Found: 22

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  • Symbiosis insights through metagenomic analysis of a microbial consortium.

    Published in:
    Nature, 2006, v. 443, n. 7114, p. 950, doi. 10.1038/nature05192
    By:
    • Woyke, Tanja;
    • Teeling, Hanno;
    • Ivanova, Natalia N.;
    • Huntemann, Marcel;
    • Richter, Michael;
    • Gloeckner, Frank Oliver;
    • Boffelli, Dario;
    • Anderson, Iain J.;
    • Barry, Kerrie W.;
    • Shapiro, Harris J.;
    • Szeto, Ernest;
    • Kyrpides, Nikos C.;
    • Mussmann, Marc;
    • Amann, Rudolf;
    • Bergin, Claudia;
    • Ruehland, Caroline;
    • Rubin, Edward M.;
    • Dubilier, Nicole
    Publication type:
    Article

  • Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0148-8
    By:
    • Huntemann, Marcel;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Tripp, H.;
    • Paez-Espino, David;
    • Palaniappan, Krishnaveni;
    • Szeto, Ernest;
    • Pillay, Manoj;
    • Chen, I-Min;
    • Pati, Amrita;
    • Nielsen, Torben;
    • Markowitz, Victor;
    • Kyrpides, Nikos
    Publication type:
    Article

  • The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0138-x
    By:
    • Huntemann, Marcel;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Tripp, H.;
    • Paez-Espino, David;
    • Tennessen, Kristin;
    • Palaniappan, Krishnaveni;
    • Szeto, Ernest;
    • Pillay, Manoj;
    • Chen, I-Min;
    • Pati, Amrita;
    • Nielsen, Torben;
    • Markowitz, Victor;
    • Kyrpides, Nikos
    Publication type:
    Article

  • The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0077-y
    By:
    • Huntemann, Marcel;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Tripp, H.;
    • Paez-Espino, David;
    • Palaniappan, Krishnaveni;
    • Szeto, Ernest;
    • Pillay, Manoj;
    • Chen, I-Min;
    • Pati, Amrita;
    • Nielsen, Torben;
    • Markowitz, Victor;
    • Kyrpides, Nikos
    Publication type:
    Article

  • Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 359, doi. 10.4056/sigs.4348035
    By:
    • Khanna, Namita;
    • Ghosh, Ananta;
    • Huntemann, Marcel;
    • Deshpande, Shweta;
    • Han, James;
    • Chen, Amy;
    • Kyrpides, Nikos;
    • Mavrommatis, Kostas;
    • Szeto, Ernest;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Pagani, Ioanna;
    • Pati, Amrita;
    • Pitluck, Sam;
    • Nolan, Matt;
    • Woyke, Tanja;
    • Teshima, Hazuki;
    • Chertkov, Olga;
    • Daligault, Hajnalka;
    • Davenport, Karen
    Publication type:
    Article

  • Complete genome sequence of Dehalobacter restrictus PER-K23.

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 375, doi. 10.4056/sigs.3787426
    By:
    • Kruse, Thomas;
    • Maillard, Julien;
    • Goodwin, Lynne;
    • Woyke, Tanja;
    • Teshima, Hazuki;
    • Bruce, David;
    • Detter, Chris;
    • Tapia, Roxanne;
    • Han, Cliff;
    • Huntemann, Marcel;
    • Wei, Chia-Lin;
    • Han, James;
    • Chen, Amy;
    • Kyrpides, Nikos;
    • Szeto, Ernest;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Pagani, Ioanna;
    • Pati, Amrita;
    • Pitluck, Sam
    Publication type:
    Article

  • Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite.

    Published in:
    Nature, 2007, v. 450, n. 7169, p. 560, doi. 10.1038/nature06269
    By:
    • Warnecke, Falk;
    • Luginbühl, Peter;
    • Ivanova, Natalia;
    • Ghassemian, Majid;
    • Richardson, Toby H.;
    • Stege, Justin T.;
    • Cayouette, Michelle;
    • McHardy, Alice C.;
    • Djordjevic, Gordana;
    • Aboushadi, Nahla;
    • Sorek, Rotem;
    • Tringe, Susannah G.;
    • Podar, Mircea;
    • Martin, Hector Garcia;
    • Kunin, Victor;
    • Dalevi, Daniel;
    • Madejska, Julita;
    • Kirton, Edward;
    • Platt, Darren;
    • Szeto, Ernest
    Publication type:
    Article

  • Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system.

