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Allele-Specific Transcript Abundance: A Pilot Study in Healthy Centenarians.
Published in:
2020
By:
- Tindale, Lauren C;
- Thiessen, Nina;
- Leach, Stephen;
- Brooks-Wilson, Angela R
Publication type:
journal article
Burden of Common Complex Disease Variants in the Exomes of Two Healthy Centenarian Brothers.
Published in:
2015
By:
- Tindale, Lauren C.;
- Zeng, andy;
- Bretherick, Karla L.;
- Leach, Stephen;
- Thiessen, Nina;
- Brooks-Wilson, angela R.
Publication type:
journal article
Caenorhabditis elegans cisRED: a catalogue of conserved genomic elements.
Published in:
Nucleic Acids Research, 2009, v. 37, n. 4, p. 1323, doi. 10.1093/nar/gkn1041
By:
- Sleumer, Monica C.;
- Bilenky, Mikhail;
- He, An;
- Robertson, Gordon;
- Thiessen, Nina;
- Jones, Steven J. M.
Publication type:
Article
Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing.
Published in:
Nucleic Acids Research, 2008, v. 36, n. 14, p. 4549, doi. 10.1093/nar/gkn382
By:
- Wederell, Elizabeth D.;
- Bilenky, Mikhail;
- Cullum, Rebecca;
- Thiessen, Nina;
- Dagpinar, Melis;
- Delaney, Allen;
- Varhol, Richard;
- Zhao, YongJun;
- Zeng, Thomas;
- Bernier, Bridget;
- Ingham, Matthew;
- Hirst, Martin;
- Robertson, Gordon;
- Marra, Marco A.;
- Jones, Steven;
- Hoodless, Pamela A.
Publication type:
Article
Complete genomic landscape of a recurring sporadic parathyroid carcinoma.
Published in:
Journal of Pathology, 2013, v. 230, n. 3, p. 249, doi. 10.1002/path.4203
By:
- Kasaian, Katayoon;
- Wiseman, Sam M;
- Thiessen, Nina;
- Mungall, Karen L;
- Corbett, Richard D;
- Qian, Jenny Q;
- Nip, Ka Ming;
- He, Ann;
- Tse, Kane;
- Chuah, Eric;
- Varhol, Richard J;
- Pandoh, Pawan;
- McDonald, Helen;
- Zeng, Thomas;
- Tam, Angela;
- Schein, Jacquie;
- Birol, Inanc;
- Mungall, Andrew J;
- Moore, Richard A;
- Zhao, Yongjun
Publication type:
Article
De novo assembly and analysis of RNA-seq data.
Published in:
Nature Methods, 2010, v. 7, n. 11, p. 909, doi. 10.1038/nmeth.1517
By:
- Robertson, Gordon;
- Schein, Jacqueline;
- Chiu, Readman;
- Corbett, Richard;
- Field, Matthew;
- Jackman, Shaun D.;
- Mungall, Karen;
- Sam Lee;
- Okada, Hisanaga Mark;
- Qian, Jenny Q.;
- Griffith, Malachi;
- Raymond, Anthony;
- Thiessen, Nina;
- Cezard, Timothee;
- Butterfield, Yaron S.;
- Newsome, Richard;
- Chan, Simon K.;
- Rong She;
- Varhol, Richard;
- Kamoh, Baljit
Publication type:
Article
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing.
Published in:
Nature Methods, 2007, v. 4, n. 8, p. 651, doi. 10.1038/nmeth1068
By:
- Robertson, Gordon;
- Hirst, Martin;
- Bainbridge, Matthew;
- Bilenky, Misha;
- Yongjun Zhao;
- Zeng, Thomas;
- Euskirchen, Ghia;
- Bernier, Bridget;
- Varhol, Richard;
- Delaney, Allen;
- Thiessen, Nina;
- Griffith, Obi L;
- He, Ann;
- Marra, Marco;
- Snyder, Michael;
- Jones, Steven
Publication type:
Article
JAGuaR: Junction Alignments to Genome for RNA-Seq Reads.
Published in:
PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0102398
By:
- Butterfield, Yaron S.;
- Kreitzman, Maayan;
- Thiessen, Nina;
- Corbett, Richard D.;
- Li, Yisu;
- Pang, Johnson;
- Ma, Yussanne P.;
- Jones, Steven J. M.;
- Birol, İnanç
Publication type:
Article
RhoGAP domain-containing fusions and PPAPDC1A fusions are recurrent and prognostic in diffuse gastric cancer.
Published in:
Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-06747-4
By:
- Yang, Hanna;
- Hong, Dongwan;
- Cho, Soo Young;
- Park, Young Soo;
- Ko, Woo Ri;
- Kim, Ju Hee;
- Hur, Hoon;
- Lee, Jongkeun;
- Kim, Su-Jin;
- Kwon, Sun Young;
- Lee, Jae-Hyuk;
- Park, Do Youn;
- Song, Kyu Sang;
- Chang, Heekyung;
- Ryu, Min-Hee;
- Cho, Kye Soo;
- Kang, Jeong Won;
- Kook, Myeong-Cherl;
- Thiessen, Nina;
- He, An
Publication type:
Article
Conserved role of intragenic DNA methylation in regulating alternative promoters.
