Works by Taubert, Martin

Results: 25

The economical lifestyle of CPR bacteria in groundwater allows little preference for environmental drivers.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00395-w

By:

Chaudhari, Narendrakumar M.;
Overholt, Will A.;
Figueroa-Gonzalez, Perla Abigail;
Taubert, Martin;
Bornemann, Till L. V.;
Probst, Alexander J.;
Hölzer, Martin;
Marz, Manja;
Küsel, Kirsten

Publication type:

Article

Comparison of methods for simultaneous identification of bacterial species and determination of metabolic activity by protein-based stable isotope probing (Protein-SIP) experiments.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2009, v. 23, n. 12, p. 1871, doi. 10.1002/rcm.4084

By:

Jehmlich, Nico;
Schmidt, Frank;
Taubert, Martin;
Seifert, Jana;
von Bergen, Martin;
Richnow, Hans-Hermann;
Vogt, Carsten

Publication type:

Article

Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy.

Published in:

Environmental Microbiology, 2019, v. 21, n. 10, p. 3780, doi. 10.1111/1462-2920.14728

By:

Taubert, Martin;
Grob, Carolina;
Crombie, Andrew;
Howat, Alexandra M.;
Burns, Oliver J.;
Weber, Miriam;
Lott, Christian;
Kaster, Anne‐Kristin;
Vollmers, John;
Jehmlich, Nico;
von Bergen, Martin;
Chen, Yin;
Murrell, John Colin

Publication type:

Article

Tracking active groundwater microbes with D2O labelling to understand their ecosystem function.

Published in:

Environmental Microbiology, 2018, v. 20, n. 1, p. 369, doi. 10.1111/1462-2920.14010

By:

Taubert, Martin;
Stöckel, Stephan;
Geesink, Patricia;
Girnus, Sophie;
Jehmlich, Nico;
Von Bergen, Martin;
Rösch, Petra;
Popp, Jürgen;
Küsel, Kirsten

Publication type:

Article

Methylamine as a nitrogen source for microorganisms from a coastal marine environment.

Published in:

Environmental Microbiology, 2017, v. 19, n. 6, p. 2246, doi. 10.1111/1462-2920.13709

By:

Taubert, Martin;
Grob, Carolina;
Howat, Alexandra M.;
Burns, Oliver J.;
Pratscher, Jennifer;
Jehmlich, Nico;
von Bergen, Martin;
Richnow, Hans H.;
Chen, Yin;
Murrell, J. Colin

Publication type:

Article

XoxF encoding an alternative methanol dehydrogenase is widespread in coastal marine environments.

Published in:

Environmental Microbiology, 2015, v. 17, n. 10, p. 3937, doi. 10.1111/1462-2920.12896

By:

Taubert, Martin;
Grob, Carolina;
Howat, Alexandra M.;
Burns, Oliver J.;
Dixon, Joanna L.;
Chen, Yin;
Murrell, J. Colin

Publication type:

Article

Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph.

Published in:

Environmental Microbiology, 2015, v. 17, n. 10, p. 4007, doi. 10.1111/1462-2920.12935

By:

Grob, Carolina;
Taubert, Martin;
Howat, Alexandra M.;
Burns, Oliver J.;
Dixon, Joanna L.;
Richnow, Hans H.;
Jehmlich, Nico;
von Bergen, Martin;
Chen, Yin;
Murrell, J. Colin

Publication type:

Article

Time resolved protein-based stable isotope probing (Protein-SIP) analysis allows quantification of induced proteins in substrate shift experiments.

Published in:

Proteomics, 2011, v. 11, n. 11, p. 2265, doi. 10.1002/pmic.201000788

By:

Taubert, Martin;
Jehmlich, Nico;
Vogt, Carsten;
Richnow, Hans H.;
Schmidt, Frank;
von Bergen, Martin;
Seifert, Jana

Publication type:

Article

Exploring the limits of robust detection of incorporation of C by mass spectrometry in protein-based stable isotope probing (protein-SIP).

