Works by Taboada, Eduardo N.

Results: 36

A framework for assessing the concordance of molecular typing methods and the true strain phylogeny of Campylobacter jejuni and C. coli using draft genome sequence data.

Published in:

Frontiers in Cellular & Infection Microbiology, 2012, v. 2, p. 1, doi. 10.3389/fcimb.2012.00057

By:

Carrillo, Catherine D.;
Kruczkiewicz, Peter;
Mutschall, Steven;
Tudor, Andrei;
Clark, Clifford;
Taboada, Eduardo N.

Publication type:

Article

Epidemiology of Campylobacter jejuni in raccoons (Procyon lotor) on swine farms and in conservation areas in southern Ontario.

Published in:

Zoonoses & Public Health, 2021, v. 68, n. 1, p. 19, doi. 10.1111/zph.12786

By:

Vogt, Nadine A.;
Pearl, David L.;
Taboada, Eduardo N.;
Mutschall, Steven K.;
Bondo, Kristin J.;
Jardine, Claire M.

Publication type:

Article

Epidemiology of Campylobacter, Salmonella and antimicrobial resistant Escherichia coli in free‐living Canada geese (Branta canadensis) from three sources in southern Ontario.

Published in:

Zoonoses & Public Health, 2018, v. 65, n. 7, p. 873, doi. 10.1111/zph.12511

By:

Vogt, Nadine A.;
Pearl, David L.;
Taboada, Eduardo N.;
Mutschall, Steven K.;
Janecko, Nicol;
Reid‐Smith, Richard;
Bloomfield, Bryan;
Jardine, Claire M.

Publication type:

Article

A repeated cross‐sectional study of the epidemiology of Campylobacter and antimicrobial resistant Enterobacteriaceae in free‐living Canada geese in Guelph, Ontario, Canada.

Published in:

Zoonoses & Public Health, 2019, v. 66, n. 1, p. 60, doi. 10.1111/zph.12529

By:

Vogt, Nadine A.;
Pearl, David L.;
Taboada, Eduardo N.;
Reid‐Smith, Richard J.;
Mulvey, Michael R.;
Janecko, Nicol;
Mutschall, Steven K.;
Jardine, Claire M.

Publication type:

Article

"These Aren't the Strains You're Looking for": Recovery Bias of Common Campylobacter jejuni Subtypes in Mixed Cultures.

Published in:

Frontiers in Microbiology, 2020, p. 1, doi. 10.3389/fmicb.2020.00541

By:

Hetman, Benjamin M.;
Mutschall, Steven K.;
Carrillo, Catherine D.;
Thomas, James E.;
Gannon, Victor P. J.;
Inglis, G. Douglas;
Taboada, Eduardo N.

Publication type:

Article

SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli.

Published in:

BMC Microbiology, 2016, v. 16, p. 1, doi. 10.1186/s12866-016-0680-0

By:

Whiteside, Matthew D.;
Laing, Chad R.;
Manji, Akiff;
Kruczkiewicz, Peter;
Taboada, Eduardo N.;
Gannon, Victor P. J.

Publication type:

Article

Extensive characterization of Campylobacter jejuni chicken isolates to uncover genes involved in the ability to compete for gut colonization.

Published in:

BMC Microbiology, 2015, v. 15, n. 1, p. 97, doi. 10.1186/s12866-015-0433-5

By:

Thibodeau, Alexandre;
Fravalo, Philippe;
Taboada, Eduardo N.;
Laurent-Lewandowski, Sylvette;
Guévremont, Evelyne;
Quessy, Sylvain;
Letellier, Ann

Publication type:

Article

Development of a comparative genomic fingerprinting assay for rapid and high resolution genotyping of Arcobacter butzleri.

Published in:

BMC Microbiology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12866-015-0426-4

By:

Webb, Andrew L.;
Kruczkiewicz, Peter;
Selinger, L. Brent;
Inglis, G. Douglas;
Taboada, Eduardo N.

Publication type:

Article

Systematic Evaluation of Whole-Genome Sequencing Based Prediction of Antimicrobial Resistance in Campylobacter jejuni and C. coli.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.776967

By:

Hodges, Lisa M.;
Taboada, Eduardo N.;
Koziol, Adam;
Mutschall, Steven;
Blais, Burton W.;
Inglis, G. Douglas;
Leclair, Daniel;
Carrillo, Catherine D.

Publication type:

Article

The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies.