    Published in:
    BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2629-y
    By:
    • Chen, I-Min A.;
    • Markowitz, Victor M.;
    • Palaniappan, Krishna;
    • Szeto, Ernest;
    • Chu, Ken;
    • Jinghua Huang;
    • Ratner, Anna;
    • Pillay, Manoj;
    • Hadjithomas, Michalis;
    • Huntemann, Marcel;
    • Mikhailova, Natalia;
    • Ovchinnikova, Galina;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article

  • High-resolution metagenomics targets specific functional types in complex microbial communities.

    Published in:
    Nature Biotechnology, 2008, v. 26, n. 9, p. 1029, doi. 10.1038/nbt.1488
    By:
    • Kalyuzhnaya, Marina G;
    • Lapidus, Alla;
    • Ivanova, Natalia;
    • Copeland, Alex C;
    • McHardy, Alice C;
    • Szeto, Ernest;
    • Salamov, Asaf;
    • Grigoriev, Igor V;
    • Suciu, Dominic;
    • Levine, Samuel R;
    • Markowitz, Victor M;
    • Rigoutsos, Isidore;
    • Tringe, Susannah G;
    • Bruce, David C;
    • Richardson, Paul M;
    • Lidstrom, Mary E;
    • Chistoserdova, Ludmila
    Publication type:
    Article

  • Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities.

    Published in:
    Nature Biotechnology, 2006, v. 24, n. 10, p. 1263, doi. 10.1038/nbt1247
    By:
    • Martín, Héctor García;
    • Ivanova, Natalia;
    • Kunin, Victor;
    • Warnecke, Falk;
    • Barry, Kerrie W.;
    • McHardy, Alice C.;
    • Yeates, Christine;
    • He, Shaomei;
    • Salamov, Asaf A.;
    • Szeto, Ernest;
    • Dalin, Eileen;
    • Putnam, Nik H.;
    • Shapiro, Harris J.;
    • Pangilinan, Jasmyn L.;
    • Rigoutsos, Isidore;
    • Kyrpides, Nikos C.;
    • Blackall, Linda Louise;
    • McMahon, Katherine D.;
    • Hugenholtz, Philip
    Publication type:
    Article

  • IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project.

    Published in:
    PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0040151
    By:
    • Markowitz, Victor M.;
    • Chen, I-Min A.;
    • Chu, Ken;
    • Szeto, Ernest;
    • Palaniappan, Krishna;
    • Jacob, Biju;
    • Ratner, Anna;
    • Liolios, Konstantinos;
    • Pagani, Ioanna;
    • Huntemann, Marcel;
    • Mavromatis, Konstantinos;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article

  • IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.

    Published in:
    Nucleic Acids Research, 2017, v. 45, n. D1, p. D457, doi. 10.1093/nar/gkw1030
    By:
    • Paez-Espino, David;
    • Chen, I.-Min A.;
    • Palaniappan, Krishna;
    • Ratner, Anna;
    • Ken Chu;
    • Szeto, Ernest;
    • Pillay, Manoj;
    • Jinghua Huang;
    • Markowitz, Victor M.;
    • Nielsen, Torben;
    • Huntemann, Marcel;
    • Reddy, T. B. K.;
    • Pavlopoulos, Georgios A.;
    • Sullivan, Matthew B.;
    • Campbell, Barbara J.;
    • Feng Chen;
    • McMahon, Katherine;
    • Hallam, Steve J.;
    • Denef, Vincent;
    • Cavicchioli, Ricardo
    Publication type:
    Article

  • IMG/M: integrated genome and metagenome comparative data analysis system.

    Published in:
    Nucleic Acids Research, 2017, v. 45, n. D1, p. D507, doi. 10.1093/nar/gkw929
    By:
    • Chen, I.-Min A.;
    • Markowitz, Victor M.;
    • Ken Chu;
    • Palaniappan, Krishna;
    • Szeto, Ernest;
    • Pillay, Manoj;
    • Ratner, Anna;
    • Jinghua Huang;
    • Andersen, Evan;
    • Huntemann, Marcel;
    • Varghese, Neha;
    • Hadjithomas, Michalis;
    • Tennessen, Kristin;
    • Nielsen, Torben;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article

  • IMG 4 version of the integrated microbial genomes comparative analysis system.

