Works by Takafumi Yamashino

Results: 92

CCA1 and LHY contribute to nonhost resistance to Pyricularia oryzae (syn. Magnaporthe oryzae) in Arabidopsis thaliana.

Published in:

Bioscience, Biotechnology & Biochemistry, 2020, v. 84, n. 1, p. 76, doi. 10.1080/09168451.2019.1660612

By:

Yamaura, Saaya;
Yamauchi, Yuri;
Makihara, Motoi;
Yamashino, Takafumi;
Ishikawa, Atsushi

Publication type:

Article

Insight into the mechanism of end-of-day far-red light (EODFR)-induced shade avoidance responses in <italic>Arabidopsis thaliana</italic>.

Published in:

Bioscience, Biotechnology & Biochemistry, 2015, v. 79, n. 12, p. 1987, doi. 10.1080/09168451.2015.1065171

By:

Mizuno, Takeshi;
Oka, Haruka;
Yoshimura, Fumi;
Ishida, Kai;
Yamashino, Takafumi

Publication type:

Article

Transcription of ST2A Encoding A Sulfotransferase Family Protein That Is Involved in Jasmonic Acid Metabolism Is Controlled According to the Circadian Clock- and PIF4/PIF5-Mediated External Coincidence Mechanism in Arabidopsis thaliana.

Published in:

Bioscience, Biotechnology & Biochemistry, 2013, v. 77, n. 12, p. 2454, doi. 10.1271/bbb.130559

By:

Takafumi YAMASHINO;
Miki KITAYAMA;
Takeshi MIZUNO

Publication type:

Article

Clock-Controlled and FLOWERING LOCUS T (FT)-Dependent Photoperiodic Pathway in Lotus japonicus II: Characterization of a MicroRNA Implicated in the Control of Flowering Time.

Published in:

Bioscience, Biotechnology & Biochemistry, 2013, v. 77, n. 6, p. 1179, doi. 10.1271/bbb.120872

By:

YAMASHINO, Takafumi;
YAMAWAKI, Saori;
HAGUI, Emi;
ISHIDA, Kai;
UEOKA-NAKANISHI, Hanayo;
NAKAMICHI, Norihito;
MIZUNO, Takeshi

Publication type:

Article

Clock-Controlled and FLOWERING LOCUS T (FT)-Dependent Photoperiodic Pathway in Lotus japonicus I: Verification of the Flowering-Associated Function of an FT Homolog.

Published in:

Bioscience, Biotechnology & Biochemistry, 2013, v. 77, n. 4, p. 747, doi. 10.1271/bbb.120871

By:

YAMASHINO, Takafumi;
YAMAWAKI, Saori;
HAGUI, Emi;
UEOKA-NAKANISHI, Hanayo;
NAKAMICHI, Norihito;
ITO, Shogo;
MIZUNO, Takeshi

Publication type:

Article

From a Repressilator-Based Circadian Clock Mechanism to an External Coincidence Model Responsible for Photoperiod and Temperature Control of Plant Architecture in Arabodopsis thaliana.

Published in:

Bioscience, Biotechnology & Biochemistry, 2013, v. 77, n. 1, p. 10, doi. 10.1271/bbb.120765

By:

YAMASHINO, Takafumi

Publication type:

Article

Molecular Mechanisms of Circadian Rhythm in Lotus japonicus and Arabidopsis thaliana Are Sufficiently Compatible to Regulate Heterologous Core Clock Genes Robustly.

Published in:

Bioscience, Biotechnology & Biochemistry, 2012, v. 76, n. 12, p. 2332, doi. 10.1271/bbb.120538

By:

UEOKA-NAKANISHI, Hanayo;
YAMASHINO, Takafumi;
ISHIDA, Kai;
KAMIOKA, Mari;
NAKAMICHI, Norihito;
MIZUNO, Takeshi

Publication type:

Article

Characterization of Shade Avoidance Responses in Lotus japonicus.

Published in:

Bioscience, Biotechnology & Biochemistry, 2011, v. 75, n. 11, p. 2148, doi. 10.1271/bbb.110442

By:

Hanayo Ueoka-Nakanishi;
Nanako Hori;
Kai Ishida;
Natsuko Ono;
Takafumi Yamashino;
Norihito Nakamichi;
Takeshi Mizuno

Publication type:

Article

Light-Responsive Double B-Box Containing Transcription Factors Are Conserved in Physcomitrella patens.

