Works by TANAKA, MARK M.

Results: 31

Genomic dissection of the microevolution of Australian epidemic Bordetella pertussis.

Published in:

Emerging Microbes & Infections, 2022, v. 11, n. 1, p. 1460, doi. 10.1080/22221751.2022.2077129

By:

Xu, Zheng;
Hu, Dalong;
Luu, Laurence Don Wai;
Octavia, Sophie;
Keil, Anthony D.;
Sintchenko, Vitali;
Tanaka, Mark M.;
Mooi, Frits R.;
Robson, Jenny;
Lan, Ruiting

Publication type:

Article

Genomic analysis of oral Campylobacter concisus strains identified a potential bacterial molecular marker associated with active Crohn's disease.

Published in:

Emerging Microbes & Infections, 2018, v. 7, n. 1, p. 1, doi. 10.1038/s41426-018-0065-6

By:

Liu, Fang;
Ma, Rena;
Tay, Chin Yen Alfred;
Octavia, Sophie;
Lan, Ruiting;
Chung, Heung Kit Leslie;
Riordan, Stephen M.;
Grimm, Michael C.;
Leong, Rupert W.;
Tanaka, Mark M.;
Connor, Susan;
Zhang, Li

Publication type:

Article

Genomic analysis of oral Campylobacter concisus strains identified a potential bacterial molecular marker associated with active Crohn’s disease.

Published in:

Emerging Microbes & Infections, 2018, v. 7, n. 1, p. 1, doi. 10.1038/s41426-018-0065-6

By:

Liu, Fang;
Ma, Rena;
Tay, Chin Yen Alfred;
Octavia, Sophie;
Lan, Ruiting;
Chung, Heung Kit Leslie;
Riordan, Stephen M.;
Grimm, Michael C.;
Leong, Rupert W.;
Tanaka, Mark M.;
Connor, Susan;
Zhang, Li

Publication type:

Article

Optimal estimation of transposition rates of insertion sequences for molecular epidemiology.

Published in:

2001

By:

Tanaka, Mark M.;
Rosenberg, Noah A.;
Tanaka, M M;
Rosenberg, N A

Publication type:

journal article

Multilevel genome typing: genomics-guided scalable resolution typing of microbial pathogens.

Published in:

Eurosurveillance (15607917), 2020, v. 25, n. 20, p. 13, doi. 10.2807/1560-7917.ES.2020.25.20.1900519

By:

Payne, Michael;
Kaur, Sandeep;
Qinning Wang;
Hennessy, Daneeta;
Lijuan Luo;
Octavia, Sophie;
Tanaka, Mark M.;
Sintchenko, Vitali;
Ruiting Lan

Publication type:

Article

Dynamics of bacterial insertion sequences: can transposition bursts help the elements persist?

Published in:

BMC Evolutionary Biology, 2015, v. 15, p. 1, doi. 10.1186/s12862-015-0560-5

By:

Yue Wu;
Aandahl, Richard Z.;
Tanaka, Mark M.

Publication type:

Article

The effects of linkage on comparative estimators of selection.

Published in:

BMC Evolutionary Biology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2148-13-244

By:

Chan, Carmen H. S.;
Hamblin, Steven;
Tanaka, Mark M.

Publication type:

Article

Behavioural manipulation of insect hosts by Baculoviridae as a process of niche construction.

Published in:

BMC Evolutionary Biology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2148-13-170

By:

Hamblin, Steven;
Tanaka, Mark M.

Publication type:

Article

Evolution of variation in presence and absence of genes in bacterial pathways.

Published in:

BMC Evolutionary Biology, 2012, v. 12, n. 1, p. 55, doi. 10.1186/1471-2148-12-55

By:

Francis, Andrew R.;
Tanaka, Mark M.

Publication type:

Article

A Model-Based Bayesian Estimation of the Rate of Evolution of VNTR Loci in Mycobacterium tuberculosis.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002573

By:

Aandahl, R. Zachariah;
Reyes, Josephine F.;
Sisson, Scott A.;
Tanaka, Mark M.