Published in:

PLoS ONE, 2016, v. 11, n. 1, p. 1, doi. 10.1371/journal.pone.0147101

By:

Yoshida, Catherine E.;
Kruczkiewicz, Peter;
Laing, Chad R.;
Lingohr, Erika J.;
Gannon, Victor P. J.;
Nash, John H. E.;
Taboada, Eduardo N.

Publication type:

Article

The Validation and Implications of Using Whole Genome Sequencing as a Replacement for Traditional Serotyping for a National Salmonella Reference Laboratory.

Published in:

Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01044

By:

Yachison, Chris A.;
Yoshida, Catherine;
Robertson, James;
Nash, John H. E.;
Kruczkiewicz, Peter;
Taboada, Eduardo N.;
Walker, Matthew;
Reimer, Aleisha;
Christianson, Sara;
Nichani, Anil;
Nadon, Celine

Publication type:

Article

Food Safety in the Age of Next Generation Sequencing, Bioinformatics, and Open Data Access.

Published in:

Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.00909

By:

Taboada, Eduardo N.;
Graham, Morag R.;
Carriço, João A.;
Van Domselaar, Gary

Publication type:

Article

Source attribution of human campylobacteriosis at the point of exposure by combining comparative exposure assessment and subtype comparison based on comparative genomic fingerprinting.

Published in:

PLoS ONE, 2017, v. 12, n. 8, p. 1, doi. 10.1371/journal.pone.0183790

By:

Ravel, André;
Hurst, Matt;
Petrica, Nicoleta;
David, Julie;
Mutschall, Steven K.;
Pintar, Katarina;
Taboada, Eduardo N.;
Pollari, Frank

Publication type:

Article

Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of Campylobacter jejuni.

Published in:

BMC Evolutionary Biology, 2008, v. 8, p. 1, doi. 10.1186/1471-2148-8-229

By:

Taboada, Eduardo N.;
MacKinnon, Joanne M.;
Luebbert, Christian C.;
Gannon, Victor P. J.;
Nash, John H. E.;
Rahn, Kris

Publication type:

Article

Spatial and Temporal Drivers of Zoonotic Pathogen Contamination of an Agricultural Watershed.

Published in:

Journal of Environmental Quality, 2012, v. 41, n. 1, p. 242, doi. 10.2134/jeq2011.0203

By:

Jokinen, Cassandra C.;
Edge, Thomas A.;
Koning, Wendell;
Laing, Chad R.;
Lapen, David R.;
Miller, Jim;
Mutschall, Steven;
Scott, Andrew;
Taboada, Eduardo N.;
Thomas, James E.;
Topp, Edward;
Wilkes, Graham;
Gannon, Victor P. J.

Publication type:

Article

Genome-wide identification of geographical segregated genetic markers in Salmonella enterica serovar Typhimurium variant 4,[5],12:i:-.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-33266-5

By:

Palma, Federica;
Manfreda, Gerardo;
Silva, Mickael;
Parisi, Antonio;
Barker, Dillon O. R.;
Taboada, Eduardo N.;
Pasquali, Frédérique;
Rossi, Mirko

Publication type:

Article

A strain comparison of Campylobacter isolated from retail poultry and human clinical cases in Atlantic Canada.

Published in:

PLoS ONE, 2019, v. 14, n. 5, p. 1, doi. 10.1371/journal.pone.0215928

By:

Hodges, Lisa M.;
Carrillo, Catherine D.;
Upham, Jacqueline P.;
Borza, Antonela;
Eisebraun, Mikaela;
Kenwell, Robyn;
Mutschall, Steven K.;
Haldane, David;
Schleihauf, Emily;
Taboada, Eduardo N.

Publication type:

Article

Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 461, doi. 10.1186/1471-2105-11-461

By:

Laing, Chad;
Buchanan, Cody;
Taboada, Eduardo N.;
Yongxiang Zhang;
Kropinski, Andrew;
Villegas, Andre;
Thomas, James E.;
Gannon, Victor P. J.

Publication type:

Article

Local genes for local bacteria: Evidence of allopatry in the genomes of transatlantic Campylobacter populations.