Published in:

Bioscience, Biotechnology & Biochemistry, 2011, v. 75, n. 10, p. 2037, doi. 10.1271/bbb.110359

By:

Yamawaki, Saori;
Yamashino, Takafumi;
Nakamichi, Norihito;
Nakanishi, Hanayo;
Mizuno, Takeshi

Publication type:

Article

Functional Characterization of HY5 Homolog Genes Involved in Early Light-Signaling in Physcomitrella patens.

Published in:

Bioscience, Biotechnology & Biochemistry, 2011, v. 75, n. 8, p. 1533, doi. 10.1271/bbb.110219

By:

YAMAWAKI, Saori;
YAMASHINO, Takafumi;
NAKANISHI, Hanayo;
Mizuno, Takeshi

Publication type:

Article

Heterologous Expression and Functional Characterization of a Physcomitrella Pseudo Response Regulator Homolog, PpPRR2, in Arabidopsis.

Published in:

Bioscience, Biotechnology & Biochemistry, 2011, v. 75, n. 4, p. 786, doi. 10.1271/bbb.100859

By:

Satbhai, Santosh B.;
Yamashino, Takafumi;
Mizuno, Takeshi;
Aoki, Setsuyuki

Publication type:

Article

Classification of the Genes Involved in the Two-Component System of the Moss Physcomitrella patens.

Published in:

Bioscience, Biotechnology & Biochemistry, 2010, v. 74, n. 12, p. 2542, doi. 10.1271/bbb.100623

By:

Ishida, Kai;
Yamashino, Takafumi;
Nakanishi, Hanayo;
Mizuno, Takeshi

Publication type:

Article

PHYTOCHROME-INTERACTING FACTORS PIF4 and PIF5 Are Implicated in the Regulation of Hypocotyl Elongation in Response to Blue Light in Arabidopsis thaliana.

Published in:

Bioscience, Biotechnology & Biochemistry, 2010, v. 74, n. 12, p. 2538, doi. 10.1271/bbb.100586

By:

Kunihiro, Atsushi;
Yamashino, Takafumi;
Mizuno, Takeshi

Publication type:

Article

Involvement of surface polysaccharides in the organic acid resistance of Shiga Toxin-producing Escherichia coli O157:H7.

Published in:

Molecular Microbiology, 2002, v. 43, n. 3, p. 629, doi. 10.1046/j.1365-2958.2002.02768.x

By:

Barua, Soumitra;
Yamashino, Takafumi;
Hasegawa, Tadao;
Yokoyama, Keiko;
Torii, Keizo;
Ohta, Michio

Publication type:

Article

An analogue of the DnaJ molecular chaperone whose expression is controlled by σ<sup>s</sup> during the stationary phase and phosphate starvation in <em>Escherichia coli</em>.

Published in:

Molecular Microbiology, 1994, v. 13, n. 3, p. 475, doi. 10.1111/j.1365-2958.1994.tb00442.x

By:

Yamashino, Takafumi;
Kakeda, Minoru;
Ueguchi, Chiharu;
Mizuno, Takeshi

Publication type:

Article

Resolution of Escherichia coli O157:H7 That Contaminated Radish Sprouts in Two Outbreaks by Two-Dimensional Gel Electrophoresis.

Published in:

Current Microbiology, 2001, v. 43, n. 5, p. 311, doi. 10.1007/s002840010308

By:

Yokoyama, Keiko;
Iinuma, Yoshitugu;
Kawano, Yasushi;
Nakano, Miyo;
Kawagishi, Mika;
Yamashino, Takafumi;
Hasegawa, Tadao;
Ohta, Michio

Publication type:

Article

A Small-Molecule Modulator Affecting the Clock-Associated PSEUDO-RESPONSE REGULATOR 7 Amount.

Published in:

Plant & Cell Physiology, 2023, v. 64, n. 11, p. 1397, doi. 10.1093/pcp/pcad107

By:

Uehara, Takahiro N;
Takao, Saori;
Matsuo, Hiromi;
Saito, Ami N;
Ota, Eisuke;
Ono, Azusa;
Itami, Kenichiro;
Kinoshita, Toshinori;
Yamashino, Takafumi;
Yamaguchi, Junichiro;
Nakamichi, Norihito

Publication type:

Article

Insight into a Physiological Role for the EC Night-Time Repressor in the Arabidopsis Circadian Clock.

