Found: 71
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Clonal reconstruction from time course genomic sequencing data.
- Published in:
- BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6328-3
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- Publication type:
- Article
Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis.
- Published in:
- eLife, 2015, p. 1, doi. 10.7554/eLife.09591
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- Publication type:
- Article
Algorithmic approaches to clonal reconstruction in heterogeneous cell populations.
- Published in:
- Quantitative Biology, 2019, v. 7, n. 4, p. 255, doi. 10.1007/s40484-019-0188-3
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- Publication type:
- Article
Insertion sequence-caused large-scale rearrangements in the genome of Escherichia coli.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 15, p. 7109, doi. 10.1093/nar/gkw647
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- Publication type:
- Article
DNA sequence templates adjacent nucleosome and ORC sites at gene amplification origins in Drosophila.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. 18, p. 8746, doi. 10.1093/nar/gkv766
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- Publication type:
- Article
FragGeneScan: predicting genes in short and error-prone reads.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. 20, p. e191, doi. 10.1093/nar/gkq747
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- Publication type:
- Article
RNAMotifScan: automatic identification of RNA structural motifs using secondary structural alignment.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. 18, p. e176, doi. 10.1093/nar/gkq672
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- Publication type:
- Article
MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. 21, p. e143, doi. 10.1093/nar/gkp752
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- Publication type:
- Article
MOGONET integrates multi-omics data using graph convolutional networks allowing patient classification and biomarker identification.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23774-w
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- Publication type:
- Article
Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution.
- Published in:
- Nature Genetics, 2007, v. 39, n. 11, p. 1361, doi. 10.1038/ng.2007.9
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- Publication type:
- Article
SpecEncoder: deep metric learning for accurate peptide identification in proteomics.
- Published in:
- Bioinformatics, 2024, v. 40, p. i257, doi. 10.1093/bioinformatics/btae220
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- Publication type:
- Article
3DMolMS: prediction of tandem mass spectra from 3D molecular conformations.
- Published in:
- Bioinformatics, 2023, v. 39, n. 6, p. 1, doi. 10.1093/bioinformatics/btad354
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- Publication type:
- Article
Haplotype-based membership inference from summary genomic data.
- Published in:
- Bioinformatics, 2021, v. 37, p. i161, doi. 10.1093/bioinformatics/btab305
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- Publication type:
- Article
Accurate de novo peptide sequencing using fully convolutional neural networks.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43010-x
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- Publication type:
- Article
Testosterone Affects Neural Gene Expression Differently in Male and Female Juncos: A Role for Hormones in Mediating Sexual Dimorphism and Conflict.
- Published in:
- PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0061784
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- Publication type:
- Article
Phylogenetic Diversity and Environment-Specific Distributions of Glycosyl Hydrolase Family 10 Xylanases in Geographically Distant Soils.
- Published in:
- PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0043480
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- Publication type:
- Article
SAP--A Sequence Mapping and Analyzing Program for Long Sequence Reads Alignment and Accurate Variants Discovery.
- Published in:
- PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0042887
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- Publication type:
- Article
A community assessment of privacy preserving techniques for human genomes.
- Published in:
- BMC Medical Informatics & Decision Making, 2014, v. 14, n. 1, p. S1, doi. 10.1186/1472-6947-14-S1-S1
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- Publication type:
- Article
Extending the coverage of spectral libraries: A neighbor-based approach to predicting intensities of peptide fragmentation spectra.
- Published in:
- Proteomics, 2013, v. 13, n. 5, p. 756, doi. 10.1002/pmic.201100670
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- Publication type:
- Article
On the estimation of false positives in peptide identifications using decoy search strategy.
- Published in:
- Proteomics, 2009, v. 9, n. 1, p. 194, doi. 10.1002/pmic.200800330
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- Publication type:
- Article
A community effort to protect genomic data sharing, collaboration and outsourcing.
- Published in:
- NPJ Genomic Medicine, 2017, v. 2, n. 1, p. N.PAG, doi. 10.1038/s41525-017-0036-1
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- Publication type:
- Article
Identification of N‐terminal protein processing sites by chemical labeling mass spectrometry.
- Published in:
- Rapid Communications in Mass Spectrometry: RCM, 2019, v. 33, n. 11, p. 1015, doi. 10.1002/rcm.8435
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- Publication type:
- Article
Automated annotation and quantitation of glycans by liquid chromatography/electrospray ionization mass spectrometric analysis using the MultiGlycan-ESI computational tool.
- Published in:
- Rapid Communications in Mass Spectrometry: RCM, 2015, v. 29, n. 1, p. 135, doi. 10.1002/rcm.7093
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- Publication type:
- Article
De novo identification of LTR retrotransposons in eukaryotic genomes.
- Published in:
- BMC Genomics, 2007, v. 8, p. 1, doi. 10.1186/1471-2164-8-90
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- Publication type:
- Article
Gene finding in metatranscriptomic sequences.
- Published in:
- BMC Bioinformatics, 2014, v. 15, p. 1, doi. 10.1186/1471-2105-15-S9-S8
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- Publication type:
- Article
Detecting structural variants involving repetitive elements: capturing transposition events of IS elements in the genome of Escherichia coli.
- Published in:
- 2012
- By:
- Publication type:
- Abstract
RAPSearch: a fast protein similarity search tool for short reads.
