Works by Talikka, Marja

Results: 34

NPA: an R package for computing network perturbation amplitudes using gene expression data and two-layer networks.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12859-019-3016-x

By:

Martin, Florian;
Gubian, Sylvain;
Talikka, Marja;
Hoeng, Julia;
Peitsch, Manuel C.

Publication type:

Article

Transcriptional profiling and targeted proteomics reveals common molecular changes associated with cigarette smoke-induced lung emphysema development in five susceptible mouse strains.

Published in:

Inflammation Research, 2015, v. 64, n. 7, p. 471, doi. 10.1007/s00011-015-0820-2

By:

Cabanski, Maciej;
Fields, Brett;
Boue, Stephanie;
Boukharov, Natalia;
DeLeon, Hector;
Dror, Natalie;
Geertz, Marcel;
Guedj, Emmanuel;
Iskandar, Anita;
Kogel, Ulrike;
Merg, Celine;
Peck, Michael;
Poussin, Carine;
Schlage, Walter;
Talikka, Marja;
Ivanov, Nikolai;
Hoeng, Julia;
Peitsch, Manuel

Publication type:

Article

Systems biology approach highlights mechanistic differences between Crohn's disease and ulcerative colitis.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-91124-3

By:

Ruiz Castro, Pedro A.;
Yepiskoposyan, Hasmik;
Gubian, Sylvain;
Calvino-Martin, Florian;
Kogel, Ulrike;
Renggli, Kasper;
Peitsch, Manuel C.;
Hoeng, Julia;
Talikka, Marja

Publication type:

Article

Mechanistic Evaluation of the Impact of Smoking and Chronic Obstructive Pulmonary Disease on the Nasal Epithelium.

Published in:

Clinical Medicine Insights: Circulatory, Respiratory & Pulmonary Medicine, 2017, n. 11, p. 1, doi. 10.1177/1179548417710928

By:

Talikka, Marja;
Martin, Florian;
Sewer, Alain;
Vuillaume, Grégory;
Leroy, Patrice;
Luettich, Karsta;
Chaudhary, Nveed;
Peck, Michael J.;
Peitsch, Manuel C.;
Hoeng, Julia

Publication type:

Article

A vascular biology network model focused on inflammatory processes to investigate atherogenesis and plaque instability.

Published in:

Journal of Translational Medicine, 2014, v. 12, n. 1, p. 1, doi. 10.1186/1479-5876-12-185

By:

De León, Héctor;
Boué, Stéphanie;
Schlage, Walter K.;
Boukharov, Natalia;
Westra, Jurjen W.;
Gebel, Stephan;
VanHooser, Aaron;
Talikka, Marja;
Fields, R. Brett;
Veljkovic, Emilija;
Peck, Michael J.;
Mathis, Carole;
Hoang, Vy;
Poussin, Carine;
Deehan, Renee;
Stolle, Katrin;
Hoeng, Julia;
Peitsch, Manuel C.

Publication type:

Article

A vascular biology network model focused on inflammatory processes to investigate atherogenesis and plaque instability.

Published in:

2014

By:

De León, Héctor;
Boué, Stéphanie;
Schlage, Walter K;
Boukharov, Natalia;
Westra, Jurjen W;
Gebel, Stephan;
VanHooser, Aaron;
Talikka, Marja;
Fields, R Brett;
Veljkovic, Emilija;
Peck, Michael J;
Mathis, Carole;
Hoang, Vy;
Poussin, Carine;
Deehan, Renee;
Stolle, Katrin;
Hoeng, Julia;
Peitsch, Manuel C

Publication type:

journal article

A Meta-Analysis of the Performance of a Blood-Based Exposure Response Gene Signature Across Clinical Studies on the Tobacco Heating System 2.2 (THS 2.2).

Published in:

Frontiers in Pharmacology, 2019, p. N.PAG, doi. 10.3389/fphar.2019.00198

By:

Martin, Florian;
Talikka, Marja;
Ivanov, Nikolai V.;
Haziza, Christelle;
Hoeng, Julia;
Peitsch, Manuel C.

