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Disentangling oncogenic amplicons in esophageal adenocarcinoma.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47619-4
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- Publication type:
- Article
Author Correction: Disentangling oncogenic amplicons in esophageal adenocarcinoma.
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- 2024
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- Publication type:
- Correction Notice
Disentangling oncogenic amplicons in esophageal adenocarcinoma.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47619-4
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- Publication type:
- Article
Another view of sequential sampling in the birth process with immigration.
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- Journal of Mathematical Biology, 2024, v. 88, n. 3, p. 1, doi. 10.1007/s00285-023-02041-0
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- Publication type:
- Article
Correction: Spatial regulation of Drosophila ovarian Follicle Stem Cell division rates and cell cycle transitions.
- Published in:
- PLoS Genetics, 2023, v. 19, n. 11, p. 1, doi. 10.1371/journal.pgen.1011040
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- Publication type:
- Article
Spatial regulation of Drosophila ovarian Follicle Stem Cell division rates and cell cycle transitions.
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- PLoS Genetics, 2023, v. 19, n. 9, p. 1, doi. 10.1371/journal.pgen.1010965
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- Publication type:
- Article
Rearrangement processes and structural variations show evidence of selection in oesophageal adenocarcinomas.
- Published in:
- Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03238-7
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- Publication type:
- Article
A note on the Screaming Toes game.
- Published in:
- Journal of Applied Probability, 2022, v. 59, n. 1, p. 118, doi. 10.1017/jpr.2021.32
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- Publication type:
- Article
HYPOTHESIS TESTING FOR THE COVARIANCE MATRIX IN HIGH-DIMENSIONAL TRANSPOSABLE DATA WITH KRONECKER PRODUCT DEPENDENCE STRUCTURE.
- Published in:
- Statistica Sinica, 2021, v. 31, n. 3, p. 1309, doi. 10.5705/ss.202018.0268
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- Publication type:
- Article
The mutREAD method detects mutational signatures from low quantities of cancer DNA.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16974-3
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- Publication type:
- Article
GENE-24. IMPACT OF THERAPY ON EVOLUTION OF GBM.
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- Neuro-Oncology, 2018, v. 20, p. vi108, doi. 10.1093/neuonc/noy148.450
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- Publication type:
- Article
HDTD: analyzing multi-tissue gene expression data.
- Published in:
- Bioinformatics, 2016, v. 32, n. 14, p. 2193, doi. 10.1093/bioinformatics/btw224
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- Publication type:
- Article
Metabolomic changes during cellular transformation monitored by metabolite-metabolite correlation analysis and correlated with gene expression.
- Published in:
- Metabolomics, 2015, v. 11, n. 6, p. 1848, doi. 10.1007/s11306-015-0838-z
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- Publication type:
- Article
Mobile element insertions are frequent in oesophageal adenocarcinomas and can mislead paired-end sequencing analysis.
- Published in:
- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1685-z
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- Publication type:
- Article
multiSNV: a probabilistic approach for improving detection of somatic point mutations from multiple related tumour samples.
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- Nucleic Acids Research, 2015, v. 43, n. 9, p. e61, doi. 10.1093/nar/gkv135
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- Publication type:
- Article
Testing the mean matrix in high-dimensional transposable data.
- Published in:
- Biometrics, 2015, v. 71, n. 1, p. 157, doi. 10.1111/biom.12257
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- Publication type:
- Article
Phenotype Specific Analyses Reveal Distinct Regulatory Mechanism for Chronically Activated p53.
- Published in:
- PLoS Genetics, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pgen.1005053
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- Publication type:
- Article
Boosting Wnt activity during colorectal cancer progression through selective hypermethylation of Wnt signaling antagonists.
- Published in:
- BMC Cancer, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2407-14-891
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- Publication type:
- Article
Boosting Wnt activity during colorectal cancer progression through selective hypermethylation of Wnt signaling antagonists.
- Published in:
- BMC Cancer, 2014, v. 14, p. 1, doi. 10.1186/1471-2407-14-891
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- Publication type:
- Article
Quantifying the impact of inter-site heterogeneity on the distribution of ChIP-seq data.
- Published in:
- Frontiers in Genetics, 2014, v. 5, p. 1, doi. 10.3389/fgene.2014.00399
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- Publication type:
- Article
Normalization of metabolomics data with applications to correlation maps.
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- Bioinformatics, 2014, v. 30, n. 15, p. 2155, doi. 10.1093/bioinformatics/btu175
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- Publication type:
- Article
COMPLEX EVOLUTIONARY DYNAMICS GENERATES GENETIC DIVERSITY AND INTRA-TUMOR HETEROGENEITY IN INDIVIDUAL PATIENTS WITH GLIOBLASTOMA.
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- Neuro-Oncology, 2014, v. 16, n. suppl_3, p. iii7, doi. 10.1093/neuonc/nou206.23
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- Publication type:
- Article
Fkh1 and Fkh2 Bind Multiple Chromosomal Elements in the <i>S. cerevisiae</i> Genome with Distinct Specificities and Cell Cycle Dynamics.
- Published in:
- PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0087647
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- Publication type:
- Article
Flexible analysis of RNA-seq data using mixed effects models.