Publication type:

Article

Conditions for the Evolution of Gene Clusters in Bacterial Genomes.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000672

By:

Ballouz, Sara;
Francis, Andrew R.;
Ruiting Lan;
Tanaka, Mark M.

Publication type:

Article

ESCAPING AN EVOLUTIONARY LOBSTER TRAP: DRUG RESISTANCE AND COMPENSATORY MUTATION IN A FLUCTUATING ENVIRONMENT.

Published in:

Evolution, 2011, v. 65, n. 5, p. 1376, doi. 10.1111/j.1558-5646.2011.01223.x

By:

Tanaka, Mark M.;
Valckenborgh, Frank

Publication type:

Article

Exact vs. approximate computation: Reconciling different estimates of Mycobacterium tuberculosis epidemiological parameters.

Published in:

Genetics, 2014, v. 196, n. 4, p. 1227, doi. 10.1534/genetics.113.158808

By:

Aandahl, R. Zachariah;
Stadler, Tanja;
Sisson, Scott A.;
Tanaka, Mark M.

Publication type:

Article

Using Approximate Bayesian Computation to Estimate Tuberculosis Transmission Parameters From Genotype Data.

Published in:

Genetics, 2006, v. 173, n. 3, p. 1511, doi. 10.1534/genetics.106.055574

By:

Tanaka, Mark M.;
Francis, Andrew R.;
Luciani, Fabio;
Sisson, S. A.

Publication type:

Article

The Evolution of Mutator Genes in Bacterial Populations: The Roles of Environmental Change and Timing.

Published in:

Genetics, 2003, v. 164, n. 3, p. 843, doi. 10.1093/genetics/164.3.843

By:

Tanaka, Mark M.;
Bergstrom, Carl T.;
Levin, Bruce R.

Publication type:

Article

The accumulation of P-element-induced recombinants in the germline of male Drosophila melanogaster.

Published in:

Genetics, 1997, v. 147, n. 4, p. 1769, doi. 10.1093/genetics/147.4.1769

By:

Tanaka, Mark M.;
Xiu-Mei Lang

Publication type:

Article

P-element-induced recombination in Drosophila melanogaster: Hybrid element insertion.

Published in:

Genetics, 1996, v. 144, n. 4, p. 1601, doi. 10.1093/genetics/144.4.1601

By:

Gray, Yasmine H.M.;
Tanaka, Mark M.;
Sved, John A.

Publication type:

Article

Clinical Setting Comparative Analysis of Uropathogens and Antibiotic Resistance: A Retrospective Study Spanning the Coronavirus Disease 2019 Pandemic.

Published in:

Open Forum Infectious Diseases, 2024, v. 11, n. 2, p. 1, doi. 10.1093/ofid/ofad676

By:

Young, Alexandra M;
Tanaka, Mark M;
Yuwono, Christopher;
Wehrhahn, Michael C;
Zhang, Li

Publication type:

Article

Evolution of Variable Number Tandem Repeats and Its Relationship with Genomic Diversity in Salmonella Typhimurium.

Published in:

Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.02002

By:

Songzhe Fu;
Sophie Octavia;
Qinning Wang;
Tanaka, Mark M.;
Chin Yen Tay;
Sintchenko, Vitali;
Ruiting Lan

Publication type:

Article

Examination of the effects of Campylobacter concisus zonula occludens toxin on intestinal epithelial cells and macrophages.

Published in:

Gut Pathogens, 2016, v. 8, p. 1, doi. 10.1186/s13099-016-0101-9

By:

Mahendran, Vikneswari;
Fang Liu;
Riordan, Stephen M.;
Grimm, Michael C.;
Tanaka, Mark M.;
Li Zhang

Publication type:

Article

Gut mutualists can persist in host populations despite low fidelity of vertical transmission.