Published in:

Plant & Cell Physiology, 2015, v. 56, n. 9, p. 1738, doi. 10.1093/pcp/pcv094

By:

Takeshi Mizuno;
Miki Kitayama;
Chieko Takayama;
Takafumi Yamashino

Publication type:

Article

The EC Night-Time Repressor Plays a Crucial Role in Modulating Circadian Clock Transcriptional Circuitry by Conservatively Double-Checking Both Warm-Night and Night-Time-Light Signals in a Synergistic Manner in Arabidopsis thaliana.

Published in:

Plant & Cell Physiology, 2014, v. 55, n. 12, p. 2139, doi. 10.1093/pcp/pcu144

By:

Mizuno, Takeshi;
Kitayama, Miki;
Oka, Haruka;
Tsubouchi, Mayuka;
Takayama, Chieko;
Nomoto, Yuji;
Yamashino, Takafumi

Publication type:

Article

Ambient Temperature Signal Feeds into the Circadian Clock Transcriptional Circuitry Through the EC Night-Time Repressor in Arabidopsis thaliana.

Published in:

Plant & Cell Physiology, 2014, v. 55, n. 5, p. 958, doi. 10.1093/pcp/pcu030

By:

Mizuno, Takeshi;
Nomoto, Yuji;
Oka, Haruka;
Kitayama, Miki;
Takeuchi, Aya;
Tsubouchi, Mayuka;
Yamashino, Takafumi

Publication type:

Article

A Circadian Clock- and PIF4-Mediated Double Coincidence Mechanism is Implicated in the Thermosensitive Photoperiodic Control of Plant Architectures in Arabidopsis thaliana.

Published in:

2013

By:

Nomoto, Yuji;
Kubozono, Saori;
Miyachi, Miki;
Yamashino, Takafumi;
Nakamichi, Norihito;
Mizuno, Takeshi

Publication type:

Correction Notice

Circadian Clock- and PIF4-Controlled Plant Growth: A Coincidence Mechanism Directly Integrates a Hormone Signaling Network into the Photoperiodic Control of Plant Architectures in Arabidopsis thaliana.

Published in:

2013

By:

Nomoto, Yuji;
Kubozono, Saori;
Yamashino, Takafumi;
Nakamichi, Norihito;
Mizuno, Takeshi

Publication type:

Correction Notice

Circadian Clock- and PIF4-Controlled Plant Growth: A Coincidence Mechanism Directly Integrates a Hormone Signaling Network into the Photoperiodic Control of Plant Architectures in Arabidopsis thaliana.

Published in:

Plant & Cell Physiology, 2012, v. 53, n. 11, p. 1950, doi. 10.1093/pcp/pcs137

By:

Nomoto, Yuichi;
Kubozono, Saori;
Yamashino, Takafumi;
Nakamichi, Norihito;
Mizuno, Takeshi

Publication type:

Article

A Circadian Clock- and PIF4-Mediated Double Coincidence Mechanism is Implicated in the Thermosensitive Photoperiodic Control of Plant Architectures in Arabidopsis thaliana.

Published in:

Plant & Cell Physiology, 2012, v. 53, n. 11, p. 1965, doi. 10.1093/pcp/pcs141

By:

Nomoto, Yuichi;
Kubozono, Saori;
Miyachi, Miki;
Yamashino, Takafumi;
Nakamichi, Norihito;
Mizuno, Takeshi

Publication type:

Article

PHYTOCHROME-INTERACTING FACTOR 4 and 5 (PIF4 and PIF5) Activate the Homeobox ATHB2 and Auxin-Inducible IAA29 Genes in the Coincidence Mechanism Underlying Photoperiodic Control of Plant Growth of Arabidopsis thaliana.

Published in:

Plant & Cell Physiology, 2011, v. 52, n. 8, p. 1315, doi. 10.1093/pcp/pcr076

By:

Kunihiro, Atsushi;
Yamashino, Takafumi;
Nakamichi, Norihito;
Niwa, Yusuke;
Nakanishi, Hanayo;
Mizuno, Takeshi

Publication type:

Article

Genomewide Characterization of the Light-Responsive and Clock-Controlled Output Pathways in Lotus japonicus with Special Emphasis of its Uniqueness.

