Works by Taylor, John-Stephen

Results: 32

A high-throughput and quantitative method to assess the mutagenic potential of translesion DNA synthesis.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 8, p. e96, doi. 10.1093/nar/gkt141

By:

Taggart, David J.;
Camerlengo, Terry L.;
Harrison, Jason K.;
Sherrer, Shanen M.;
Kshetry, Ajay K.;
Taylor, John-Stephen;
Kun Huang;
Zucai Suo

Publication type:

Article

Methyl CpG binding protein 2 (MeCP2) enhances photodimer formation at methyl-CpG sites but suppresses dimer deamination.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 20, p. 6943, doi. 10.1093/nar/gkq582

By:

Cannistraro, Vincent J.;
Taylor, John-Stephen A.

Publication type:

Article

Serial analysis of mutation spectra (SAMS): a new approach for the determination of mutation spectra of site-specific DNA damage and their sequence dependence.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 18, p. 6004, doi. 10.1093/nar/gkn595

By:

Fang, Huafeng;
Taylor, John-Stephen

Publication type:

Article

Identification and characterization of high affinity antisense PNAs for the human unr (upstream of N-ras) mRNA which is uniquely overexpressed in MCF-7 breast cancer cells.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 21, p. 6700, doi. 10.1093/nar/gki968

By:

Fang, Huafeng;
Yue, Xuan;
Li, Xiaoxu;
Taylor, John-Stephen

Publication type:

Article

Response of human REV1 to different DNA damage: preferential dCMP insertion opposite the lesion.

Published in:

Nucleic Acids Research, 2002, v. 30, n. 7, p. 1630, doi. 10.1093/nar/30.7.1630

By:

Zhang, Yanbin;
Wu, Xiaohua;
Rechkoblit, Olga;
Geacintov, Nicholas E.;
Taylor, John-Stephen;
WangTo whom correspondence should be addressed. Tel: +1 859 323 5784; Fax: +1 859 323 1059; Email: zwang@uky.edu, Zhigang

Publication type:

Article

Translesion synthesis by yeast DNA polymerase ζ from templates containing lesions of ultraviolet radiation and acetylaminofluorene.

Published in:

Nucleic Acids Research, 2001, v. 29, n. 13, p. 2875, doi. 10.1093/nar/29.13.2875

By:

Guo, Dongyu;
Wu, Xiaohua;
Rajpal, Deepak K.;
Taylor, John-Stephen;
Wang, Zhigang

Publication type:

Article

Response of human DNA polymerase ι to DNA lesions.

Published in:

Nucleic Acids Research, 2001, v. 29, n. 4, p. 928, doi. 10.1093/nar/29.4.928

By:

Zhang, Yanbin;
Yuan, Fenghua;
Wu, Xiaohua;
Taylor, John-Stephen;
Wang, Zhigang

Publication type:

Article

Models for the solution state structure of the (6-4) photoproduct of thymidylyl-(3′ → 5′)-thymidine derived via a distance- and angle-constrained conformation search procedure.

Published in:

Biopolymers, 1988, v. 27, n. 10, p. 1571, doi. 10.1002/bip.360271004

By:

Taylor, John-Stephen;
Garrett, Daniel S.;
Wang, Michael J.

Publication type:

Article

Adjacent and Nonadjacent Dipyrimidine Photoproducts as Intrinsic Probes of DNA Secondary and Tertiary Structure†.

Published in:

2023

By:

Taylor, John‐Stephen

Publication type:

Literature Review

Ability of the Putative Decomposition Products of 2,3‐dioxetanes of Indoles to Photosensitize Cyclobutane Pyrimidine Dimer (CPD) Formation and its Implications for the "Dark" (Chemisensitized) Pathway to CPDs in Melanocytes†.

Published in:

Photochemistry & Photobiology, 2022, v. 98, n. 2, p. 442, doi. 10.1111/php.13529

By:

Wang, Yanjing;
Cacchillo, Elena M.;
Niedzwiedzki, Dariusz M.;
Taylor, John‐Stephen

Publication type:

Article

Photocrosslinking of G‐Quadruplex‐Forming Sequences found in Human Promoters.

Published in:

Photochemistry & Photobiology, 2019, v. 95, n. 1, p. 252, doi. 10.1111/php.12991

By:

Smith‐Carpenter, Jillian E.;
Taylor, John‐Stephen

Publication type:

Article

Evidence for Reverse Hoogsteen Hairpin Intermediates in the Photocrosslinking of Human Telomeric DNA Sequences.