Published in:

Analytical & Bioanalytical Chemistry, 2011, v. 401, n. 6, p. 1975, doi. 10.1007/s00216-011-5289-4

By:

Taubert, Martin;
Baumann, Sven;
Bergen, Martin;
Seifert, Jana

Publication type:

Article

Differential contribution of nitrifying prokaryotes to groundwater nitrification.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2023, v. 17, n. 10, p. 1601, doi. 10.1038/s41396-023-01471-4

By:

Krüger, Markus;
Chaudhari, Narendrakumar;
Thamdrup, Bo;
Overholt, Will A.;
Bristow, Laura A.;
Taubert, Martin;
Küsel, Kirsten;
Jehmlich, Nico;
von Bergen, Martin;
Herrmann, Martina

Publication type:

Article

Bolstering fitness via CO2 fixation and organic carbon uptake: mixotrophs in modern groundwater.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2022, v. 16, n. 4, p. 1153, doi. 10.1038/s41396-021-01163-x

By:

Taubert, Martin;
Overholt, Will A.;
Heinze, Beatrix M.;
Matanfack, Georgette Azemtsop;
Houhou, Rola;
Jehmlich, Nico;
von Bergen, Martin;
Rösch, Petra;
Popp, Jürgen;
Küsel, Kirsten

Publication type:

Article

Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 10, p. 1877, doi. 10.1038/ismej.2013.78

By:

von Bergen, Martin;
Jehmlich, Nico;
Taubert, Martin;
Vogt, Carsten;
Bastida, Felipe;
Herbst, Florian-Alexander;
Schmidt, Frank;
Richnow, Hans-Hermann;
Seifert, Jana

Publication type:

Article

Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 12, p. 2291, doi. 10.1038/ismej.2012.68

By:

Taubert, Martin;
Vogt, Carsten;
Wubet, Tesfaye;
Kleinsteuber, Sabine;
Tarkka, Mika T;
Harms, Hauke;
Buscot, François;
Richnow, Hans-Hermann;
von Bergen, Martin;
Seifert, Jana

Publication type:

Article

Protein-based stable isotope probing (protein-SIP) in functional metaproteomics.

Published in:

Mass Spectrometry Reviews, 2012, v. 31, n. 6, p. 683, doi. 10.1002/mas.21346

By:

Seifert, Jana;
Taubert, Martin;
Jehmlich, Nico;
Schmidt, Frank;
Völker, Uwe;
Vogt, Carsten;
Richnow, Hans-Hermann;
von Bergen, Martin

Publication type:

Article

Divergent microbial communities in groundwater and overlying soils exhibit functional redundancy for plant-polysaccharide degradation.

Published in:

PLoS ONE, 2019, v. 14, n. 3, p. 1, doi. 10.1371/journal.pone.0212937

By:

Taubert, Martin;
Stähly, Jan;
Kolb, Steffen;
Küsel, Kirsten

Publication type:

Article

Carbon fixation rates in groundwater similar to those in oligotrophic marine systems.

Published in:

Nature Geoscience, 2022, v. 15, n. 7, p. 561, doi. 10.1038/s41561-022-00968-5

By:

Overholt, Will A.;
Trumbore, Susan;
Xu, Xiaomei;
Bornemann, Till L. V.;
Probst, Alexander J.;
Krüger, Markus;
Herrmann, Martina;
Thamdrup, Bo;
Bristow, Laura A.;
Taubert, Martin;
Schwab, Valérie F.;
Hölzer, Martin;
Marz, Manja;
Küsel, Kirsten

Publication type:

Article

A brief history and popularity of methods and tools used to estimate micro‐evolutionary forces.

Published in:

Ecology & Evolution (20457758), 2021, v. 11, n. 20, p. 13723, doi. 10.1002/ece3.8076

By:

Kidner, Jonathan;
Theodorou, Panagiotis;
Engler, Jan O.;
Taubert, Martin;
Husemann, Martin

Publication type:

Article

Predominance of Cand. Patescibacteria in Groundwater Is Caused by Their Preferential Mobilization From Soils and Flourishing Under Oligotrophic Conditions.

Published in:

Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.01407

By:

Herrmann, Martina;
Wegner, Carl-Eric;
Taubert, Martin;
Geesink, Patricia;
Lehmann, Katharina;
Yan, Lijuan;
Lehmann, Robert;
Totsche, Kai Uwe;
Küsel, Kirsten

Publication type:

Article

Dark CO2 fixation by soil microbes contributes to soil organic matter formation in soils from an old growth deciduous forest.

Published in:

Geophysical Research Abstracts, 2019, v. 21, p. 1

By:

Akinyede, Rachael;
Taubert, Martin;
Schrumpf, Marion;
Trumbore, Susan;
Küsel, Kirsten

Publication type:

Article

Temperature sensitivity of dark CO2 fixation in temperate forest soils.