Published in:

Plant & Cell Physiology, 2010, v. 51, n. 10, p. 1800, doi. 10.1093/pcp/pcq140

By:

Ono, Natsuko;
Ishida, Kai;
Yamashino, Takafumi;
Nakanishi, Hanayo;
Sato, Shusei;
Mizuno, Takeshi;
Tabata, Satoshi

Publication type:

Article

The Circadian Clock Regulates the Photoperiodic Response of Hypocotyl Elongation through a Coincidence Mechanism in Arabidopsis thaliana.

Published in:

Plant & Cell Physiology, 2009, v. 50, n. 4, p. 838, doi. 10.1093/pcp/pcp028

By:

Yusuke Niwa;
Takafumi Yamashino;
Takeshi Mizuno

Publication type:

Article

Transcript Profiling of an Arabidopsis PSEUDO RESPONSE REGULATOR Arrhythmic Triple Mutant Reveals a Role for the Circadian Clock in Cold Stress Response.

Published in:

Plant & Cell Physiology, 2009, v. 50, n. 3, p. 447, doi. 10.1093/pcp/pcp004

By:

Norihito Nakamichi;
Miyako Kusano;
Atsushi Fukushima;
Masanori Kita;
Shogo Ito;
Takafumi Yamashino;
Kazuki Saito;
Hitoshi Sakakibara;
Takeshi Mizuno

Publication type:

Article

A Genetic Study of the Arabidopsis Circadian Clock with Reference to the TIMING OF CAB EXPRESSION 1 (TOC1) Gene.

Published in:

Plant & Cell Physiology, 2009, v. 50, n. 2, p. 290, doi. 10.1093/pcp/pcn198

By:

Shogo Ito;
Hideaki Kawamura;
Yusuke Niwa;
Norihito Nakamichi;
Takafumi Yamashino;
Takeshi Mizuno

Publication type:

Article

Involvement of Arabidopsis Clock-Associated Pseudo-Response Regulators in Diurnal Oscillations of Gene Expression in the Presence of Environmental Time Cues.

Published in:

Plant & Cell Physiology, 2008, v. 49, n. 12, p. 1839, doi. 10.1093/pcp/pcn165

By:

Takafumi Yamashino;
Shogo Ito;
Yusuke Niwa;
Atsushi Kunihiro;
Norihito Nakamichi;
Takeshi Mizuno

Publication type:

Article

Comparative Transcriptome of Diurnally Oscillating Genes and Hormone-Responsive Genes in Arabidopsis thaliana: Insight into Circadian Clock-Controlled Daily Responses to Common Ambient Stresses in Plants.

Published in:

Plant & Cell Physiology, 2008, v. 49, n. 3, p. 481, doi. 10.1093/pcp/pcn008

By:

Takeshi Mizuno;
Takafumi Yamashino

Publication type:

Article

Insight into Missing Genetic Links Between Two Evening-Expressed Pseudo-Response Regulator Genes TOC1 and PRR5 in the Circadian Clock-Controlled Circuitry in Arabidopsis thaliana.

Published in:

Plant & Cell Physiology, 2008, v. 49, n. 2, p. 201, doi. 10.1093/pcp/pcm178

By:

Shogo Ito;
Yusuke Niwa;
Norihito Nakamichi;
Hideaki Kawamura;
Takafumi Yamashino;
Takeshi Mizuno

Publication type:

Article

Three Type-B Response Regulators, ARR1, ARR10 and ARR12, Play Essential but Redundant Roles in Cytokinin Signal Transduction Throughout the Life Cycle of Arabidopsis thaliana.

Published in:

Plant & Cell Physiology, 2008, v. 49, n. 1, p. 47, doi. 10.1093/pcp/pcm165

By:

Kai Ishida;
Takafumi Yamashino;
Akihiro Yokoyama;
Takeshi Mizuno

Publication type:

Article

Rhythmic and Light-Inducible Appearance of Clock-Associated Pseudo-Response Regulator Protein PRR9 through Programmed Degradation in the Dark in Arabidopsis thaliana.