Published in:

Photochemistry & Photobiology, 2018, v. 94, n. 4, p. 685, doi. 10.1111/php.12898

By:

Lu, Chen;
Smith‐Carpenter, Jillian E.;
Taylor, John‐Stephen A.

Publication type:

Article

Error-prone lesion bypass by human DNA polymerase η.

Published in:

Nucleic Acids Research, 2000, v. 28, n. 23, p. 4717, doi. 10.1093/nar/28.23.4717

By:

Zhang, Yanbin;
Yuan, Fenghua;
Wu, Xiaohua;
Rechkoblit, Olga;
Taylor, John-Stephen;
Geacintov, Nicholas E.;
Wang, Zhigang

Publication type:

Article

Error-free and error-prone lesion bypass by human DNA polymerase κ in vitro.

Published in:

Nucleic Acids Research, 2000, v. 28, n. 21, p. 4138, doi. 10.1093/nar/28.21.4138

By:

Zhang, Yanbin;
Yuan, Fenghua;
Wu, Xiaohua;
Wang, Mu;
Rechkoblit, Olga;
Taylor, John-Stephen;
Geacintov, Nicholas E.;
Wang, Zhigang

Publication type:

Article

Substrate specificity of ultraviolet DNA endonuclease (UVDE/Uve1p) from Schizosaccharomyces pombe.

Published in:

Nucleic Acids Research, 1999, v. 27, n. 11, p. 2256, doi. 10.1093/nar/27.11.2256

By:

Avery, Angela M.;
Kaur, Balveen;
Taylor, John‐Stephen;
Mello, Jill A.;
Essigmann, John M.;
Doetsch, Paul W.

Publication type:

Article

Thermodynamic and base‐pairing studies of matched and mismatched DNA dodecamer duplexes containing cis‐syn, (6‐4) and Dewar photoproducts of TT.

Published in:

Nucleic Acids Research, 1998, v. 26, n. 16, p. 3845, doi. 10.1093/nar/26.16.3845

By:

Jing, Yueqing;
Kao, Jeffrey F.‐L.;
Taylor, John‐Stephen

Publication type:

Article

Template‐directed photoligation of oligodeoxyribonucleotides via 4‐thiothymidine.

Published in:

Nucleic Acids Research, 1998, v. 26, n. 13, p. 3300, doi. 10.1093/nar/26.13.3300

By:

Liu, Jianquan;
Taylor, John‐Stephen

Publication type:

Article

Solid phase-supported thymine dimers for the construction of dimer-containing DNA by combined chemical and enzymatic synthesis: a potentially general method for the efficient incorporation of modified nucleotides into DNA.

Published in:

Nucleic Acids Research, 1997, v. 25, n. 19, p. 3783, doi. 10.1093/nar/25.19.3783

By:

Ordoukhanian, Phillip;
Taylor, John-Stephen

Publication type:

Article

Mutation Spectra of TA*, the Major Photoproduct of Thymidylyl-(3′–5′)-Deoxyadenosine, in Escherichia Coli under SOS Conditions.

Published in:

Nucleic Acids Research, 1996, v. 24, n. 8, p. 1561, doi. 10.1093/nar/24.8.1561

By:

Zhao, Xiaodong;
Taylor, John-Stephen

Publication type:

Article

The Structure of d(TpA)*, the Major Photoproduct of Thymidylyl-(3′–5′)-Deoxyadenosine.

Published in:

Nucleic Acids Research, 1996, v. 24, n. 8, p. 1554, doi. 10.1093/nar/24.8.1554

By:

Zhao, Xiaodong;
Nadji, Sourena;
Kao, Jeffrey L.-F.;
Taylor, John-Stephen

Publication type:

Article

Imaging mRNA Expression in Live Cells via PNA·DNA Strand Displacement-Activated Probes.

Published in:

Journal of Nucleic Acids, 2012, p. 1, doi. 10.1155/2012/962652

By:

Zhenghui Wang;
Ke Zhang;
Wooley, Karen L.;
Taylor, John-Stephen

Publication type:

Article

Pre-Steady-State Kinetic Analysis of Truncated and Full-Length Saccharomyces cerevisiae DNA Polymerase Eta.

