian;
Tegnér, Jesper;
Canard, Luc

Publication type:

Article

On reliable discovery of molecular signatures.

Published in:

BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-38

By:

Nilsson, Roland;
Björkegren, Johan;
Tegnér, Jesper

Publication type:

Article

Reverse Engineering of Gene Networks with LASSO and Nonlinear Basis Functions.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 265, doi. 10.1111/j.1749-6632.2008.03764.x

By:

Gustafsson, Mika;
Hörnquist, Michael;
Lundström, Jesper;
Björkegren, Johan;
Tegnér, Jesper

Publication type:

Article

DeepViral: prediction of novel virus–host interactions from protein sequences and infectious disease phenotypes.

Published in:

Bioinformatics, 2021, v. 37, n. 17, p. 2722, doi. 10.1093/bioinformatics/btab147

By:

Liu-Wei, Wang;
Kafkas, Şenay;
Chen, Jun;
Dimonaco, Nicholas J.;
Tegnér, Jesper;
Hoehndorf, Robert

Publication type:

Article

HiDi: an efficient reverse engineering schema for large-scale dynamic regulatory network reconstruction using adaptive differentiation.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3964, doi. 10.1093/bioinformatics/btx501

By:

Yue Deng;
Zenil, Hector;
Tegnér, Jesper;
Kiani, Narsis A.

Publication type:

Article

Stronger Synaptic Connectivity as a Mechanism behind Development of Working Memory--related Brain Activity during Childhood.

Published in:

Journal of Cognitive Neuroscience, 2007, v. 19, n. 5, p. 750, doi. 10.1162/jocn.2007.19.5.750

By:

Edin, Fredrik;
Macoveanu, Julian;
Olesen, Pernille;
Tegnér, Jesper;
Klingberg, Torkel

Publication type:

Article

Immunometabolic Network Interactions of the Kynurenine Pathway in Cutaneous Malignant Melanoma.

Published in:

Frontiers in Oncology, 2020, v. 10, p. 1, doi. 10.3389/fonc.2020.00051

By:

Rad Pour, Soudabeh;
Morikawa, Hiromasa;
Kiani, Narsis A.;
Gomez-Cabrero, David;
Hayes, Alistair;
Zheng, Xiaozhong;
Pernemalm, Maria;
Lehtiö, Janne;
Mole, Damian J.;
Hansson, Johan;
Eriksson, Hanna;
Tegnér, Jesper

Publication type:

Article

Phosphoproteomics reveals regulatory T cell-Mediated DeF6 Dephosphorylation That affects cytokine expression in human conventional T cells.

Published in:

Frontiers in Immunology, 2017, p. 1, doi. 10.3389/fimmu.2017.01163

By:

Joshi, Rubin N.;
Binai, Nadine A.;
Marabita, Francesco;
Zhenhua Sui;
Altman, Amnon;
Heck, Albert J. R.;
Tegnér, Jesper;
Schmidt, Angelika

Publication type:

Article

TGF-β Affects the Differentiation of Human GM-CSF+ CD4+ T Cells in an Activation- and Sodium-Dependent Manner.

Published in:

Frontiers in Immunology, 2016, v. 7, p. 1, doi. 10.3389/fimmu.2016.00603

By:

Éliás, Szabolcs;
Schmidt, Angelika;
Kannan, Venkateshan;
Andersson, John;
Tegnér, Jesper

Publication type:

Article

SCENERY: a web application for (causal) network reconstruction from cytometry data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. W1, p. W270, doi. 10.1093/nar/gkx448

By:

Papoutsoglou, Georgios;
Athineou, Giorgos;
Lagani, Vincenzo;
Xanthopoulos, Iordanis;
Schmidt, Angelika;
Éliás, Szabolcs;
Tegnér, Jesper;
Tsamardinos, Ioannis

Publication type:

Article

Pre-B cell to macrophage transdifferentiation without significant promoter DNA methylation changes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 5, p. 1954

By:

Rodríguez-Ubreva, Javier;
Ciudad, Laura;
Gómez-Cabrero, David;
Parra, Maribel;
Bussmann, Lars H.;
di Tullio, Alessandro;
Kallin, Eric M.;
Tegnér, Jesper;
Graf, Thomas;
Ballestar, Esteban

Publication type:

Article

Brain Activity Related to Working Memory and Distraction in Children and Adults.

Published in:

Cerebral Cortex, 2007, v. 17, n. 5, p. 1047

By:

Olesen, Pernille J.;
Macoveanu, Julian;
Tegnér, Jesper;
Klingberg, Torkel

Publication type:

Article

Monozygotic twins discordant for common variable immunodeficiency reveal impaired DNA demethylation during naïve-to-memory B-cell transition.

Published in:

Nature Communications, 2015, v. 6, n. 6, p. 7335, doi. 10.1038/ncomms8335

By:

Rodríguez-Cortez, Virginia C.;
del Pino-Molina, Lucia;
Rodríguez-Ubreva, Javier;
Ciudad, Laura;
Gómez-Cabrero, David;
Company, Carlos;
Urquiza, José M.;
Tegnér, Jesper;
Rodríguez-Gallego, Carlos;
López-Granados, Eduardo;
Ballestar, Esteban

Publication type:

Article