Works by Tegally, Houriiyah

Results: 35
    1

    SARS-CoV-2 spike protein diversity at an intra-host level, among SARS-CoV-2 infected individuals in South Africa, 2020 to 2022.

    Published in:
    PLoS ONE, 2023, v. 18, n. 5, p. 1, doi. 10.1371/journal.pone.0286373
    By:
    • Subramoney, Kathleen;
    • Mtileni, Nkhensani;
    • Davis, Ashlyn;
    • Giandhari, Jennifer;
    • Tegally, Houriiyah;
    • Wilkinson, Eduan;
    • Naidoo, Yeshnee;
    • Ramphal, Yajna;
    • Pillay, Sureshnee;
    • Ramphal, Upasana;
    • Simane, Andiswa;
    • Reddy, Bhaveshan;
    • Mashishi, Bonolo;
    • Mbenenge, Nonhlanhla;
    • de Oliveira, Tulio;
    • Fielding, Burtram C.;
    • Treurnicht, Florette K.
    Publication type:
    Article
    2
    3

    Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2.

    Published in:
    PLoS Biology, 2021, v. 19, n. 5, p. 1, doi. 10.1371/journal.pbio.3001236
    By:
    • Vogels, Chantal B. F.;
    • Breban, Mallery I.;
    • Ott, Isabel M.;
    • Alpert, Tara;
    • Petrone, Mary E.;
    • Watkins, Anne E.;
    • Kalinich, Chaney C.;
    • Earnest, Rebecca;
    • Rothman, Jessica E.;
    • Goes de Jesus, Jaqueline;
    • Morales Claro, Ingra;
    • Magalhães Ferreira, Giulia;
    • Crispim, Myuki A. E.;
    • Singh, Lavanya;
    • Tegally, Houriiyah;
    • Anyaneji, Ugochukwu J.;
    • Hodcroft, Emma B.;
    • Mason, Christopher E.;
    • Khullar, Gaurav;
    • Metti, Jessica
    Publication type:
    Article
    4

    A new lineage nomenclature to aid genomic surveillance of dengue virus.

    Published in:
    PLoS Biology, 2024, v. 22, n. 9, p. 1, doi. 10.1371/journal.pbio.3002834
    By:
    • Hill, Verity;
    • Cleemput, Sara;
    • Pereira, James Siqueira;
    • Gifford, Robert J.;
    • Fonseca, Vagner;
    • Tegally, Houriiyah;
    • Brito, Anderson F.;
    • Ribeiro, Gabriela;
    • de Souza, Vinicius Carius;
    • Brcko, Isabela Carvalho;
    • Ribeiro, Igor Santana;
    • De Lima, Iago Trezena Tavares;
    • Slavov, Svetoslav Nanev;
    • Sampaio, Sandra Coccuzzo;
    • Elias, Maria Carolina;
    • Tran, Vi Thuy;
    • Kien, Duong Thi Hue;
    • Huynh, Tuyen;
    • Yacoub, Sophie;
    • Dieng, Idrissa
    Publication type:
    Article
    5

    Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function.

    Published in:
    Molecular Biology & Evolution, 2022, v. 39, n. 4, p. 1, doi. 10.1093/molbev/msac061
    By:
    • Martin, Darren P.;
    • Lytras, Spyros;
    • Lucaci, Alexander G.;
    • Maier, Wolfgang;
    • Grüning, Björn;
    • Shank, Stephen D.;
    • Weaver, Steven;
    • MacLean, Oscar A.;
    • Orton, Richard J.;
    • Lemey, Philippe;
    • Boni, Maciej F.;
    • Tegally, Houriiyah;
    • Harkins, Gordon W.;
    • Scheepers, Cathrine;
    • Bhiman, Jinal N.;
    • Everatt, Josie;
    • Amoako, Daniel G.;
    • San, James Emmanuel;
    • Giandhari, Jennifer;
    • Sigal, Alex
    Publication type:
    Article
    6

    SARS-CoV-2 variants from COVID-19 positive cases in the Free State province, South Africa from July 2020 to December 2021.