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- Bioinformatics, 2014, v. 30, n. 2, p. 180, doi. 10.1093/bioinformatics/btt624
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- Publication type:
- Article
Boosting Wnt activity during colorectal cancer progression through selective hypermethylation of Wnt signaling antagonists.
- Published in:
- 2014
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- Publication type:
- journal article
Automated quantification of the schooling behaviour of sticklebacks.
- Published in:
- EURASIP Journal on Image & Video Processing, 2013, v. 2013, n. 1, p. 1, doi. 10.1186/1687-5281-2013-61
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- Publication type:
- Article
The Relative Timing of Mutations in a Breast Cancer Genome.
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- PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0064991
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- Publication type:
- Article
Transcriptional Dynamics Elicited by a Short Pulse of Notch Activation Involves Feed-Forward Regulation by E(spl)/Hes Genes.
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- PLoS Genetics, 2013, v. 9, n. 1, p. 1, doi. 10.1371/journal.pgen.1003162
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- Publication type:
- Article
Calling Sample Mix-Ups in Cancer Population Studies.
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- PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0041815
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- Publication type:
- Article
Using GFP Video to Track 3D Movement and Conditional Gene Expression in Free-Moving Flies.
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- PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0040506
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- Publication type:
- Article
High DNA Methylation Pattern Intratumoral Diversity Implies Weak Selection in Many Human Colorectal Cancers.
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- PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0021657
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- Publication type:
- Article
Modeling Evolutionary Dynamics of Epigenetic Mutations in Hierarchically Organized Tumors.
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- PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1001132
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- Publication type:
- Article
BayesPeak—an R package for analysing ChIP-seq data.
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- Bioinformatics, 2011, v. 27, n. 5, p. 713, doi. 10.1093/bioinformatics/btq685
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- Publication type:
- Article
Dating Primate Divergences through an Integrated Analysis of Palaeontological and Molecular Data.
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- Systematic Biology, 2011, v. 60, n. 1, p. 16, doi. 10.1093/sysbio/syq054
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- Publication type:
- Article
CNAseg—a novel framework for identification of copy number changes in cancer from second-generation sequencing data.
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- Bioinformatics, 2010, v. 26, n. 24, p. 3051, doi. 10.1093/bioinformatics/btq587
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- Publication type:
- Article
The cost of reducing starting RNA quantity for Illumina BeadArrays: A bead-level dilution experiment.
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- BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-540
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- Publication type:
- Article
The microRNA miR-124 controls gene expression in the sensory nervous system of Caenorhabditis elegans.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. 11, p. 3780, doi. 10.1093/nar/gkq083
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- Publication type:
- Article
CNAnova: a new approach for finding recurrent copy number abnormalities in cancer SNP microarray data.
- Published in:
- Bioinformatics, 2010, v. 26, n. 11, p. 1395, doi. 10.1093/bioinformatics/btq145
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- Publication type:
- Article
A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. 3, p. e17, doi. 10.1093/nar/gkp942
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- Publication type:
- Article
Identification and correction of previouslyunreported spatial phenomena using raw IlluminaBeadArray data.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 208, doi. 10.1186/1471-2105-11-208
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- Publication type:
- Article
Data analysis issues for allele-specific expression using Illumina's GoldenGate assay.
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- BMC Bioinformatics, 2010, v. 11, p. 280, doi. 10.1186/1471-2105-11-280
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- Publication type:
- Article
High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta.
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- BMC Genetics, 2010, v. 11, p. 25, doi. 10.1186/1471-2156-11-25
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- Publication type:
- Article
The cost of reducing starting RNA quantity for Illumina BeadArrays: A bead-level dilution experiment.
- Published in:
- BMC Genomics, 2010, v. 11, p. 540, doi. 10.1186/1471-2164-11-540
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- Publication type:
- Article
Genome-wide analysis of a G-quadruplex-specific single-chain antibody that regulates gene expression.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. 20, p. 6716, doi. 10.1093/nar/gkp740
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- Publication type:
- Article
R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.
- Published in:
- Bioinformatics, 2009, v. 25, n. 19, p. 2621, doi. 10.1093/bioinformatics/btp470
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- Publication type:
- Article
Hydrogen Peroxide Stimulates Activity and Alters Behavior in Drosophila melanogaster.
- Published in:
- PLoS ONE, 2009, v. 4, n. 10, p. 1, doi. 10.1371/journal.pone.0007580
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- Publication type:
- Article
Older individuals appear to acquire mitotically older colorectal cancers.
- Published in:
- Journal of Pathology, 2009, v. 217, n. 4, p. 483, doi. 10.1002/path.2506
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- Publication type:
- Article
Characterisation of microRNA expression in post-natal mouse mammary gland development.
- Published in:
- BMC Genomics, 2009, v. 10, p. 548, doi. 10.1186/1471-2164-10-548
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- Publication type:
- Article
The pitfalls of platform comparison: DNA copy numberarray technologies assessed.
- Published in:
- BMC Genomics, 2009, v. 10, p. 588, doi. 10.1186/1471-2164-10-588
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- Publication type:
- Article
Simultaneous tracking of movement and gene expression in multiple Drosophila melanogaster flies using GFP and DsRED fluorescent reporter transgenes.
- Published in:
- BMC Research Notes, 2009, v. 2, p. 1, doi. 10.1186/1756-0500-2-58
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- Publication type:
- Article