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Response to "On the impact of incomplete taxon sampling on the relative timing of gene transfer events".
- Published in:
- 2024
- By:
- Publication type:
- Letter to the Editor
PhylteR: Efficient Identification of Outlier Sequences in Phylogenomic Datasets.
- Published in:
- Molecular Biology & Evolution, 2023, v. 40, n. 11, p. 1, doi. 10.1093/molbev/msad234
- By:
- Publication type:
- Article
Phylogenetic reconciliation.
- Published in:
- PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010621
- By:
- Publication type:
- Article
Ghost lineages can invalidate or even reverse findings regarding gene flow.
- Published in:
- PLoS Biology, 2022, v. 20, n. 9, p. 1, doi. 10.1371/journal.pbio.3001776
- By:
- Publication type:
- Article
A hapless mathematical contribution to biology: Chromosome inversions in Drosophila, 1937–1941.
- Published in:
- History & Philosophy of the Life Sciences, 2022, v. 44, n. 3, p. 1, doi. 10.1007/s40656-022-00514-x
- By:
- Publication type:
- Article
Ghost Lineages Highly Influence the Interpretation of Introgression Tests.
- Published in:
- Systematic Biology, 2022, v. 71, n. 5, p. 1147, doi. 10.1093/sysbio/syac011
- By:
- Publication type:
- Article
Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation.
- Published in:
- Bioinformatics, 2022, v. 38, n. 8, p. 2350, doi. 10.1093/bioinformatics/btac062
- By:
- Publication type:
- Article
Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.
- Published in:
- Bioinformatics, 2020, v. 36, n. 18, p. 4822, doi. 10.1093/bioinformatics/btaa615
- By:
- Publication type:
- Article
Zombi: a phylogenetic simulator of trees, genomes and sequences that accounts for dead linages.
- Published in:
- Bioinformatics, 2020, v. 36, n. 4, p. 1286, doi. 10.1093/bioinformatics/btz710
- By:
- Publication type:
- Article
Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies.
- Published in:
- BMC Biology, 2020, v. 18, n. 1, p. 1, doi. 10.1186/s12915-019-0728-3
- By:
- Publication type:
- Article
Gene tree species tree reconciliation with gene conversion.
- Published in:
- Journal of Mathematical Biology, 2019, v. 78, n. 6, p. 1981, doi. 10.1007/s00285-019-01331-w
- By:
- Publication type:
- Article
Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes.
- Published in:
- BMC Genomics, 2018, v. 19, p. 131, doi. 10.1186/s12864-018-4466-7
- By:
- Publication type:
- Article
Algorithms for computing the double cut and join distance on both gene order and intergenic sizes.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0107-y
- By:
- Publication type:
- Article
DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies.
- Published in:
- Genome Biology & Evolution, 2017, v. 9, n. 5, p. 1312, doi. 10.1093/gbe/evx069
- By:
- Publication type:
- Article
Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses.
- Published in:
- Bioinformatics, 2017, v. 33, n. 7, p. 980, doi. 10.1093/bioinformatics/btw778
- By:
- Publication type:
- Article
Genome rearrangements with indels in intergenes restrict the scenario space.
- Published in:
- BMC Bioinformatics, 2016, v. 17, p. 225, doi. 10.1186/s12859-016-1264-6
- By:
- Publication type:
- Article
Efficient Gene Tree Correction Guided by Genome Evolution.
- Published in:
- PLoS ONE, 2016, v. 11, n. 8, p. 1, doi. 10.1371/journal.pone.0159559
- By:
- Publication type:
- Article
Breaking Good: Accounting for Fragility of Genomic Regions in Rearrangement Distance Estimation.
- Published in:
- Genome Biology & Evolution, 2016, v. 8, n. 5, p. 1427, doi. 10.1093/gbe/evw083
- By:
- Publication type:
- Article
Moments of genome evolution by Double Cut-and-Join.
- Published in:
- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S14-S7
- By:
- Publication type:
- Article
Probabilistic modeling of the evolution of gene synteny within reconciled phylogenies.
- Published in:
- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S14-S5
- By:
- Publication type:
- Article
Ancestral gene synteny reconstruction improves extant species scaffolding.
- Published in:
- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S10-S11
- By:
- Publication type:
- Article
Reconstruction of an ancestral Yersinia pestis genome and comparison with an ancient sequence.