    Published in:
    Frontiers in Virology, 2022, p. 1, doi. 10.3389/fviro.2022.935131
    By:
    • Mwangi, Peter;
    • Okendo, Javan;
    • Mogotsi, Milton;
    • Ogunbayo, Ayodeji;
    • Adelabu, Olusesan;
    • Sondlane, Hlengiwe;
    • Maotoana, Makgotso;
    • Mahomed, Lutfiyya;
    • Morobadi, Molefi Daniel;
    • Vawda, Sabeehah;
    • von Gottberg, Anne;
    • Bhiman, Jinal;
    • Tegally, Houriiyah;
    • Wilkinson, Eduan;
    • Giandhari, Jennifer;
    • Pillay, Sureshnee;
    • Naidoo, Yeshnee;
    • Ramphal, Upasana;
    • de Oliveira, Tulio;
    • Bester, Armand
    Publication type:
    Article
    7

    Escape from recognition of SARS-CoV-2 variant spike epitopes but overall preservation of T cell immunity.

    Published in:
    Science Translational Medicine, 2022, v. 14, n. 631, p. 1, doi. 10.1126/scitranslmed.abj6824
    By:
    • Riou, Catherine;
    • Keeton, Roanne;
    • Moyo-Gwete, Thandeka;
    • Hermanus, Tandile;
    • Kgagudi, Prudence;
    • Baguma, Richard;
    • Valley-Omar, Ziyaad;
    • Smith, Mikhail;
    • Tegally, Houriiyah;
    • Doolabh, Deelan;
    • Iranzadeh, Arash;
    • Tyers, Lynn;
    • Mutavhatsindi, Hygon;
    • Tincho, Marius B.;
    • Benede, Ntombi;
    • Marais, Gert;
    • Chinhoyi, Lionel R.;
    • Mennen, Mathilda;
    • Skelem, Sango;
    • du Bruyn, Elsa
    Publication type:
    Article
    8

    Emergence of Omicron FN.1 a descendent of BQ.1.1 in Botswana.

    Published in:
    Virus Evolution, 2024, v. 10, n. 1, p. 1, doi. 10.1093/ve/veae095
    By:
    • Choga, Wonderful T;
    • Gustani-Buss, Emanuele;
    • Tegally, Houriiyah;
    • Maruapula, Dorcas;
    • Yu, Xiaoyu;
    • Moir, Monika;
    • Zuze, Boitumelo J L;
    • James, San Emmanuel;
    • Ndlovu, Nokuthula S;
    • Seru, Kedumetse;
    • Motshosi, Patience;
    • Blenkinsop, Alexandra;
    • Gobe, Irene;
    • Baxter, Cheryl;
    • Manasa, Justen;
    • Lockman, Shahin;
    • Shapiro, Roger;
    • Makhema, Joseph;
    • Wilkinson, Eduan;
    • Blackard, Jason T
    Publication type:
    Article
    9

    SARS-CoV-2 infection in immunosuppression evolves sub-lineages which independently accumulate neutralization escape mutations.

    Published in:
    Virus Evolution, 2024, v. 10, n. 1, p. 1, doi. 10.1093/ve/vead075
    By:
    • Lustig, Gila;
    • Ganga, Yashica;
    • Rodel, Hylton E;
    • Tegally, Houriiyah;
    • Khairallah, Afrah;
    • Jackson, Laurelle;
    • Cele, Sandile;
    • Khan, Khadija;
    • Jule, Zesuliwe;
    • Reedoy, Kajal;
    • Karim, Farina;
    • Bernstein, Mallory;
    • Ndung'u, Thumbi;
    • Moosa, Mahomed-Yunus S;
    • Archary, Derseree;
    • Oliveira, Tulio de;
    • Lessells, Richard;
    • Neher, Richard A;
    • Karim, Salim S Abdool;
    • Sigal, Alex
    Publication type:
    Article
    10

    Replacement of the Gamma by the Delta variant in Brazil: Impact of lineage displacement on the ongoing pandemic.