Published in:

Biogeosciences Discussions, 2022, p. 1, doi. 10.5194/bg-2022-90

By:

Akinyede, Rachael;
Taubert, Martin;
Schrumpf, Marion;
Trumbore, Susan;
Küsel, Kirsten

Publication type:

Article

Microbial community functioning during plant litter decomposition.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-11485-1

By:

Schroeter, Simon A.;
Eveillard, Damien;
Chaffron, Samuel;
Zoppi, Johanna;
Kampe, Bernd;
Lohmann, Patrick;
Jehmlich, Nico;
von Bergen, Martin;
Sanchez-Arcos, Carlos;
Pohnert, Georg;
Taubert, Martin;
Küsel, Kirsten;
Gleixner, Gerd

Publication type:

Article

Limitations in detection of N incorporation by mass spectrometry in protein-based stable isotope probing (protein-SIP).

Published in:

Analytical & Bioanalytical Chemistry, 2013, v. 405, n. 12, p. 3989, doi. 10.1007/s00216-013-6828-y

By:

Taubert, Martin;
Bergen, Martin;
Seifert, Jana

Publication type:

Article

Insights into Autotrophic Activities and Carbon Flow in Iron-Rich Pelagic Aggregates (Iron Snow).

Published in:

Microorganisms, 2021, v. 9, n. 7, p. 1368, doi. 10.3390/microorganisms9071368

By:

Li, Qianqian;
Cooper, Rebecca E.;
Wegner, Carl-Eric;
Taubert, Martin;
Jehmlich, Nico;
von Bergen, Martin;
Küsel, Kirsten

Publication type:

Article

Raman-Activated, Interactive Sorting of Isotope-Labeled Bacteria.

Published in:

Sensors (14248220), 2024, v. 24, n. 14, p. 4503, doi. 10.3390/s24144503

By:

Razi, Sepehr;
Tarcea, Nicolae;
Henkel, Thomas;
Ravikumar, Ramya;
Pistiki, Aikaterini;
Wagenhaus, Annette;
Girnus, Sophie;
Taubert, Martin;
Küsel, Kirsten;
Rösch, Petra;
Popp, Jürgen

Publication type:

Article

Temperature sensitivity of dark CO2 fixation in temperate forest soils.

Published in:

Biogeosciences, 2022, v. 19, n. 17, p. 4011, doi. 10.5194/bg-19-4011-2022

By:

Akinyede, Rachael;
Taubert, Martin;
Schrumpf, Marion;
Trumbore, Susan;
Küsel, Kirsten

Publication type:

Article

Works by Taubert, Martin

The economical lifestyle of CPR bacteria in groundwater allows little preference for environmental drivers.

Comparison of methods for simultaneous identification of bacterial species and determination of metabolic activity by protein-based stable isotope probing (Protein-SIP) experiments.

Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy.

Tracking active groundwater microbes with D<sub>2</sub>O labelling to understand their ecosystem function.

Methylamine as a nitrogen source for microorganisms from a coastal marine environment.

XoxF encoding an alternative methanol dehydrogenase is widespread in coastal marine environments.

Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph.

Time resolved protein-based stable isotope probing (Protein-SIP) analysis allows quantification of induced proteins in substrate shift experiments.

Exploring the limits of robust detection of incorporation of C by mass spectrometry in protein-based stable isotope probing (protein-SIP).

Differential contribution of nitrifying prokaryotes to groundwater nitrification.

Bolstering fitness via CO<sub>2</sub> fixation and organic carbon uptake: mixotrophs in modern groundwater.

Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology.

Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium.

Protein-based stable isotope probing (protein-SIP) in functional metaproteomics.

Divergent microbial communities in groundwater and overlying soils exhibit functional redundancy for plant-polysaccharide degradation.

Carbon fixation rates in groundwater similar to those in oligotrophic marine systems.

A brief history and popularity of methods and tools used to estimate micro‐evolutionary forces.

Predominance of Cand. Patescibacteria in Groundwater Is Caused by Their Preferential Mobilization From Soils and Flourishing Under Oligotrophic Conditions.

Dark CO2 fixation by soil microbes contributes to soil organic matter formation in soils from an old growth deciduous forest.

Temperature sensitivity of dark CO<sub>2</sub> fixation in temperate forest soils.

Microbial community functioning during plant litter decomposition.

Limitations in detection of N incorporation by mass spectrometry in protein-based stable isotope probing (protein-SIP).

Insights into Autotrophic Activities and Carbon Flow in Iron-Rich Pelagic Aggregates (Iron Snow).

Raman-Activated, Interactive Sorting of Isotope-Labeled Bacteria.

Temperature sensitivity of dark CO2 fixation in temperate forest soils.