Published in:

Plant & Cell Physiology, 2008, v. 49, n. 1, p. 133, doi. 10.1093/pcp/pcm169

By:

Shogo Ito;
Norihito Nakamichi;
Takatoshi Kiba;
Takafumi Yamashino;
Takeshi Mizuno

Publication type:

Article

Rhythmic and Light-Inducible Appearance of Clock-Associated Pseudo-Response Regulator Protein PRR9 Through Programmed Degradation in the Dark in Arabidopsis thaliana.

Published in:

Plant & Cell Physiology, 2007, v. 48, n. 11, p. 1644, doi. 10.1093/pcp/pcm122

By:

Shogo Ito;
Norihito Nakamichi;
Takatoshi Kiba;
Takafumi Yamashino;
Takeshi Mizuno

Publication type:

Article

Identification of Amino Acid Substitutions that Render the Arabidopsis Cytokinin Receptor Histidine Kinase AHK4 Constitutively Active.

Published in:

Plant & Cell Physiology, 2007, v. 48, n. 12, p. 1809, doi. 10.1093/pcp/pcm145

By:

Kumiko Miwa;
Kuniko Ishikawa;
Kazunori Terada;
Hisami Yamada;
Tomomi Suzuki;
Takafumi Yamashino;
Takeshi Mizuno

Publication type:

Article

Genetic Linkages Between Circadian Clock-Associated Components and Phytochrome-Dependent Red Light Signal Transduction in Arabidopsis thaliana.

Published in:

Plant & Cell Physiology, 2007, v. 48, n. 7, p. 971, doi. 10.1093/pcp/pcm063

By:

Shogo Ito;
Norihito Nakamichi;
Yuko Nakamura;
Yusuke Niwa;
Takahiko Kato;
Masaya Murakami;
Masanori Kita;
Tsuyoshi Mizoguchi;
Kanae Niinuma;
Takafumi Yamashino;
Takeshi Mizuno

Publication type:

Article

Genetic Linkages of the Circadian Clock-Associated Genes, TOC1, CCA1 and LHY, in the Photoperiodic Control of Flowering Time in Arabidopsis thaliana.

Published in:

Plant & Cell Physiology, 2007, v. 48, n. 7, p. 925, doi. 10.1093/pcp/pcm067

By:

Yusuke Niwa;
Shogo Ito;
Norihito Nakamichi;
Tsuyoshi Mizoguchi;
Kanae Niinuma;
Takafumi Yamashino;
Takeshi Mizuno

Publication type:

Article

Arabidopsis Clock-Associated Pseudo-Response Regulators PRR9, PRR7 and PRR5 Coordinately and Positively Regulate Flowering Time Through the Canonical CONSTANS-Dependent Photoperiodic Pathway.

Published in:

Plant & Cell Physiology, 2007, v. 48, n. 6, p. 822, doi. 10.1093/pcp/pcm056

By:

Norihito Nakamichi;
Masanori Kita;
Kanae Niinuma;
Shogo Ito;
Takafumi Yamashino;
Tsuyoshi Mizoguchi;
Takeshi Mizuno

Publication type:

Article

AHK5 Histidine Kinase Regulates Root Elongation Through an ETR1-Dependent Abscisic Acid and Ethylene Signaling Pathway in Arabidopsis thaliana.

Published in:

Plant & Cell Physiology, 2007, v. 48, n. 2, p. 375

By:

Ayako Iwama;
Takafumi Yamashino;
Yasushi Tanaka;
Hitoshi Sakakibara;
Tatsuo Kakimoto;
Shusei Sato;
Tomohiko Kato;
Satoshi Tabata;
Akira Nagatani;
Takeshi Mizuno

Publication type:

Article

Type-B ARR Transcription Factors, ARR10 and ARR12, are Implicated in Cytokinin-Mediated Regulation of Protoxylem Differentiation in Roots of Arabidopsis thaliana.

Published in:

Plant & Cell Physiology, 2007, v. 48, n. 1, p. 84

By:

Akihiro Yokoyama;
Takafumi Yamashino;
Yu-Ichiro Amano;
Yoshinori Tajima;
Aya Imamura;
Hitoshi Sakakibara;
Takeshi Mizuno

Publication type:

Article

Pseudo-Response Regulator (PRR) Homologues of the Moss Physcomitrella patens: Insights into the Evolution of the PRR Family in Land Plants.