Published in:

Molecular Ecology, 2017, v. 26, n. 17, p. 4497, doi. 10.1111/mec.14176

By:

Pascoe, Ben;
Méric, Guillaume;
Yahara, Koji;
Wimalarathna, Helen;
Murray, Susan;
Hitchings, Matthew D.;
Sproston, Emma L.;
Carrillo, Catherine D.;
Taboada, Eduardo N.;
Cooper, Kerry K.;
Huynh, Steven;
Cody, Alison J.;
Jolley, Keith A.;
Maiden, Martin C. J.;
McCarthy, Noel D.;
Didelot, Xavier;
Parker, Craig T.;
Sheppard, Samuel K.

Publication type:

Article

Commensal Escherichia coli Strains of Bovine Origin Competitively Mitigated Escherichia coli O157:H7 in a Gnotobiotic Murine Intestinal Colonization Model with or without Physiological Stress.

Published in:

Animals (2076-2615), 2023, v. 13, n. 16, p. 2577, doi. 10.3390/ani13162577

By:

Lange, Maximo E.;
Clarke, Sandra T.;
Boras, Valerie F.;
Brown, Catherine L. J.;
Zhang, Guangzhi;
Laing, Chad R.;
Uwiera, Richard R. E.;
Montina, Tony;
Kalmokoff, Martin L.;
Taboada, Eduardo N.;
Gannon, Victor P. J.;
Metz, Gerlinde A. S.;
Church, John S.;
Inglis, G. Douglas

Publication type:

Article

Generalizability and comparability of prevalence estimates in the wild bird literature: methodological and epidemiological considerations.

Published in:

Animal Health Research Reviews, 2020, v. 21, n. 1, p. 89, doi. 10.1017/S1466252320000043

By:

Vogt, Nadine A.;
Stevens, Christian P.G.;
Pearl, David L.;
Taboada, Eduardo N.;
Jardine, Claire M.

Publication type:

Article

Integrating Whole-Genome Sequencing Data Into Quantitative Risk Assessment of Foodborne Antimicrobial Resistance: A Review of Opportunities and Challenges.

Published in:

Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.01107

By:

Collineau, Lucie;
Boerlin, Patrick;
Carson, Carolee A.;
Chapman, Brennan;
Fazil, Aamir;
Hetman, Benjamin;
McEwen, Scott A.;
Parmley, E. Jane;
Reid-Smith, Richard J.;
Taboada, Eduardo N.;
Smith, Ben A.

Publication type:

Article

Comparative Variation within the Genome of Campylobacter jejuni NCTC 11168 in Human and Murine Hosts.

Published in:

PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0088229

By:

Thomas, Dallas K.;
Lone, Abdul G.;
Selinger, L. Brent;
Taboada, Eduardo N.;
Uwiera, Richard R. E.;
Abbott, D. Wade;
Inglis, G. Douglas

Publication type:

Article

Detection of Genetic Diversity in Campylobacter jejuni Isolated from a Commercial Turkey Flock Using flaA Typing, MLST Analysis and Microarray Assay.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0051582

By:

El-Adawy, Hosny;
Hotzel, Helmut;
Tomaso, Herbert;
Neubauer, Heinrich;
Taboada, Eduardo N.;
Ehricht, Ralf;
Hafez, Hafez M.

Publication type:

Article

An epidemiological framework for improving the accuracy of whole-genome sequence-based antimicrobial resistance surveillance in Salmonella.

Published in:

Canadian Journal of Microbiology, 2025, v. 71, p. 1, doi. 10.1139/cjm-2024-0090

By:

Hetman, Benjamin M.;
Pearl, David L.;
Reid-Smith, Richard;
Parmley, E. Jane;
Taboada, Eduardo N.

Publication type:

Article

Rates of fluoroquinolone resistance in domestically acquired Campylobacter jejuni are increasing in people living within a model study location in Canada.

Published in:

Canadian Journal of Microbiology, 2021, v. 67, n. 1, p. 37, doi. 10.1139/cjm-2020-0146

By:

Inglis, G. Douglas;
Taboada, Eduardo N.;
Boras, Valerie F.

Publication type:

Article

Therapeutic administration of enrofloxacin in mice does not select for fluoroquinolone resistance in Campylobacter jejuni.

Published in:

Canadian Journal of Microbiology, 2018, v. 64, n. 10, p. 681, doi. 10.1139/cjm-2017-0741

By:

Inglis, G. Douglas;
Zaytsoff, Sarah J.M.;
Selinger, L. Brent;
Taboada, Eduardo N.;
Uwiera, Richard R.E.

Publication type:

Article

Prevalence and diversity of waterborne Arcobacter butzleri in southwestern Alberta, Canada.