    Published in:
    Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac024
    By:
    • Giovanetti, Marta;
    • Fonseca, Vagner;
    • Wilkinson, Eduan;
    • Tegally, Houriiyah;
    • San, Emmanuel James;
    • Althaus, Christian L;
    • Xavier, Joilson;
    • Slavov, Svetoslav Nanev;
    • Viala, Vincent Louis;
    • Lima, Alex Ranieri Jerônimo;
    • Ribeiro, Gabriela;
    • Souza-Neto, Jayme A;
    • Fukumasu, Heidge;
    • Coutinho, Luiz Lehmann;
    • Cunha, Rivaldo Venancio da;
    • Freitas, Carla;
    • Melo, Carlos F Campelo de A e;
    • Araújo, Wildo Navegantes de;
    • Said, Rodrigo Fabiano Do Carmo;
    • Almiron, Maria
    Publication type:
    Article
    11

    Transmission dynamics of SARS-CoV-2 within-host diversity in two major hospital outbreaks in South Africa.

    Published in:
    Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab041
    By:
    • San, James E;
    • Ngcapu, Sinaye;
    • Kanzi, Aquillah M;
    • Tegally, Houriiyah;
    • Fonseca, Vagner;
    • Giandhari, Jennifer;
    • Wilkinson, Eduan;
    • Nelson, Chase W;
    • Smidt, Werner;
    • Kiran, Anmol M;
    • Chimukangara, Benjamin;
    • Pillay, Sureshnee;
    • Singh, Lavanya;
    • Fish, Maryam;
    • Gazy, Inbal;
    • Martin, Darren P;
    • Khanyile, Khulekani;
    • Lessells, Richard;
    • Oliveira, Tulio de
    Publication type:
    Article
    12
    13
    14
    15

    Reply to Molldrem.

    Published in:
    2023
    By:
    • Maponga, Tongai G;
    • Jeffries, Montenique;
    • Tegally, Houriiyah;
    • Sutherland, Andrew;
    • Wilkinson, Eduan;
    • Lessells, Richard J;
    • Msomi, Nokukhanya;
    • Zyl, Gert van;
    • Oliveira, Tulio de;
    • Preiser, Wolfgang
    Publication type:
    Letter to the Editor
    16
    17

    Impacts of climate change-related human migration on infectious diseases.

    Published in:
    Nature Climate Change, 2024, v. 14, n. 8, p. 793, doi. 10.1038/s41558-024-02078-z
    By:
    • Tsui, Joseph L.-H.;
    • Pena, Rosario Evans;
    • Moir, Monika;
    • Inward, Rhys P. D.;
    • Wilkinson, Eduan;
    • San, James Emmanuel;
    • Poongavanan, Jenicca;
    • Bajaj, Sumali;
    • Gutierrez, Bernardo;
    • Dasgupta, Abhishek;
    • de Oliveira, Tulio;
    • Kraemer, Moritz U. G.;
    • Tegally, Houriiyah;
    • Sambaturu, Prathyush
    Publication type:
    Article
    18

    Genomic Characterization of Circulating Dengue Virus, Ethiopia, 2022--2023.

    Published in:
    Emerging Infectious Diseases, 2025, v. 31, n. 3, p. 516, doi. 10.3201/eid3103.240996
    By:
    • Abera, Adugna;
    • Tegally, Houriiyah;
    • Tasew, Geremew;
    • Wilkinson, Eduan;
    • Ali, Abraham;
    • Regasa, Feyisa;
    • Bitew, Molalegne;
    • Belachew, Mahlet;
    • Chabuka, Lucious;
    • Mwanyika, Gaspary;
    • Tshiabuila, Derek;
    • Giandhari, Jennifer;
    • Pillay, Sureshnee;
    • Poogavanan, Jenicca;
    • Moir, Monika;
    • Kraemer, Moritz U. G.;
    • Khan, Kamran;
    • Huber, Carmen;
    • Tollera, Getachew;
    • Rinke de Wit, Tobias F.
    Publication type:
    Article
    19

    Rapid Replacement of SARS-CoV-2 Variants by Delta and Subsequent Arrival of Omicron, Uganda, 2021.