- Published in:
- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S10-S9
- By:
- Publication type:
- Article
Karyotype and Gene Order Evolution from Reconstructed Extinct Ancestors Highlight Contrasts in Genome Plasticity of Modern Rosid Crops.
- Published in:
- Genome Biology & Evolution, 2015, v. 7, n. 3, p. 735, doi. 10.1093/gbe/evv014
- By:
- Publication type:
- Article
The Inference of Gene Trees with Species Trees.
- Published in:
- Systematic Biology, 2015, v. 64, n. 1, p. e42
- By:
- Publication type:
- Article
FPSAC: fast phylogenetic scaffolding of ancient contigs.
- Published in:
- Bioinformatics, 2013, v. 29, n. 23, p. 2987, doi. 10.1093/bioinformatics/btt527
- By:
- Publication type:
- Article
Efficient Exploration of the Space of Reconciled Gene Trees.
- Published in:
- Systematic Biology, 2013, v. 62, n. 6, p. 901
- By:
- Publication type:
- Article
Gene tree correction guided by orthology.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-14-S15-S5
- By:
- Publication type:
- Article
Lateral gene transfer, rearrangement, reconciliation.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-14-S15-S4
- By:
- Publication type:
- Article
Lateral Gene Transfer from the Dead.
- Published in:
- Systematic Biology, 2013, v. 62, n. 3, p. 386, doi. 10.1093/sysbio/syt003
- By:
- Publication type:
- Article
ANGES: reconstructing ANcestral GEnomeS maps.
- Published in:
- Bioinformatics, 2012, v. 28, n. 18, p. 2388, doi. 10.1093/bioinformatics/bts457
- By:
- Publication type:
- Article
Evolution of gene neighborhoods within reconciled phylogenies.
- Published in:
- Bioinformatics, 2012, v. 28, n. 18, p. i382
- By:
- Publication type:
- Article
Linearization of ancestral multichromosomal genomes.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. Suppl 19, p. 1, doi. 10.1186/1471-2105-13-S19-S11
- By:
- Publication type:
- Article
Reconstructing the architecture of the ancestral amniote genome.
- Published in:
- Bioinformatics, 2011, v. 27, n. 19, p. 2664, doi. 10.1093/bioinformatics/btr461
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- Publication type:
- Article
Mapping ancestral genomes with massive gene loss: A matrix sandwich problem.
- Published in:
- Bioinformatics, 2011, v. 27, n. 13, p. i257, doi. 10.1093/bioinformatics/btr224
- By:
- Publication type:
- Article
Bayesian sampling of genomic rearrangement scenarios via double cut and join.
- Published in:
- Bioinformatics, 2010, v. 26, n. 24, p. 3012, doi. 10.1093/bioinformatics/btq574
- By:
- Publication type:
- Article
Cassis: detection of genomic rearrangement breakpoints.
- Published in:
- Bioinformatics, 2010, v. 26, n. 15, p. 1897, doi. 10.1093/bioinformatics/btq301
- By:
- Publication type:
- Article
Detecting lateral gene transfers by statisticalreconciliation of phylogenetic forests.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 324, doi. 10.1186/1471-2105-11-324
- By:
- Publication type:
- Article
Multichromosomal median and halving problems under different genomic distances.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-120
- By:
- Publication type:
- Article
Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation.
- Published in:
- BMC Genomics, 2009, v. 10, p. 335, doi. 10.1186/1471-2164-10-335
- By:
- Publication type:
- Article
Footprints of Inversions at Present and Past Pseudoautosomal Boundaries in Human Sex Chromosomes.
- Published in:
- Genome Biology & Evolution, 2009, v. 1, p. 56, doi. 10.1093/gbe/evp006
- By:
- Publication type:
- Article
A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and Its Application to Mammalian Genomes.
- Published in:
- PLoS Computational Biology, 2008, v. 4, n. 11, p. 1, doi. 10.1371/journal.pcbi.1000234
- By:
- Publication type:
- Article
Precise detection of rearrangement breakpoints in mammalian chromosomes.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-286
- By:
- Publication type:
- Article
On Metric Generators of Graphs.
- Published in:
- Mathematics of Operations Research, 2004, v. 29, n. 2, p. 383, doi. 10.1287/moor.1030.0070
- By:
- Publication type:
- Article