Published in:

DNA Research, 2011, v. 18, n. 1, p. 39, doi. 10.1093/dnares/dsq033

By:

Satbhai, Santosh B.;
Yamashino, Takafumi;
Okada, Ryo;
Nomoto, Yuji;
Mizuno, Takeshi;
Tezuka, Yuki;
Itoh, Tomonori;
Tomita, Mitsuru;
Otsuki, Susumu;
Aoki, Setsuyuki

Publication type:

Article

A Genome-Wide Compilation of the Two-Component Systems in Lotus japonicus.

Published in:

DNA Research, 2009, v. 16, n. 4, p. 237, doi. 10.1093/dnares/dsp012

By:

Ishida, Kai;
Niwa, Yusuke;
Yamashino, Takafumi;
Mizuno, Takeshi

Publication type:

Article

Molecular Basis for Promoter Selectivity of the Transcriptional Activator OmpR of Escherichia coli: Isolation of Mutants That Can Activate the Non-Cognate kdpABC Promoter.

Published in:

Journal of Biochemistry, 2005, v. 137, n. 1, p. 51, doi. 10.1093/jb/mvi006

By:

Ohashi, Kenji;
Yamashino, Takafumi;
Mizuno, Takeshi

Publication type:

Article

The mRNA decapping machinery targets LBD3/ASL9 to mediate apical hook and lateral root development.

Published in:

Life Science Alliance, 2023, v. 6, n. 9, p. 1, doi. 10.26508/lsa.202302090

By:

Zhangli Zuo;
Roux, Milena E.;
Chevalier, Jonathan R.;
Dagdas, Yasin F.;
Takafumi Yamashino;
Højgaard, Søren D.;
Knight, Emilie;
Østergaard, Lars;
Rodriguez, Eleazar;
Petersen, Morten

Publication type:

Article

Genome-wide comparison of the His-to-Asp phosphorelay signaling components of three symbiotic genera of Rhizobia.

Published in:

DNA Research, 2004, v. 11, n. 1, p. 57, doi. 10.1093/dnares/11.1.57

By:

Hagiwara, Daisuke;
Yamashino, Takafumi;
Mizuno, Takeshi

Publication type:

Article

PSEUDO-RESPONSE REGULATORS, PRR9, PRR7 and PRR5, Together Play Essential Roles Close to the Circadian Clock of <it>Arabidopsis thaliana</it>.

Published in:

Plant & Cell Physiology, 2005, v. 46, n. 5, p. 686, doi. 10.1093/pcp/pci086

By:

Nakamichi, Norihito;
Kita, Masanori;
Shogo Ito;
Yamashino, Takafumi;
Mizuno, Takeshi

Publication type:

Article

The Arabidopsis Pseudo-response Regulators, PRR5 and PRR7, Coordinately Play Essential Roles for Circadian Clock Function.

Published in:

Plant & Cell Physiology, 2005, v. 46, n. 4, p. 609, doi. 10.1093/pcp/pci061

By:

Nakamichi, Norihito;
Kita, Masanori;
Ito, Shogo;
Sato, Eriko;
Yamashino, Takafumi;
Mizuno, Takeshi

Publication type:

Article

Combinatorial Microarray Analysis Revealing Arabidopsis Genes Implicated in Cytokinin Responses through the His→Asp Phosphorelay Circuitry.

Published in:

Plant & Cell Physiology, 2005, v. 46, n. 2, p. 339, doi. 10.1093/pcp/pci033

By:

Kiba, Takatoshi;
Naitou, Takahito;
Koizumi, Nobuya;
Yamashino, Takafumi;
Sakakibara, Hitoshi;
Mizuno, Takeshi

Publication type:

Article

Circadian-Controlled Basic/Helix-Loop-Helix Factor, PIL6, Implicated in Light-Signal Transduction in Arabidopsis thaliana.

Published in:

Plant & Cell Physiology, 2004, v. 45, n. 8, p. 1078, doi. 10.1093/pcp/pch124

By:

Fujimori, Toru;
Yamashino, Takafumi;
Kato, Takahiko;
Mizuno, Takeshi

Publication type:

Article