    Published in:
    Emerging Infectious Diseases, 2022, v. 28, n. 5, p. 1021, doi. 10.3201/eid2805.220121
    By:
    • Bbosa, Nicholas;
    • Ssemwanga, Deogratius;
    • Namagembe, Hamidah;
    • Kiiza, Ronald;
    • Kiconco, Jocelyn;
    • Kayiwa, John;
    • Lutalo, Tom;
    • Lutwama, Julius;
    • Ssekagiri, Alfred;
    • Ssewanyana, Isaac;
    • Nabadda, Susan;
    • Kyobe-Bbosa, Henry;
    • Giandhari, Jennifer;
    • Pillay, Sureshnee;
    • Ramphal, Upasana;
    • Ramphal, Yajna;
    • Naidoo, Yeshnee;
    • Tshiabuila, Derek;
    • Tegally, Houriiyah;
    • San, Emmanuel J.
    Publication type:
    Article
    20
    21
    22

    SARS-CoV-2 Genetic Diversity and Lineage Dynamics in Egypt during the First 18 Months of the Pandemic.

    Published in:
    Viruses (1999-4915), 2022, v. 14, n. 9, p. 1878, doi. 10.3390/v14091878
    By:
    • Roshdy, Wael H.;
    • Khalifa, Mohamed K.;
    • San, James Emmanuel;
    • Tegally, Houriiyah;
    • Wilkinson, Eduan;
    • Showky, Shymaa;
    • Martin, Darren Patrick;
    • Moir, Monika;
    • Naguib, Amel;
    • Elguindy, Nancy;
    • Gomaa, Mokhtar R.;
    • Fahim, Manal;
    • Abu Elsood, Hanaa;
    • Mohsen, Amira;
    • Galal, Ramy;
    • Hassany, Mohamed;
    • Lessells, Richard J.;
    • Al-Karmalawy, Ahmed A.;
    • EL-Shesheny, Rabeh;
    • Kandeil, Ahmed M.
    Publication type:
    Article
    23

    Multiple Early Introductions of SARS-CoV-2 to Cape Town, South Africa.

    Published in:
    Viruses (1999-4915), 2021, v. 13, n. 3, p. 526, doi. 10.3390/v13030526
    By:
    • Engelbrecht, Susan;
    • Delaney, Kayla;
    • Kleinhans, Bronwyn;
    • Wilkinson, Eduan;
    • Tegally, Houriiyah;
    • Stander, Tania;
    • van Zyl, Gert;
    • Preiser, Wolfgang;
    • de Oliveira, Tulio;
    • de Arruda, Luciana Barros;
    • Campos, Fabrício S.;
    • da Fonseca, Flavio Guimaraes
    Publication type:
    Article
    24

    Insights into SARS‐CoV‐2 in Angola during the COVID‐19 peak: Molecular epidemiology and genome surveillance.

    Published in:
    Influenza & Other Respiratory Viruses, 2023, v. 17, n. 9, p. 1, doi. 10.1111/irv.13198
    By:
    • Francisco, Ngiambudulu M.;
    • van Wyk, Stephanie;
    • Moir, Monika;
    • San, James Emmanuel;
    • Sebastião, Cruz S.;
    • Tegally, Houriiyah;
    • Xavier, Joicymara;
    • Maharaj, Akhil;
    • Neto, Zoraima;
    • Afonso, Pedro;
    • Jandondo, Domingos;
    • Paixão, Joana;
    • Miranda, Julio;
    • David, Kumbelembe;
    • Inglês, Luzia;
    • Pereira, Amilton;
    • Paulo, Agostinho;
    • Carralero, Raisa Rivas;
    • Freitas, Helga Reis;
    • Mufinda, Franco
    Publication type:
    Article
    25

    Alignment-free viral sequence classification at scale.