Published in:

Journal of Nucleic Acids, 2010, p. 1, doi. 10.4061/2010/871939

By:

Brown, Jessica A.;
Likui Zhang;
Sherrer, Shanen M.;
Taylor, John-Stephen;
Burgers, Peter M. J.;
Suo, Zucai

Publication type:

Article

Inhibition of Heat Shock Transcription Factor Binding by a Linear Polyamide Binding in an Unusual 1:1 Mode.

Published in:

ChemBioChem, 2012, v. 13, n. 1, p. 97, doi. 10.1002/cbic.201100524

By:

Wang, Rongsheng E.;
Pandita, Raj K.;
Cai, Jianfeng;
Hunt, Clayton R.;
Taylor, John-Stephen

Publication type:

Article

phrA, the major photoreactivating factor in the cyanobacterium Synechocystis sp. strain PCC 6803 codes for a cyclobutane-pyrimidine-dimer-specific DNA photolyase.

Published in:

Archives of Microbiology, 2000, v. 173, n. 5/6, p. 412, doi. 10.1007/S002030000164

By:

Wing-On Ng;
Zentella, Rodolfo;
Yinsheng Wang;
Taylor, John-Stephen A.;
Pakrasi, Himadri B.

Publication type:

Article

The effect of flanking bases on direct and triplet sensitized cyclobutane pyrimidine dimer formation in DNA depends on the dipyrimidine, wavelength and the photosensitizer.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4266, doi. 10.1093/nar/gkab214

By:

Lu, Chen;
Gutierrez-Bayona, Natalia Eugenia;
Taylor, John-Stephen

Publication type:

Article

Modulation of cyclobutane thymine photodimer formation in T11-tracts in rotationally phased nucleosome core particles and DNA minicircles.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 12, p. 7031, doi. 10.1093/nar/gkx427

By:

Kesai Wang;
Taylor, John-Stephen A.

Publication type:

Article

Synergistic modulation of cyclobutane pyrimidine dimer photoproduct formation and deamination at a TmCG site over a full helical DNA turn in a nucleosome core particle.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 21, p. 13122, doi. 10.1093/nar/gku1049

By:

Song, Qian;
Cannistraro, Vincent J.;
Taylor, John-Stephen

Publication type:

Article

Effect of sequence and metal ions on UVB-induced anti cyclobutane pyrimidine dimer formation in human telomeric DNA sequences.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 8, p. 5007, doi. 10.1093/nar/gku163

By:

Smith, Jillian E.;
Lu, Chen;
Taylor, John-Stephen

Publication type:

Article

Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7.

Published in:

Nature Structural & Molecular Biology, 2004, v. 11, n. 8, p. 784, doi. 10.1038/nsmb792

By:

Ying Li;
Dutta, Shuchismita;
Doublié, Sylvie;
Moh'd Bdour, Hussam;
Taylor, John-Stephen;
Ellenberger, Tom

Publication type:

Article

Polyphosphoester-Based Cationic Nanoparticles Serendipitously Release Integral Biologically-Active Components to Serve as Novel Degradable Inducible Nitric Oxide Synthase Inhibitors.

Published in:

Advanced Materials, 2013, v. 25, n. 39, p. 5609, doi. 10.1002/adma.201302842

By:

Shen, Yuefei;
Zhang, Shiyi;
Zhang, Fuwu;
Loftis, Alexander;
Pavía-Sanders, Adriana;
Zou, Jiong;
Fan, Jingwei;
Taylor, John-Stephen A.;
Wooley, Karen L.

Publication type:

Article

Purification and Partial Characterization of (6-4) Photoproduct DNA Photolyase from Xenopus laevis.

Published in:

Photochemistry & Photobiology, 1996, v. 63, n. 3, p. 292, doi. 10.1111/j.1751-1097.1996.tb03028.x

By:

Kim, Sang-Tae;
Malhotra, Khushbeer;
Taylor, John-Stephen;
Sancar, Aziz

Publication type:

Article

QUANTITATIVE CONVERSION OF THE (6-4) PHOTOPRODUCT OF TpdC TO ITS DEWAR VALENCE ISOMER UPON EXPOSURE TO SIMULATED SUNLIGHT.

Published in:

Photochemistry & Photobiology, 1990, v. 51, n. 2, p. 161, doi. 10.1111/j.1751-1097.1990.tb01698.x

By:

Taylor, John-Stephen;
Lu, Hwang-Fun;
Kotyk, John J.