- Published in:
- 2011
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- Publication type:
- Product Review
A Maximum-Likelihood Approach to Estimating the Insertion Frequencies of Transposable Elements from Population Sequencing Data.
- Published in:
- Molecular Biology & Evolution, 2018, v. 35, n. 10, p. 2560, doi. 10.1093/molbev/msy152
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- Publication type:
- Article
Background Mutational Features of the Radiation-Resistant Bacterium Deinococcus radiodurans.
- Published in:
- Molecular Biology & Evolution, 2015, v. 32, n. 9, p. 2383, doi. 10.1093/molbev/msv119
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- Publication type:
- Article
The evolving privacy and security concerns for genomic data analysis and sharing as observed from the iDASH competition.
- Published in:
- 2022
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- Publication type:
- journal article
Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks.
- Published in:
- 2017
- By:
- Publication type:
- journal article
Choosing blindly but wisely: differentially private solicitation of DNA datasets for disease marker discovery.
- Published in:
- Journal of the American Medical Informatics Association, 2015, v. 22, n. 1, p. 100, doi. 10.1136/amiajnl-2014-003043
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- Publication type:
- Article
Insertion sequence elements-mediated structural variations in bacterial genomes.
- Published in:
- Mobile DNA, 2018, v. 9, n. 1, p. N.PAG, doi. 10.1186/s13100-018-0134-3
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- Publication type:
- Article
iDASH secure genome analysis competition 2017.
- Published in:
- BMC Medical Genomics, 2018, v. 11, n. 4, p. N.PAG, doi. 10.1186/s12920-018-0396-0
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- Publication type:
- Article
Protecting genomic data analytics in the cloud: state of the art and opportunities.
- Published in:
- BMC Medical Genomics, 2016, v. 9, p. 1, doi. 10.1186/s12920-016-0224-3
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- Publication type:
- Article
Probabilistic Inference of Biochemical Reactions in Microbial Communities from Metagenomic Sequences.
- Published in:
- PLoS Computational Biology, 2013, v. 9, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002981
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- Publication type:
- Article
A Fast and Memory‐Efficient Spectral Library Search Algorithm Using Locality‐Sensitive Hashing.
- Published in:
- Proteomics, 2020, v. 20, n. 21/22, p. 1, doi. 10.1002/pmic.202000002
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- Publication type:
- Article
Non-Specific Signal Peptidase Processing of Extracellular Proteins in Staphylococcus aureus N315.
- Published in:
- Proteomes, 2023, v. 11, n. 1, p. 8, doi. 10.3390/proteomes11010008
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- Publication type:
- Article
CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes.
- Published in:
- Genome Biology, 2013, v. 14, n. 4, p. 1, doi. 10.1186/gb-2013-14-4-r40
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- Publication type:
- Article
Insertion Polymorphisms of Mobile Genetic Elements in Sexual and Asexual Populations of Daphnia pulex.
- Published in:
- Genome Biology & Evolution, 2017, v. 9, n. 2, p. 362, doi. 10.1093/gbe/evw302
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- Publication type:
- Article
Independent Mammalian Genome Contractions Following the KT Boundary.
- Published in:
- Genome Biology & Evolution, 2009, v. 1, p. 2, doi. 10.1093/gbe/evp007
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- Publication type:
- Article
Improving confidence in detection and characterization of protein N-glycosylation sites and microheterogeneity.
- Published in:
- Rapid Communications in Mass Spectrometry: RCM, 2011, v. 25, n. 14, p. 2007, doi. 10.1002/rcm.5059
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- Publication type:
- Article
Mapping site-specific protein N-glycosylations through liquid chromatography/mass spectrometry and targeted tandem mass spectrometry.
- Published in:
- Rapid Communications in Mass Spectrometry: RCM, 2010, v. 24, n. 7, p. 965, doi. 10.1002/rcm.4474
- By:
- Publication type:
- Article
ProteinQuant Suite: a bundle of automated software tools for label-free quantitative proteomics.
- Published in:
- Rapid Communications in Mass Spectrometry: RCM, 2008, v. 22, n. 23, p. 3823, doi. 10.1002/rcm.3781
- By:
- Publication type:
- Article
A computational approach to characterizing bond linkages of glycan isomers using matrix-assisted laser desorption/ionization tandem time-of-flight mass spectrometry.
- Published in:
- Rapid Communications in Mass Spectrometry: RCM, 2008, v. 22, n. 22, p. 3561, doi. 10.1002/rcm.3765
- By:
- Publication type:
- Article
iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching.
- Published in:
- 2020
- By:
- Publication type:
- Editorial
A Graph-Centric Approach for Metagenome-Guided Peptide and Protein Identification in Metaproteomics.
- Published in:
- PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005224
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- Publication type:
- Article
A machine-learning approach to combined evidence validation of genome assemblies.
- Published in:
- Bioinformatics, 2008, v. 24, n. 6, p. 744, doi. 10.1093/bioinformatics/btm608
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- Publication type:
- Article
Fast and accurate identification of semi-tryptic peptides in shotgun proteomics.
- Published in:
- Bioinformatics, 2008, v. 24, n. 1, p. 102, doi. 10.1093/bioinformatics/btm545
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- Publication type:
- Article
dPattern: transcription factor binding site (TFBS) discovery in human genome using a discriminative pattern analysis.
- Published in:
- Bioinformatics, 2007, v. 23, n. 19, p. 2619, doi. 10.1093/bioinformatics/btm288
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- Publication type:
- Article