Publication type:

Article

A Meta-Analysis of the Performance of a Blood-Based Exposure Response Gene Signature Across Clinical Studies on the Tobacco Heating System 2.2 (THS 2.2).

Published in:

Romanian Medical Journal, 2019, v. 66, n. 2, p. 174, doi. 10.3389/fphar.2019.00198

By:

Martin, Florian;
Talikka, Marja;
Ivanov, Nikolai V.;
Haziza, Christelle;
Julia Hoeng;
Peitsch, Manuel C.

Publication type:

Article

Evaluation of toxicity of aerosols from flavored e-liquids in Sprague–Dawley rats in a 90-day OECD inhalation study, complemented by transcriptomics analysis.

Published in:

Archives of Toxicology, 2020, v. 94, n. 6, p. 2179, doi. 10.1007/s00204-020-02759-6

By:

Ho, Jenny;
Sciuscio, Davide;
Kogel, Ulrike;
Titz, Bjoern;
Leroy, Patrice;
Vuillaume, Gregory;
Talikka, Marja;
Martin, Elyette;
Pospisil, Pavel;
Lebrun, Stefan;
Xia, Wenhao;
Lee, Tom;
Chng, Yun Xuan;
Phillips, Blaine W.;
Veljkovic, Emilija;
Guedj, Emmanuel;
Xiang, Yang;
Ivanov, Nikolai V.;
Peitsch, Manuel C.;
Hoeng, Julia

Publication type:

Article

Effects of Brief Integrated Information Literacy Education Sessions on Undergraduate Engineering Students' Interdisciplinary Research.

Published in:

New Review of Academic Librarianship, 2018, v. 24, n. 1, p. 48, doi. 10.1080/13614533.2017.1365735

By:

Talikka, Marja;
Soukka, Risto;
Eskelinen, Harri

Publication type:

Article

The reduction of DSS-induced colitis severity in mice exposed to cigarette smoke is linked to immune modulation and microbial shifts.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-60175-3

By:

Lo Sasso, Giuseppe;
Phillips, Blaine W.;
Sewer, Alain;
Battey, James N. D.;
Kondylis, Athanasios;
Talikka, Marja;
Titz, Bjoern;
Guedj, Emmanuel;
Peric, Dariusz;
Bornand, David;
Dulize, Remi;
Merg, Celine;
Corciulo, Maica;
Ouadi, Sonia;
Yanuar, Rendy;
Tung, Ching Keong;
Ivanov, Nikolai V.;
Peitsch, Manuel C.;
Hoeng, Julia

Publication type:

Article

A Meta-Analysis of the Performance of a Blood-Based Exposure Response Gene Signature Across Clinical Studies on the Tobacco Heating System 2.2 (THS 2.2).

Published in:

Romanian Journal of Medical Practice, 2019, v. 14, n. 2, p. 196

By:

Martin, Florian;
Talikka, Marja;
Ivanov, Nikolai V.;
Haziza, Christelle;
Hoeng, Julia;
Peitsch, Manuel C.

Publication type:

Article

Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2892, doi. 10.1093/bioinformatics/btt492

By:

Tarca, Adi L.;
Lauria, Mario;
Unger, Michael;
Bilal, Erhan;
Boue, Stephanie;
Kumar Dey, Kushal;
Hoeng, Julia;
Koeppl, Heinz;
Martin, Florian;
Meyer, Pablo;
Nandy, Preetam;
Norel, Raquel;
Peitsch, Manuel;
Rice, Jeremy J.;
Romero, Roberto;
Stolovitzky, Gustavo;
Talikka, Marja;
Xiang, Yang;
Zechner, Christoph

Publication type:

Article

In vitro systems toxicology approach to investigate the effects of repeated cigarette smoke exposure on human buccal and gingival organotypic epithelial tissue cultures.

Published in:

Toxicology Mechanisms & Methods, 2014, v. 24, n. 7, p. 470, doi. 10.3109/15376516.2014.943441

By:

Schlage, Walter K.;
Iskandar, Anita R.;
Kostadinova, Radina;
Xiang, Yang;
Sewer, Alain;
Majeed, Shoaib;
Kuehn, Diana;
Frentzel, Stefan;
Talikka, Marja;
Geertz, Marcel;
Mathis, Carole;
Ivanov, Nikolai;
Hoeng, Julia;
Peitsch, Manuel C.