Published in:

Canadian Journal of Microbiology, 2017, v. 63, n. 4, p. 330, doi. 10.1139/cjm-2016-0745

By:

Webb, Andrew L.;
Taboada, Eduardo N.;
Selinger, L. Brent;
Boras, Valerie F.;
Inglis, G. Douglas

Publication type:

Article

Frequent Implication of Multistress-Tolerant Campylobacter jejuni in Human Infections.

Published in:

2018

By:

Euna Oh;
Chui, Linda;
Junghee Bae;
Li, Vincent;
Ma, Angela;
Mutschall, Steven K.;
Taboada, Eduardo N.;
McMullen, Lynn M.;
Byeonghwa Jeon;
Oh, Euna;
Bae, Junghee;
Jeon, Byeonghwa

Publication type:

journal article

Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3340-8

By:

Clark, Clifford G.;
Berry, Chrystal;
Walker, Matthew;
Petkau, Aaron;
Barker, Dillon O. R.;
Cai Guan;
Reimer, Aleisha;
Taboada, Eduardo N.

Publication type:

Article

Erratum: Inglis, G.D., et al. Tetracycline Resistant Campylobacter jejuni Subtypes Emanating from Beef Cattle Administered Non-Therapeutic Chlortetracycline Are Longitudinally Transmitted within the Production Continuum but Are Not Detected in Ground Beef. Microorganisms 2020, 8, 23

Published in:

2020

By:

Inglis, G. Douglas;
Gusse, Jenny F.;
House, Kathaleen E.;
Shelton, Tara G.;
Taboada, Eduardo N.

Publication type:

Correction Notice

Tetracycline Resistant Campylobacter jejuni Subtypes Emanating from Beef Cattle Administered Non-Therapeutic Chlortetracycline are Longitudinally Transmitted within the Production Continuum but are Not Detected in Ground Beef.

Published in:

Microorganisms, 2020, v. 8, n. 1, p. 23, doi. 10.3390/microorganisms8010023

By:

Inglis, G. Douglas;
Gusse, Jenny F.;
House, Kathaleen E.;
Shelton, Tara G.;
Taboada, Eduardo N.

Publication type:

Article

In silico genomic analyses reveal three distinct lineages of Escherichia coli O157:H7, one of which is associated with hyper-virulence.

Published in:

BMC Genomics, 2009, v. 10, p. 287, doi. 10.1186/1471-2164-10-287

By:

Laing, Chad R.;
Buchanan, Cody;
Taboada, Eduardo N.;
Yongxiang Zhang;
Karmali, Mohamed A.;
Thomas, James E.;
Gannon, Victor P. J.

Publication type:

Article

Comparative genomic analysis of Campylobacter jejuni associated with Guillain-Barré and Miller Fisher syndromes: neuropathogenic and enteritis-associated isolates can share high levels of genomic similarity.

Published in:

BMC Genomics, 2007, v. 8, p. 1, doi. 10.1186/1471-2164-8-359

By:

Taboada, Eduardo N;
van Belkum, Alex;
Yuki, Nobuhiro;
Acedillo, Rey R;
Godschalk, Peggy CR;
Koga, Michiaki;
Endtz, Hubert P;
Gilbert, Michel;
Nash, John HE

Publication type:

Article

Comparative genomics profiling of clinical isolates of Aeromonas salmonicida using DNA microarrays.

Published in:

BMC Genomics, 2006, v. 7, p. 1, doi. 10.1186/1471-2164-7-43

By:

Nash, John HE;
Findlay, Wendy A;
Luebbert, Christian C;
Mykytczuk, Oksana L;
Foote, Simon J;
Taboada, Eduardo N;
Carrillo, Catherine D;
Boyd, Jessica M;
Colquhoun, Duncan J;
Reith, Michael E;
Brown, Laura L

Publication type:

Article

A new approach for the analysis of bacterial microarray-based Comparative Genomic Hybridization: insights from an empirical study.

Published in:

BMC Genomics, 2005, v. 6, p. 78, doi. 10.1186/1471-2164-6-78

By:

Taboada, Eduardo N;
Acedillo, Rey R;
Luebbert, Christian C;
Findlay, Wendy A;
Nash, John HE

Publication type:

Article

Works by Taboada, Eduardo N.

A framework for assessing the concordance of molecular typing methods and the true strain phylogeny of Campylobacter jejuni and C. coli using draft genome sequence data.