    Published in:
    BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11554-5
    By:
    • van Zyl, Daniel J.;
    • Dunaiski, Marcel;
    • Tegally, Houriiyah;
    • Baxter, Cheryl;
    • de Oliveira, Tulio;
    • Xavier, Joicymara S.;
    • The INFORM Africa research study group;
    • Riley, Christina;
    • Winters, Anna;
    • Naranbhai, Vivek;
    • Made, Felix;
    • Karim, Salim Abdool;
    • Otwombe, Kennedy;
    • Abimiku, Alash'le;
    • Osawe, Sophia;
    • Onyemata, James;
    • Dakum, Patrick;
    • Murtala-Ibrahim, Fati;
    • Andrew, Nifarta;
    • Musa, Aminu
    Publication type:
    Article
    26

    Author Correction: Omicron BA.4/BA.5 escape neutralizing immunity elicited by BA.1 infection.

    Published in:
    2022
    By:
    • Khan, Khadija;
    • Karim, Farina;
    • Ganga, Yashica;
    • Bernstein, Mallory;
    • Jule, Zesuliwe;
    • Reedoy, Kajal;
    • Cele, Sandile;
    • Lustig, Gila;
    • Amoako, Daniel;
    • Wolter, Nicole;
    • Samsunder, Natasha;
    • Sivro, Aida;
    • San, James Emmanuel;
    • Giandhari, Jennifer;
    • Tegally, Houriiyah;
    • Pillay, Sureshnee;
    • Naidoo, Yeshnee;
    • Mazibuko, Matilda;
    • Miya, Yoliswa;
    • Ngcobo, Nokuthula
    Publication type:
    Correction Notice
    27

    Omicron BA.4/BA.5 escape neutralizing immunity elicited by BA.1 infection.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32396-9
    By:
    • Khan, Khadija;
    • Karim, Farina;
    • Ganga, Yashica;
    • Bernstein, Mallory;
    • Jule, Zesuliwe;
    • Reedoy, Kajal;
    • Cele, Sandile;
    • Lustig, Gila;
    • Amoako, Daniel;
    • Wolter, Nicole;
    • Samsunder, Natasha;
    • Sivro, Aida;
    • San, James Emmanuel;
    • Giandhari, Jennifer;
    • Tegally, Houriiyah;
    • Pillay, Sureshnee;
    • Naidoo, Yeshnee;
    • Mazibuko, Matilda;
    • Miya, Yoliswa;
    • Ngcobo, Nokuthula
    Publication type:
    Article
    28

    Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic.

    Published in:
    Genes, 2020, v. 11, n. 8, p. 949, doi. 10.3390/genes11080949
    By:
    • Pillay, Sureshnee;
    • Giandhari, Jennifer;
    • Tegally, Houriiyah;
    • Wilkinson, Eduan;
    • Chimukangara, Benjamin;
    • Lessells, Richard;
    • Moosa, Yunus;
    • Mattison, Stacey;
    • Gazy, Inbal;
    • Fish, Maryam;
    • Singh, Lavanya;
    • Khanyile, Khulekani Sedwell;
    • San, James Emmanuel;
    • Fonseca, Vagner;
    • Giovanetti, Marta;
    • Alcantara, Luiz Carlos;
    • de Oliveira, Tulio
    Publication type:
    Article
    29

    Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus.

    Published in:
    PLoS Biology, 2022, v. 20, n. 8, p. 1, doi. 10.1371/journal.pbio.3001769
    By:
    • Happi, Christian;
    • Adetifa, Ifedayo;
    • Mbala, Placide;
    • Njouom, Richard;
    • Nakoune, Emmanuel;
    • Happi, Anise;
    • Ndodo, Nnaemeka;
    • Ayansola, Oyeronke;
    • Mboowa, Gerald;
    • Bedford, Trevor;
    • Neher, Richard A.;
    • Roemer, Cornelius;
    • Hodcroft, Emma;
    • Tegally, Houriiyah;
    • O'Toole, Áine;
    • Rambaut, Andrew;
    • Pybus, Oliver;
    • Kraemer, Moritz U. G.;
    • Wilkinson, Eduan;
    • Isidro, Joana
    Publication type:
    Article
    30

    Identification of SARS‐CoV‐2 Omicron variant using spike gene target failure and genotyping assays, Gauteng, South Africa, 2021.