Publication type:

Article

Causal biological network models for reactive astrogliosis: a systems approach to neuroinflammation.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-07651-0

By:

Barkhuizen, Melinda;
Renggli, Kasper;
Gubian, Sylvain;
Peitsch, Manuel C.;
Mathis, Carole;
Talikka, Marja

Publication type:

Article

Causal Biological Network Model for Inflammasome Signaling Applied for Interpreting Transcriptomic Changes in Various Inflammatory States.

Published in:

International Journal of Inflammation, 2022, p. 1, doi. 10.1155/2022/4071472

By:

Yepiskoposyan, Hasmik;
Peitsch, Manuel C.;
Talikka, Marja

Publication type:

Article

Novel approaches to develop community-built biological network models for potential drug discovery.

Published in:

Expert Opinion on Drug Discovery, 2017, v. 12, n. 8, p. 849, doi. 10.1080/17460441.2017.1335302

By:

Talikka, Marja;
Bukharov, Natalia;
Hayes, William S.;
Hofmann-Apitius, Martin;
Alexopoulos, Leonidas;
Peitsch, Manuel C.;
Hoeng, Julia

Publication type:

Article

Tobacco Alkaloid Assessment in a DSS-Induced Colitis Mouse Model with a Fully Humanized Immune System.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 7, p. 6419, doi. 10.3390/ijms24076419

By:

Verhaeghe, Catherine;
Talikka, Marja;
Sewer, Alain;
Sierro, Nicolas;
Auberson, Mehdi;
Peric, Dariusz;
Bornand, David;
Dulize, Remi;
Guedj, Emmanuel;
Nef, Patrick;
Tabruyn, Sebastien P.;
Hoeng, Julia;
Peitsch, Manuel C.;
Lo Sasso, Giuseppe

Publication type:

Article

Quantification of biological network perturbations for mechanistic insight and diagnostics using two-layer causal models.

Published in:

BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-238

By:

Martin, Florian;
Sewer, Alain;
Talikka, Marja;
Yang Xiang;
Hoeng, Julia;
Peitsch, Manuel C.

Publication type:

Article

Construction of biological networks from unstructured information based on a semi-automated curation workflow.

Published in:

Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav057

By:

Szostak, Justyna;
Ansari, Sam;
Madan, Sumit;
Fluck, Juliane;
Talikka, Marja;
Iskandar, Anita;
De Leon, Hector;
Hofmann-Apitius, Martin;
Peitsch, Manuel C.;
Hoeng, Julia

Publication type:

Article

Causal biological network database: a comprehensive platform of causal biological network models focused on the pulmonary and vascular systems.

Published in:

Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav030

By:

Boué, Stéphanie;
Talikka, Marja;
Westra, Jurjen Willem;
Hayes, William;
Di Fabio, Anselmo;
Park, Jennifer;
Schlage, Walter K.;
Sewer, Alain;
Fields, Brett;
Ansari, Sam;
Martin, Florian;
Veljkovic, Emilija;
Kenney, Renee;
Peitsch, Manuel C.;
Hoeng, Julia

Publication type:

Article

How Complex Should an In Vitro Model Be? Evaluation of a Complex 3D Alveolar Model with Transcriptomic Data and Computational Biological Network Models.

Published in:

Altex, 2019, v. 36, n. 3, p. 388, doi. 10.14573/altex.1811221

By:

Marescotti, Diego;
Serchi, Tommaso;
Luettich, Karsta;
Yang Xiang;
Moschini, Elisa;
Talikka, Marja;
Martin, Florian;
Baumer, Karine;
Dulize, Remi;
Peric, Dariusz;
Bornand, David;
Guedj, Emmanuel;
Sewer, Alain;
Cambier, Sebastien;
Contal, Servane;
Chary, Aline;
Gutleb, Arno C.;
Frentzel, Stefan;
Ivanov, Nikolai V.;
Peitsch, Manuel C.