Published in:
Nature, 2010, v. 466, n. 7303, p. 253, doi. 10.1038/nature09165
By:
- Maunakea, Alika K.;
- Nagarajan, Raman P.;
- Bilenky, Mikhail;
- Ballinger, Tracy J.;
- D’Souza, Cletus;
- Fouse, Shaun D.;
- Johnson, Brett E.;
- Hong, Chibo;
- Nielsen, Cydney;
- Zhao, Yongjun;
- Turecki, Gustavo;
- Delaney, Allen;
- Varhol, Richard;
- Thiessen, Nina;
- Shchors, Ksenya;
- Heine, Vivi M.;
- Rowitch, David H.;
- Xiaoyun Xing;
- Fiore, Chris;
- Schillebeeckx, Maximiliaan
Publication type:
Article
IMMU-03. TUMOR NECROSIS FACTOR OVERCOMES IMMUNE EVASION IN P53-MUTANT MEDULLOBLASTOMA.
Published in:
Neuro-Oncology, 2019, v. 21, p. ii93, doi. 10.1093/neuonc/noz036.124
By:
- Garancher, Alexandra;
- Suzuki, Hiromichi;
- Haricharan, Svasti;
- Masihi, Meher Beigi;
- Rusert, Jessica M;
- Norris, Paula S;
- Carrette, Florent;
- Romero, Megan M;
- Morrissy, Sorana A;
- Skowron, Patryk;
- Cavalli, Florence M.G.;
- Farooq, Hamza;
- Ramaswamy, Vijay;
- Jones, Steven J.M.;
- Moore, Richard A;
- Mungall, Andrew J;
- Ma, Yussanne;
- Thiessen, Nina;
- Li, Yisu;
- Morcavallo, Alaide
Publication type:
Article
Whole genome and whole transcriptome genomic profiling of a metastatic eccrine porocarcinoma.
Published in:
NPJ Precision Oncology, 2018, v. 2, n. 1, p. N.PAG, doi. 10.1038/s41698-018-0050-5
By:
- Thibodeau, My Linh;
- Bonakdar, Melika;
- Zhao, Eric;
- Mungall, Karen L.;
- Reisle, Caralyn;
- Zhang, Wei;
- Bye, Morgan H.;
- Thiessen, Nina;
- Bleile, Dustin;
- Mungall, Andrew J.;
- Ma, Yussanne P.;
- Jones, Martin R.;
- Renouf, Daniel J.;
- Lim, Howard J.;
- Yip, Stephen;
- Ng, Tony;
- Ho, Cheryl;
- Laskin, Janessa;
- Marra, Marco A.;
- Schrader, Kasmintan A.
Publication type:
Article
SNP discovery in black cottonwood ( Populus trichocarpa) by population transcriptome resequencing.
Published in:
Molecular Ecology Resources, 2011, v. 11, p. 81, doi. 10.1111/j.1755-0998.2010.02960.x
By:
- GERALDES, ARMANDO;
- PANG, JOHNSON;
- THIESSEN, NINA;
- CEZARD, TIMOTHEE;
- MOORE, RICHARD;
- YONGJUN ZHAO;
- TAM, ANGELA;
- SHUCAI WANG;
- FRIEDMANN, MICHAEL;
- BIROL, INANC;
- JONES, STEVEN J. M.;
- CRONK, QUENTIN C. B.;
- DOUGLAS, CARL J.
Publication type:
Article
Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-550
By:
- Swanson, Lucas;
- Robertson, Gordon;
- Mungall, Karen L.;
- Butterfield, Yaron S.;
- Chiu, Readman;
- Corbett, Richard D.;
- Roderick Docking, T.;
- Hogge, Donna;
- Jackman, Shaun D.;
- Moore, Richard A.;
- Mungall, Andrew J.;
- Nip, Ka Ming;
- Parker, Jeremy D. K.;
- Qian, Jenny Qing;
- Raymond, Anthony;
- Sung, Sandy;
- Tam, Angela;
- Thiessen, Nina;
- Varhol, Richard;
- Wang, Sherry
Publication type:
Article
SDHA Loss-of-Function Mutations in KIT–PDGFRA Wild-Type Gastrointestinal Stromal Tumors Identified by Massively Parallel Sequencing.
Published in:
JNCI: Journal of the National Cancer Institute, 2011, v. 103, n. 12, p. 983, doi. 10.1093/jnci/djr130
By:
- Pantaleo, Maria A.;
- Astolfi, Annalisa;
- Indio, Valentina;
- Moore, Richard;
- Thiessen, Nina;
- Heinrich, Michael C.;
- Gnocchi, Chiara;
- Santini, Donatella;
- Catena, Fausto;
- Formica, Serena;
- Martelli, Pier Luigi;
- Casadio, Rita;
- Pession, Andrea;
- Biasco, Guido
Publication type:
Article

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