Epidemiology of Campylobacter jejuni in raccoons (Procyon lotor) on swine farms and in conservation areas in southern Ontario.

Epidemiology of Campylobacter, Salmonella and antimicrobial resistant Escherichia coli in free‐living Canada geese (Branta canadensis) from three sources in southern Ontario.

A repeated cross‐sectional study of the epidemiology of Campylobacter and antimicrobial resistant Enterobacteriaceae in free‐living Canada geese in Guelph, Ontario, Canada.

"These Aren't the Strains You're Looking for": Recovery Bias of Common Campylobacter jejuni Subtypes in Mixed Cultures.

SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli.

Extensive characterization of Campylobacter jejuni chicken isolates to uncover genes involved in the ability to compete for gut colonization.

Development of a comparative genomic fingerprinting assay for rapid and high resolution genotyping of Arcobacter butzleri.

Systematic Evaluation of Whole-Genome Sequencing Based Prediction of Antimicrobial Resistance in Campylobacter jejuni and C. coli.

The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies.

The Validation and Implications of Using Whole Genome Sequencing as a Replacement for Traditional Serotyping for a National Salmonella Reference Laboratory.

Food Safety in the Age of Next Generation Sequencing, Bioinformatics, and Open Data Access.

Source attribution of human campylobacteriosis at the point of exposure by combining comparative exposure assessment and subtype comparison based on comparative genomic fingerprinting.

Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of Campylobacter jejuni.

Spatial and Temporal Drivers of Zoonotic Pathogen Contamination of an Agricultural Watershed.

Genome-wide identification of geographical segregated genetic markers in Salmonella enterica serovar Typhimurium variant 4,[5],12:i:-.

A strain comparison of Campylobacter isolated from retail poultry and human clinical cases in Atlantic Canada.

Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions.

Local genes for local bacteria: Evidence of allopatry in the genomes of transatlantic Campylobacter populations.

Commensal Escherichia coli Strains of Bovine Origin Competitively Mitigated Escherichia coli O157:H7 in a Gnotobiotic Murine Intestinal Colonization Model with or without Physiological Stress.

Generalizability and comparability of prevalence estimates in the wild bird literature: methodological and epidemiological considerations.

Integrating Whole-Genome Sequencing Data Into Quantitative Risk Assessment of Foodborne Antimicrobial Resistance: A Review of Opportunities and Challenges.

Comparative Variation within the Genome of <i>Campylobacter jejuni</i> NCTC 11168 in Human and Murine Hosts.

Detection of Genetic Diversity in <i>Campylobacter jejuni</i> Isolated from a Commercial Turkey Flock Using <i>flaA</i> Typing, MLST Analysis and Microarray Assay.

An epidemiological framework for improving the accuracy of whole-genome sequence-based antimicrobial resistance surveillance in Salmonella.

Rates of fluoroquinolone resistance in domestically acquired Campylobacter jejuni are increasing in people living within a model study location in Canada.

Therapeutic administration of enrofloxacin in mice does not select for fluoroquinolone resistance in Campylobacter jejuni.

Prevalence and diversity of waterborne Arcobacter butzleri in southwestern Alberta, Canada.

Frequent Implication of Multistress-Tolerant Campylobacter jejuni in Human Infections.

Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population.

Erratum: Inglis, G.D., et al. Tetracycline Resistant Campylobacter jejuni Subtypes Emanating from Beef Cattle Administered Non-Therapeutic Chlortetracycline Are Longitudinally Transmitted within the Production Continuum but Are Not Detected in Ground Beef. Microorganisms 2020, 8, 23

Tetracycline Resistant Campylobacter jejuni Subtypes Emanating from Beef Cattle Administered Non-Therapeutic Chlortetracycline are Longitudinally Transmitted within the Production Continuum but are Not Detected in Ground Beef.

In silico genomic analyses reveal three distinct lineages of Escherichia coli O157:H7, one of which is associated with hyper-virulence.

Comparative genomic analysis of Campylobacter jejuni associated with Guillain-Barré and Miller Fisher syndromes: neuropathogenic and enteritis-associated isolates can share high levels of genomic similarity.

Comparative genomics profiling of clinical isolates of Aeromonas salmonicida using DNA microarrays.

A new approach for the analysis of bacterial microarray-based Comparative Genomic Hybridization: insights from an empirical study.