Publication type:

Article

Identifying neuroinflammation in omics datasets with a computational biological network model of reactive astrogliosis.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2021, v. 17, n. 3, p. 1, doi. 10.1002/alz.051001

By:

Barkhuizen, Melinda;
Mathis, Carole;
Peitsch, Manuel C;
Talikka, Marja

Publication type:

Article

Effects of Cigarette Smoke, Cessation, and Switching to Two Heat-Not-Burn Tobacco Products on Lung Lipid Metabolism in C57BL/6 and Apoe<sup>-/-</sup> Mice-An Integrative Systems Toxicology Analysis.

Published in:

Toxicological Sciences, 2016, v. 149, n. 2, p. 441, doi. 10.1093/toxsci/kfv244

By:

Titz, Bjoern;
Boué, Stéphanie;
Phillips, Blaine;
Talikka, Marja;
Vihervaara, Terhi;
Schneider, Thomas;
Nury, Catherine;
Elamin, Ashraf;
Guedj, Emmanuel;
Peck, Michael J.;
Schlage, Walter K.;
Cabanski, Maciej;
Leroy, Patrice;
Vuillaume, Gregory;
Martin, Florian;
Martin, Nikolai V.;
Veljkovic, Emilija;
Kim Ekroos;
Laaksonen, Reijo;
Vanscheeuwijck, Patrick

Publication type:

Article

An 8-Month Systems Toxicology Inhalation/Cessation Study in Apoe<sup>-/-</sup> Mice to Investigate Cardiovascular and Respiratory Exposure Effects of a Candidate Modified Risk Tobacco Product, THS 2.2, Compared With Conventional Cigarettes.

Published in:

Toxicological Sciences, 2016, v. 149, n. 2, p. 411, doi. 10.1093/toxsci/kfv243

By:

Phillips, Blaine;
Veljkovic, Emilija;
Boué, Stéphanie;
Schlage, Walter K.;
Vuillaume, Gregory;
Martin, Florian;
Titz, Bjoern;
Leroy, Patrice;
Buettner, Ansgar;
Elamin, Ashraf;
Oviedo, Alberto;
Cabanski, Maciej;
León, Héctor De;
Guedj, Emmanuel;
Schneider, Thomas;
Talikka, Marja;
Ivanov, Nikolai V.;
Vanscheeuwijck, Patrick;
Peitsch, Manuel C.;
Julia Hoeng

Publication type:

Article

Impact Assessment of Cigarette Smoke Exposure on Organotypic Bronchial Epithelial Tissue Cultures: A Comparison of Mono-Culture and Coculture Model Containing Fibroblasts.

Published in:

Toxicological Sciences, 2015, v. 147, n. 1, p. 207, doi. 10.1093/toxsci/kfv122

By:

Iskandar, Anita R.;
Yang Xiang;
Frentzel, Stefan;
Talikka, Marja;
Leroy, Patrice;
Kuehn, Diana;
Guedj, Emmanuel;
Martin, Florian;
Mathis, Carole;
Ivanov, Nikolai V.;
Peitsch, Manuel C.;
Julia Hoeng

Publication type:

Article

Systems Toxicology Approach for Assessing Developmental Neurotoxicity in Larval Zebrafish.

Published in:

Frontiers in Genetics, 2021, v. 11, p. 1, doi. 10.3389/fgene.2021.652632

By:

Li, Roman A.;
Talikka, Marja;
Gubian, Sylvain;
vom Berg, Colette;
Martin, Florian;
Peitsch, Manuel C.;
Hoeng, Julia;
Zupanic, Anze

Publication type:

Article

Biological changes in C57BL/6 mice following 3 weeks of inhalation exposure to cigarette smoke or e-vapor aerosols.