    Published in:
    Journal of Medical Virology, 2022, v. 94, n. 8, p. 3676, doi. 10.1002/jmv.27797
    By:
    • Subramoney, Kathleen;
    • Mtileni, Nkhensani;
    • Bharuthram, Avani;
    • Davis, Ashlyn;
    • Kalenga, Beauty;
    • Rikhotso, Mikateko;
    • Maphahlele, Mpho;
    • Giandhari, Jennifer;
    • Naidoo, Yeshnee;
    • Pillay, Sureshnee;
    • Ramphal, Upasana;
    • Ramphal, Yajna;
    • Tegally, Houriiyah;
    • Wilkinson, Eduan;
    • Mohale, Thabo;
    • Ismail, Arshad;
    • Mashishi, Bonolo;
    • Mbenenge, Nonhlanhla;
    • de Oliveira, Tulio;
    • Makatini, Zinhle
    Publication type:
    Article
    31

    "The COVID-19 pandemic in BRICS: Milestones, interventions, and molecular epidemiology".

    Published in:
    PLoS Global Public Health, 2024, v. 4, n. 12, p. 1, doi. 10.1371/journal.pgph.0003023
    By:
    • van Wyk, Stephanie;
    • Moir, Monika;
    • Banerjee, Anindita;
    • Bazykin, Georgii A.;
    • Biswas, Nidhan K.;
    • Sitharam, Nikita;
    • Das, Saumitra;
    • Ma, Wentai;
    • Maitra, Arindam;
    • Mazumder, Anup;
    • Karim, Wasim Abdool;
    • Lamarca, Alessandra Pavan;
    • Li, Mingkun;
    • Nabieva, Elena;
    • Tegally, Houriiyah;
    • San, James Emmanuel;
    • Vasconcelos, Ana Tereza R.;
    • Xavier, Joicymara S.;
    • Wilkinson, Eduan;
    • de Oliveira, Tulio
    Publication type:
    Article
    32

    Emergence and phenotypic characterization of the global SARS-CoV-2 C.1.2 lineage.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29579-9
    By:
    • Scheepers, Cathrine;
    • Everatt, Josie;
    • Amoako, Daniel G.;
    • Tegally, Houriiyah;
    • Wibmer, Constantinos Kurt;
    • Mnguni, Anele;
    • Ismail, Arshad;
    • Mahlangu, Boitshoko;
    • Lambson, Bronwen E.;
    • Martin, Darren P.;
    • Wilkinson, Eduan;
    • San, James Emmanuel;
    • Giandhari, Jennifer;
    • Manamela, Nelia;
    • Ntuli, Noxolo;
    • Kgagudi, Prudence;
    • Cele, Sandile;
    • Richardson, Simone I.;
    • Pillay, Sureshnee;
    • Mohale, Thabo
    Publication type:
    Article
    33
    34

    Molecular Epidemiology and Diversity of SARS-CoV-2 in Ethiopia, 2020–2022.

    Published in:
    Genes, 2023, v. 14, n. 3, p. 705, doi. 10.3390/genes14030705
    By:
    • Sisay, Abay;
    • Tshiabuila, Derek;
    • van Wyk, Stephanie;
    • Tesfaye, Abraham;
    • Mboowa, Gerald;
    • Oyola, Samuel O.;
    • Tesema, Sofonias Kifle;
    • Baxter, Cheryl;
    • Martin, Darren;
    • Lessells, Richard;
    • Tegally, Houriiyah;
    • Moir, Monika;
    • Giandhari, Jennifer;
    • Pillay, Sureshnee;
    • Singh, Lavanya;
    • Ramphal, Yajna;
    • Maharaj, Arisha;
    • Pillay, Yusasha;
    • Maharaj, Akhil;
    • Naidoo, Yeshnee
    Publication type:
    Article
    35