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CMRF: analyzing differential gene regulation in two group perturbation experiments.
- Published in:
- BMC Genomics, 2012, v. 13, n. Suppl 2, p. 1, doi. 10.1186/1471-2164-13-S2-S2
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- Article
Topologically associating domains are stable units of replication-timing regulation.
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- Nature, 2014, v. 515, n. 7527, p. 402, doi. 10.1038/nature13986
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- Article
Motifs in the assembly of food web networks.
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- Oikos, 2016, v. 125, n. 4, p. 480, doi. 10.1111/oik.02532
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- Article
Counting motifs in dynamic networks.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0533-6
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- Article
Identifying the topology of signaling networks from partial RNAi data.
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- BMC Systems Biology, 2016, v. 10, p. 231, doi. 10.1186/s12918-016-0301-4
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- Publication type:
- Article
A scalable method for discovering significant subnetworks.
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- BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S4-S3
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- Article
A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification.
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- EMBO Journal, 2011, v. 30, n. 5, p. 882, doi. 10.1038/emboj.2010.363
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- Article
Identification of co-evolving temporal networks.
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- BMC Genomics, 2019, v. 20, n. 6, p. N.PAG, doi. 10.1186/s12864-019-5719-9
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- Article
Reference-based indexing for metric spaces with costly distance measures.
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- VLDB Journal International Journal on Very Large Data Bases, 2008, v. 17, n. 5, p. 1231
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- Article
Network-based Prediction of Cancer under Genetic Storm.
- Published in:
- Cancer Informatics, 2014, n. 13, p. 15, doi. 10.4137/CIN.S14025
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- Article
Selected Research Articles from the 2019 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC).
- Published in:
- 2020
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- Publication type:
- Editorial
Aligning optical maps to de Bruijn graphs.
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- Bioinformatics, 2019, v. 35, n. 18, p. 3250, doi. 10.1093/bioinformatics/btz069
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- Article
Large scale analysis of signal reachability.
- Published in:
- Bioinformatics, 2014, v. 30, n. 12, p. i96, doi. 10.1093/bioinformatics/btu262
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- Article
Stability analysis of phylogenetic trees.
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- Bioinformatics, 2013, v. 29, n. 2, p. 166, doi. 10.1093/bioinformatics/bts657
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- Publication type:
- Article
RINQ: Reference-based Indexing for Network Queries.
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- Bioinformatics, 2011, v. 27, n. 13, p. i149
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- Publication type:
- Article
Inferring progression models for CGH data.
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- Bioinformatics, 2009, v. 25, n. 17, p. 2208, doi. 10.1093/bioinformatics/btp365
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- Publication type:
- Article
Classification and feature selection algorithms for multi-class CGH data.
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- Bioinformatics, 2008, v. 24, n. 13, p. i86, doi. 10.1093/bioinformatics/btn145
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- Publication type:
- Article
A novel genome-scale repeat finder geared towards transposons.
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- Bioinformatics, 2008, v. 24, n. 4, p. 468, doi. 10.1093/bioinformatics/btm613
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- Publication type:
- Article
QOMA: quasi-optimal multiple alignment of protein sequences.
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- Bioinformatics, 2007, v. 23, n. 2, p. 162
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- Publication type:
- Article
A Novel algorithm for identifying low-complexity regions in a protein sequence.
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- Bioinformatics, 2006, v. 22, n. 24, p. 2980, doi. 10.1093/bioinformatics/btl495
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- Article
Speeding up whole-genome alignment by indexing frequency vectors.
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- Bioinformatics, 2004, v. 20, n. 13, p. 2122, doi. 10.1093/bioinformatics/bth212
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- Publication type:
- Article
Metabolic network alignment in large scale by network compression.
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- BMC Bioinformatics, 2012, v. 13, n. Suppl 3, p. 1, doi. 10.1186/1471-2105-13-S3-S2
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- Article
A scalable method for identifying frequent subtrees in sets of large phylogenetic trees.
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- BMC Bioinformatics, 2012, v. 13, n. 1, p. 256, doi. 10.1186/1471-2105-13-256
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- Article
HIDEN: Hierarchical decomposition of regulatory networks.