Published in:

Inhalation Toxicology, 2018, v. 30, n. 13/14, p. 553, doi. 10.1080/08958378.2019.1576807

By:

Lee, K. Monica;
Hoeng, Julia;
Harbo, Sam;
Kogel, Ulrike;
Gardner, William;
Oldham, Michael;
Benson, Eric;
Talikka, Marja;
Kondylis, Athanasios;
Martin, Florian;
Titz, Bjoern;
Ansari, Sam;
Trivedi, Keyur;
Guedj, Emmanuel;
Elamin, Ashraf;
Ivanov, Nikolai V.;
Vanscheeuwijck, Patrick;
Peitsch, Manuel C.;
McKinney, Willie J.

Publication type:

Article

Vascular endothelial growth factor C is required for sprouting of the first lymphatic vessels from embryonic veins.

Published in:

Nature Immunology, 2004, v. 5, n. 1, p. 74, doi. 10.1038/ni1013

By:

Karkkainen, Marika J.;
Haiko, Paula;
Sainio, Kirsi;
Partanen, Juha;
Taipale, Jussi;
Petrova, Tatiana V.;
Jeltsch, Michael;
Jackson, David G.;
Talikka, Marja;
Rauvala, Heikki;
Betsholtz, Christer;
Alitalo, Kari

Publication type:

Article

Systems approaches evaluating the perturbation of xenobiotic metabolism in response to cigarette smoke exposure in nasal and bronchial tissues.

Published in:

2013

By:

Iskandar, Anita R;
Martin, Florian;
Talikka, Marja;
Schlage, Walter K;
Kostadinova, Radina;
Mathis, Carole;
Hoeng, Julia;
Peitsch, Manuel C

Publication type:

Journal Article

Systems Approaches Evaluating the Perturbation of Xenobiotic Metabolism in Response to Cigarette Smoke Exposure in Nasal and Bronchial Tissues.

Published in:

BioMed Research International, 2013, v. 2013, p. 1, doi. 10.1155/2013/512086

By:

Iskandar, Anita R.;
Martin, Florian;
Talikka, Marja;
Schlage, Walter K.;
Kostadinova, Radina;
Mathis, Carole;
Hoeng, Julia;
Peitsch, Manuel C.

Publication type:

Article

On Crowd-verification of Biological Networks.

Published in:

Bioinformatics & Biology Insights, 2013, n. 7, p. 307, doi. 10.4137/BBI.S12932

By:

Ansari, Sam;
Binder, Jean;
Boue, Stephanie;
Di Fabio, Anselmo;
Hayes, William;
Hoeng, Julia;
Iskandar, Anita;
Kleiman, Robin;
Norel, Raquel;
O¿Neel, Bruce;
Peitsch, Manuel C.;
Poussin, Carine;
Pratt, Dexter;
Rhrissorrakrai, Kahn;
Schlage, Walter K.;
Stolovitzky, Gustavo;
Talikka, Marja

Publication type:

Article

A Modular Cell-Type Focused Inflammatory Process Network Model for Non-Diseased Pulmonary Tissue.

Published in:

Bioinformatics & Biology Insights, 2013, n. 7, p. 167, doi. 10.4137/BBI.S11509

By:

Westra, Jurjen W.;
Schlage, Walter K.;
Hengstermann, Arnd;
Gebel, Stephan;
Mathis, Carole;
Thomson, Ty;
Ben Wong;
Hoang, Vy;
Veljkovic, Emilija;
Peck, Michael;
Lichtner, Rosemarie B.;
Weisensee, Dirk;
Talikka, Marja;
Deehan, Renee;
Hoeng, Julia;
Peitsch, Manuel C.

Publication type:

Article

Construction of a Computable Network Model for DNA Damage, Autophagy, Cell Death, and Senescence.

Published in:

Bioinformatics & Biology Insights, 2013, n. 7, p. 97, doi. 10.4137/BBI.S11154

By:

Gebel, Stephan;
Lichtner, Rosemarie B.;
Frushour, Brian;
Schlage, Walter K.;
Hoang, Vy;
Talikka, Marja;
Hengstermann, Arnd;
Mathis, Carole;
Veljkovic, Emilija;
Peck, Michael;
Peitsch, Manuel C.;
Deehan, Renee;
Hoeng, Julia;
Westra, Jurjen W.

Publication type:

Article