Publication type:

Article

Works by Taylor, John-Stephen

A high-throughput and quantitative method to assess the mutagenic potential of translesion DNA synthesis.

Methyl CpG binding protein 2 (MeCP2) enhances photodimer formation at methyl-CpG sites but suppresses dimer deamination.

Serial analysis of mutation spectra (SAMS): a new approach for the determination of mutation spectra of site-specific DNA damage and their sequence dependence.

Identification and characterization of high affinity antisense PNAs for the human unr (upstream of N-ras) mRNA which is uniquely overexpressed in MCF-7 breast cancer cells.

Response of human REV1 to different DNA damage: preferential dCMP insertion opposite the lesion.

Translesion synthesis by yeast DNA polymerase ζ from templates containing lesions of ultraviolet radiation and acetylaminofluorene.

Response of human DNA polymerase ι to DNA lesions.

Models for the solution state structure of the (6-4) photoproduct of thymidylyl-(3′ → 5′)-thymidine derived via a distance- and angle-constrained conformation search procedure.

Adjacent and Nonadjacent Dipyrimidine Photoproducts as Intrinsic Probes of DNA Secondary and Tertiary Structure<sup>†</sup>.

Ability of the Putative Decomposition Products of 2,3‐dioxetanes of Indoles to Photosensitize Cyclobutane Pyrimidine Dimer (CPD) Formation and its Implications for the "Dark" (Chemisensitized) Pathway to CPDs in Melanocytes<sup>†</sup>.

Photocrosslinking of G‐Quadruplex‐Forming Sequences found in Human Promoters.

Evidence for Reverse Hoogsteen Hairpin Intermediates in the Photocrosslinking of Human Telomeric DNA Sequences.

Error-prone lesion bypass by human DNA polymerase η.

Error-free and error-prone lesion bypass by human DNA polymerase κ in vitro.

Substrate specificity of ultraviolet DNA endonuclease (UVDE/Uve1p) from Schizosaccharomyces pombe.

Thermodynamic and base‐pairing studies of matched and mismatched DNA dodecamer duplexes containing cis‐syn, (6‐4) and Dewar photoproducts of TT.

Template‐directed photoligation of oligodeoxyribonucleotides via 4‐thiothymidine.

Solid phase-supported thymine dimers for the construction of dimer-containing DNA by combined chemical and enzymatic synthesis: a potentially general method for the efficient incorporation of modified nucleotides into DNA.

Mutation Spectra of TA*, the Major Photoproduct of Thymidylyl-(3′–5′)-Deoxyadenosine, in Escherichia Coli under SOS Conditions.

The Structure of d(TpA)*, the Major Photoproduct of Thymidylyl-(3′–5′)-Deoxyadenosine.

Imaging mRNA Expression in Live Cells via PNA·DNA Strand Displacement-Activated Probes.

Pre-Steady-State Kinetic Analysis of Truncated and Full-Length Saccharomyces cerevisiae DNA Polymerase Eta.

Inhibition of Heat Shock Transcription Factor Binding by a Linear Polyamide Binding in an Unusual 1:1 Mode.

phrA, the major photoreactivating factor in the cyanobacterium Synechocystis sp. strain PCC 6803 codes for a cyclobutane-pyrimidine-dimer-specific DNA photolyase.

The effect of flanking bases on direct and triplet sensitized cyclobutane pyrimidine dimer formation in DNA depends on the dipyrimidine, wavelength and the photosensitizer.

Modulation of cyclobutane thymine photodimer formation in T<sub>11</sub>-tracts in rotationally phased nucleosome core particles and DNA minicircles.

Synergistic modulation of cyclobutane pyrimidine dimer photoproduct formation and deamination at a TmCG site over a full helical DNA turn in a nucleosome core particle.

Effect of sequence and metal ions on UVB-induced anti cyclobutane pyrimidine dimer formation in human telomeric DNA sequences.

Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7.

Polyphosphoester-Based Cationic Nanoparticles Serendipitously Release Integral Biologically-Active Components to Serve as Novel Degradable Inducible Nitric Oxide Synthase Inhibitors.

Purification and Partial Characterization of (6-4) Photoproduct DNA Photolyase from Xenopus laevis.

QUANTITATIVE CONVERSION OF THE (6-4) PHOTOPRODUCT OF TpdC TO ITS DEWAR VALENCE ISOMER UPON EXPOSURE TO SIMULATED SUNLIGHT.