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- BMC Bioinformatics, 2012, v. 13, n. 1, p. 250, doi. 10.1186/1471-2105-13-250
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- Publication type:
- Article
AMR-meta: a k-mer and metafeature approach to classify antimicrobial resistance from high-throughput short-read metagenomics data.
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- GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac029
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- Article
Metabolomic Analysis Reveals Extended Metabolic Consequences of Marginal Vitamin B-6 Deficiency in Healthy Human Subjects.
- Published in:
- PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0063544
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- Article
Scalable Steady State Analysis of Boolean Biological Regulatory Networks.
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- PLoS ONE, 2009, v. 4, n. 12, p. 1, doi. 10.1371/journal.pone.0007992
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- Article
Prediction of host-pathogen protein interactions by extended network model.
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- Turkish Journal of Biology, 2021, v. 45, n. 2, p. 138, doi. 10.3906/biy-2009-4
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- Publication type:
- Article
Identification of jointly correlated gene sets.
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- Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 5, p. N.PAG, doi. 10.1142/S021972001840019X
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- Publication type:
- Article
TOPAC:: ALIGNMENT OF GENE REGULATORY NETWORKS USING TOPOLOGY-AWARE COLORING.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2012, v. 10, n. 1, p. 1240001-1
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- Publication type:
- Article
A FAST AND ACCURATE ALGORITHM FOR COMPARATIVE ANALYSIS OF METABOLIC PATHWAYS.
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- Journal of Bioinformatics & Computational Biology, 2009, v. 7, n. 3, p. 389, doi. 10.1142/S0219720009004163
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- Publication type:
- Article
INDEX-BASED SIMILARITY SEARCH FOR PROTEIN STRUCTURE DATABASES.
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- Journal of Bioinformatics & Computational Biology, 2004, v. 2, n. 1, p. 99
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- Publication type:
- Article
Identification of large disjoint motifs in biological networks.
- Published in:
- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1271-7
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- Article
Signal reachability facilitates characterization of probabilistic signaling networks.
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- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S17-S6
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- Article
Indexing a protein-protein interaction network expedites network alignment.
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0756-0
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- Publication type:
- Article
Hierarchical decomposition of dynamically evolving regulatory networks.
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0529-9
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- Publication type:
- Article
QuTIE: quantum optimization for target identification by enzymes.
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- Bioinformatics Advances, 2023, v. 3, n. 1, p. 1, doi. 10.1093/bioadv/vbad112
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- Article
Morphological profiling for drug discovery in the era of deep learning.
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- Briefings in Bioinformatics, 2024, v. 25, n. 4, p. 1, doi. 10.1093/bib/bbae284
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- Article
Motif centrality in food web networks.
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- Journal of Complex Networks, 2017, v. 5, n. 4, p. 641, doi. 10.1093/comnet/cnw032
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- Article
Characterizing building blocks of resource constrained biological networks.
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- BMC Bioinformatics, 2019, v. 20, n. 12, p. 1, doi. 10.1186/s12859-019-2838-x
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- Publication type:
- Article
Selected research articles from the 2018 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC).
- Published in:
- 2019
- By:
- Publication type:
- Editorial
Shortest path counting in probabilistic biological networks.
- Published in:
- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2480-z
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- Publication type:
- Article
Integrating Domain Specific Knowledge and Network Analysis to Predict Drug Sensitivity of Cancer Cell Lines.
- Published in:
- PLoS ONE, 2016, v. 11, n. 9, p. 1, doi. 10.1371/journal.pone.0162173
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- Publication type:
- Article
ProMotE: an efficient algorithm for counting independent motifs in uncertain network topologies.
- Published in:
- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2236-9
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- Publication type:
- Article
Selected research articles from the 2017 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC).
- Published in:
- BMC Bioinformatics, 2018, v. 19, p. 1, doi. 10.1186/s12859-018-2058-9
- By:
- Publication type:
- Article
Selected research articles from the 2016 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC).
- Published in:
- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1521-3
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- Publication type:
- Article