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Prediction of protein-RNA interactions from single-cell transcriptomic data.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. 6, p. e31, doi. 10.1093/nar/gkae076
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- Publication type:
- Article
Predicting nuclear G-quadruplex RNA-binding proteins with roles in transcription and phase separation.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46731-9
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- Article
The structural properties of full-length annexin A11.
- Published in:
- Frontiers in Molecular Biosciences, 2024, p. 1, doi. 10.3389/fmolb.2024.1347741
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- Publication type:
- Article
Design of protein-binding peptides with controlled binding affinity: the case of SARS-CoV-2 receptor binding domain and angiotensin-converting enzyme 2 derived peptides.
- Published in:
- Frontiers in Molecular Biosciences, 2024, p. 1, doi. 10.3389/fmolb.2023.1332359
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- Publication type:
- Article
Improved discovery of RNA-binding protein binding sites in eCLIP data using DEWSeq.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. 1, p. e1, doi. 10.1093/nar/gkad998
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- Publication type:
- Article
RNA aptamer reveals nuclear TDP-43 pathology is an early aggregation event that coincides with STMN-2 cryptic splicing and precedes clinical manifestation in ALS.
- Published in:
- Acta Neuropathologica, 2024, v. 147, n. 1, p. 1, doi. 10.1007/s00401-024-02705-1
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- Publication type:
- Article
Single-photon microscopy to study biomolecular condensates.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43969-7
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- Article
RNA sequestration driven by amyloid formation: the alpha synuclein case.
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- Nucleic Acids Research, 2023, v. 51, n. 21, p. 11466, doi. 10.1093/nar/gkad857
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- Publication type:
- Article
Transmembrane Helices 7 and 8 Confer Aggregation Sensitivity to the Cystic Fibrosis Transmembrane Conductance Regulator.
- Published in:
- International Journal of Molecular Sciences, 2023, v. 24, n. 21, p. 15741, doi. 10.3390/ijms242115741
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- Publication type:
- Article
LINE-1 regulates cortical development by acting as long non-coding RNAs.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40743-7
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- Publication type:
- Article
A high‐throughput approach to predict A‐to‐I effects on RNA structure indicates a change of double‐stranded content in noncoding RNAs.
- Published in:
- IUBMB Life, 2023, v. 75, n. 5, p. 411, doi. 10.1002/iub.2673
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- Publication type:
- Article
FUS Alters circRNA Metabolism in Human Motor Neurons Carrying the ALS-Linked P525L Mutation.
- Published in:
- International Journal of Molecular Sciences, 2023, v. 24, n. 4, p. 3181, doi. 10.3390/ijms24043181
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- Publication type:
- Article
TGS1 impacts snRNA 3′-end processing, ameliorates survival motor neuron-dependent neurological phenotypes in vivo and prevents neurodegeneration.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. 21, p. 12400, doi. 10.1093/nar/gkac659
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- Publication type:
- Article
Probing TDP-43 condensation using an in silico designed aptamer.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30944-x
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- Publication type:
- Article
Thermometer: a webserver to predict protein thermal stability.
- Published in:
- Bioinformatics, 2022, v. 38, n. 7, p. 2060, doi. 10.1093/bioinformatics/btab868
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- Publication type:
- Article
Prediction of Time Series Gene Expression and Structural Analysis of Gene Regulatory Networks Using Recurrent Neural Networks.
- Published in:
- Entropy, 2022, v. 24, n. 2, p. 141, doi. 10.3390/e24020141
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- Publication type:
- Article
Identification of long non-coding RNAs and RNA binding proteins in breast cancer subtypes.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-021-04664-z
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- Publication type:
- Article
New lessons on TDP‐43 from old N. furzeri killifish.
- Published in:
- Aging Cell, 2022, v. 21, n. 1, p. 1, doi. 10.1111/acel.13517
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- Publication type:
- Article
Machine learning methods applied to genotyping data capture interactions between single nucleotide variants in late onset Alzheimer's disease.
- Published in:
- Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring, 2022, v. 14, n. 1, p. 1, doi. 10.1002/dad2.12300
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- Publication type:
- Article
A Computational Approach to Investigate TDP-43 RNA-Recognition Motif 2 C-Terminal Fragments Aggregation in Amyotrophic Lateral Sclerosis.
- Published in:
- Biomolecules (2218-273X), 2021, v. 11, n. 12, p. 1905, doi. 10.3390/biom11121905
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- Article
Posttranscriptional regulation of colonic epithelial repair by RNA binding protein IMP1/IGF2BP1.
- Published in:
- EMBO Reports, 2021, v. 22, n. 8, p. 1, doi. 10.15252/embr.202153324
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- Publication type:
- Article
Matrix-screening reveals a vast potential for direct protein-protein interactions among RNA binding proteins.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. 12, p. 6702, doi. 10.1093/nar/gkab490
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- Publication type:
- Article
catRAPID omics v2.0: going deeper and wider in the prediction of protein–RNA interactions.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. W1, p. W72, doi. 10.1093/nar/gkab393
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- Publication type:
- Article
The seesaw between normal function and protein aggregation: How functional interactions may increase protein solubility.