Published in:

Evolutionary Human Sciences, 2022, v. 4, p. 1, doi. 10.1017/ehs.2022.38

By:

Xiyan Xiong;
Loo, Sara L.;
Tanaka, Mark M.

Publication type:

Article

Contingency Loci, Mutator Alleles, and Their Interactions: Synergistic Strategies for Microbial Evolution and Adaptation in Pathogenesis<sup>a</sup>.

Published in:

Annals of the New York Academy of Sciences, 1999, v. 870, n. 1, p. 378, doi. 10.1111/j.1749-6632.1999.tb08907.x

By:

FIELD, DAWN;
MAGNASCO, MARCELO O.;
MOXON, E. RICHARD;
METZGAR, DAVID;
TANAKA, MARK M.;
WILLS, CHRISTOPHER;
THALER, DAVID S.

Publication type:

Article

spolTools: online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex.

Published in:

Bioinformatics, 2008, v. 24, n. 20, p. 2414, doi. 10.1093/bioinformatics/btn434

By:

Chaka Tang;
Josephine F. Reyes;
Fabio Luciani;
Andrew R. Francis;
Mark M. Tanaka

Publication type:

Article

Novel insights into endogenous RNA viral elements in Ixodes scapularis and other arbovirus vector genomes.

Published in:

Virus Evolution, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1093/ve/vez010

By:

Russo, Alice G;
Kelly, Andrew G;
Tuipulotu, Daniel Enosi;
Tanaka, Mark M;
White, Peter A

Publication type:

Article

The Control of Copy Number of IS6110 in Mycobacterium tuberculosis.

Published in:

Molecular Biology & Evolution, 2004, v. 21, n. 12, p. 2195, doi. 10.1093/molbev/msh234

By:

Tanaka, Mark M.;
Rosenberg, Noah A.;
Small, Peter M.

Publication type:

Article

The Dual Landscape Model of Adaptation and Niche Construction.

Published in:

Philosophy of Science, 2020, v. 87, n. 3, p. 478, doi. 10.1086/708692

By:

Tanaka, Mark M.;
Godfrey-Smith, Peter;
Kerr, Benjamin

Publication type:

Article

MGTdb: a web service and database for studying the global and local genomic epidemiology of bacterial pathogens.

Published in:

Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac094

By:

Kaur, Sandeep;
Payne, Michael;
Luo, Lijuan;
Octavia, Sophie;
Tanaka, Mark M;
Sintchenko, Vitali;
Lan, Ruiting

Publication type:

Article

Norovirus Recombination in ORF1/ORF2 Overlap.

Published in:

Emerging Infectious Diseases, 2005, v. 11, n. 7, p. 1079, doi. 10.3201/eid1107.041273

By:

Bull, Rowena A.;
Hansman, Grant S.;
Clancy, Leighton E.;
Tanaka, Mark M.;
Rawlinson, William D.;
White, Peter A.

Publication type:

Article

From Traditional Medicine to Witchcraft: Why Medical Treatments Are Not Always Efficacious.

Published in:

PLoS ONE, 2009, v. 4, n. 4, p. 1, doi. 10.1371/journal.pone.0005192

By:

Tanaka, Mark M.;
Kendal, Jeremy R.;
Laland, Kevin N.

Publication type:

Article

Lifting the veil on arid-to-hyperarid Antarctic soil microbiomes: a tale of two oases.

Published in:

Microbiome, 2020, v. 8, n. 1, p. 1, doi. 10.1186/s40168-020-00809-w

By:

Zhang, Eden;
Thibaut, Loïc M.;
Terauds, Aleks;
Raven, Mark;
Tanaka, Mark M.;
van Dorst, Josie;
Wong, Sin Yin;
Crane, Sally;
Ferrari, Belinda C.

Publication type:

Article

Evidence for positive selection on Mycobacterium tuberculosis within patients.

Published in:

BMC Evolutionary Biology, 2004, v. 4, p. 31, doi. 10.1186/1471-2148-4-31

By:

Tanaka, Mark M.

Publication type:

Article