- Published in:
- BioEssays, 2021, v. 43, n. 6, p. 1, doi. 10.1002/bies.202100031
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- Article
RNA‐protein interactions: Central players in coordination of regulatory networks.
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- BioEssays, 2021, v. 43, n. 2, p. 1, doi. 10.1002/bies.202000118
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- Article
RNA as the stone guest of protein aggregation.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. 21, p. 11880, doi. 10.1093/nar/gkaa822
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- Publication type:
- Article
Structural analysis of SARS-CoV-2 genome and predictions of the human interactome.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. 20, p. 11270, doi. 10.1093/nar/gkaa864
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- Publication type:
- Article
The protective role of m<sup>1</sup>A during stress-induced granulation.
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- Journal of Molecular Cell Biology, 2020, v. 12, n. 11, p. 870, doi. 10.1093/jmcb/mjaa023
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- Publication type:
- Article
RNA-binding and prion domains: the Yin and Yang of phase separation.
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- Nucleic Acids Research, 2020, v. 48, n. 17, p. 9491, doi. 10.1093/nar/gkaa681
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- Publication type:
- Article
Zooming in on protein--RNA interactions: a multi-level workflow to identify interaction partners.
- Published in:
- Biochemical Society Transactions, 2020, v. 48, n. 4, p. 1529, doi. 10.1042/BST20191059
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- Article
Transcriptomic differences in MSA clinical variants.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-66221-4
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- Publication type:
- Article
Long non‐coding RNA uc.291 controls epithelial differentiation by interfering with the ACTL6A/BAF complex.
- Published in:
- EMBO Reports, 2020, v. 21, n. 3, p. 1, doi. 10.15252/embr.201846734
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- Publication type:
- Article
CROSSalive: a web server for predicting the in vivo structure of RNA molecules.
- Published in:
- Bioinformatics, 2020, v. 36, n. 3, p. 940, doi. 10.1093/bioinformatics/btz666
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- Publication type:
- Article
BacFITBase: a database to assess the relevance of bacterial genes during host infection.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. D1, p. D511, doi. 10.1093/nar/gkz931
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- Publication type:
- Article
A metastable subproteome underlies inclusion formation in muscle proteinopathies.
- Published in:
- Acta Neuropathologica Communications, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40478-019-0853-9
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- Publication type:
- Article
The mutational landscape of a prion-like domain.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12101-z
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- Publication type:
- Article
Insights on protein thermal stability: a graph representation of molecular interactions.
- Published in:
- Bioinformatics, 2019, v. 35, n. 15, p. 2569, doi. 10.1093/bioinformatics/bty1011
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- Publication type:
- Article
RNA structure drives interaction with proteins.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-10923-5
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- Publication type:
- Article
Posttranscriptional regulation of colonic epithelial repair by RNA binding protein IMP1/IGF2BP1.
- Published in:
- EMBO Reports, 2019, v. 20, n. 6, p. 1, doi. 10.15252/embr.201847074
- By:
- Publication type:
- Article
The moonlighting RNA-binding activity of cytosolic serine hydroxymethyltransferase contributes to control compartmentalization of serine metabolism.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 8, p. 4240, doi. 10.1093/nar/gkz129
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- Publication type:
- Article
RNAct: Protein–RNA interaction predictions for model organisms with supporting experimental data.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. D1, p. D601, doi. 10.1093/nar/gky967
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- Publication type:
- Article
Protein Syndesmos is a novel RNA-binding protein that regulates primary cilia formation.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. 22, p. 12067, doi. 10.1093/nar/gky873
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- Publication type:
- Article
Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. 2, p. 917, doi. 10.1093/nar/gkx1169
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- Publication type:
- Article
Discovering the 3' UTR-mediated regulation of alpha-synuclein.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 22, p. 12888, doi. 10.1093/nar/gkx1048
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- Publication type:
- Article
omiXcore: a web server for prediction of protein interactions with large RNA.
- Published in:
- Bioinformatics, 2017, v. 33, n. 19, p. 3104, doi. 10.1093/bioinformatics/btx361
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- Publication type:
- Article
Neuronal intranuclear (hyaline) inclusion disease and fragile X-associated tremor/ataxia syndrome: a morphological and molecular dilemma.
- Published in:
- 2017
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- Publication type:
- letter
A high-throughput approach to profile RNA structure.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 5, p. 1, doi. 10.1093/nar/gkw1094
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- Publication type:
- Article
Advances in the characterization of RNA-binding proteins.
- Published in:
- Wiley Interdisciplinary Reviews: RNA, 2016, v. 7, n. 6, p. 793, doi. 10.1002/wrna.1378
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- Publication type:
- Article
Molecular Pathophysiology of Fragile X-Associated Tremor/Ataxia Syndrome and Perspectives for Drug Development.
- Published in:
- Cerebellum, 2016, v. 15, n. 5, p. 599, doi. 10.1007/s12311-016-0800-2
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- Publication type:
- Article
Non-random distribution of homo-repeats: links with biological functions and human diseases.
- Published in:
- Scientific Reports, 2016, p. 26941, doi. 10.1038/srep26941
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- Publication type:
- Article