    Published in:
    Nucleic Acids Research, 2014, v. 42, n. D1, p. D560, doi. 10.1093/nar/gkt963
    By:
    • Markowitz, Victor M.;
    • Chen, I-Min A.;
    • Palaniappan, Krishna;
    • Chu, Ken;
    • Szeto, Ernest;
    • Pillay, Manoj;
    • Ratner, Anna;
    • Huang, Jinghua;
    • Woyke, Tanja;
    • Huntemann, Marcel;
    • Anderson, Iain;
    • Billis, Konstantinos;
    • Varghese, Neha;
    • Mavromatis, Konstantinos;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article

  • IMG/M 4 version of the integrated metagenome comparative analysis system.

    Published in:
    Nucleic Acids Research, 2014, v. 42, n. D1, p. D568, doi. 10.1093/nar/gkt919
    By:
    • Markowitz, Victor M.;
    • Chen, I-Min A.;
    • Chu, Ken;
    • Szeto, Ernest;
    • Palaniappan, Krishna;
    • Pillay, Manoj;
    • Ratner, Anna;
    • Huang, Jinghua;
    • Pagani, Ioanna;
    • Tringe, Susannah;
    • Huntemann, Marcel;
    • Billis, Konstantinos;
    • Varghese, Neha;
    • Tennessen, Kristin;
    • Mavromatis, Konstantinos;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article

  • IMG: the integrated microbial genomes database and comparative analysis system.

    Published in:
    Nucleic Acids Research, 2012, p. D115, doi. 10.1093/nar/gkr1044
    By:
    • Markowitz, Victor M.;
    • Chen, I-Min A.;
    • Palaniappan, Krishna;
    • Chu, Ken;
    • Szeto, Ernest;
    • Grechkin, Yuri;
    • Ratner, Anna;
    • Jacob, Biju;
    • Huang, Jinghua;
    • Williams, Peter;
    • Huntemann, Marcel;
    • Anderson, Iain;
    • Mavromatis, Konstantinos;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article

  • IMG/M: the integrated metagenome data management and comparative analysis system.

    Published in:
    Nucleic Acids Research, 2012, p. D123, doi. 10.1093/nar/gkr975
    By:
    • Markowitz, Victor M.;
    • Chen, I-Min A.;
    • Chu, Ken;
    • Szeto, Ernest;
    • Palaniappan, Krishna;
    • Grechkin, Yuri;
    • Ratner, Anna;
    • Jacob, Biju;
    • Pati, Amrita;
    • Huntemann, Marcel;
    • Liolios, Konstantinos;
    • Pagani, Ioanna;
    • Anderson, Iain;
    • Mavromatis, Konstantinos;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article

  • Annotation of metagenome short reads using proxygenes.

    Published in:
    Bioinformatics, 2008, v. 24, n. 16, p. i7, doi. 10.1093/bioinformatics/btn276
    By:
    • Daniel Dalevi;
    • Natalia N. Ivanova;
    • Konstantinos Mavromatis;
    • Sean D. Hooper;
    • Ernest Szeto;
    • Philip Hugenholtz;
    • Nikos C. Kyrpides;
    • Victor M. Markowitz
    Publication type:
    Article

  • The integrated microbial genomes system: an expanding comparative analysis resource.

    Published in:
    Nucleic Acids Research, 2010, v. 38, p. D382, doi. 10.1093/nar/gkp887
    By:
    • Markowitz, Victor M.;
    • Chen, I-Min A.;
    • Palaniappan, Krishna;
    • Ken Chu;
    • Szeto, Ernest;
    • Grechkin, Yuri;
    • Ratner, Anna;
    • Anderson, Iain;
    • Lykidis, Athanasios;
    • Mavromatis, Konstantinos;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article

  • IMG/M: a data management and analysis system for metagenomes.

    Published in:
    Nucleic Acids Research, 2008, v. 36, p. D534
    By:
    • Markowitz, Victor M.;
    • Ivanova, Natalia N.;
    • Szeto, Ernest;
    • Palaniappan, Krishna;
    • Chu, Ken;
    • Dalevi, Daniel;
    • Chen, I-Min A.;
    • Grechkin, Yuri;
    • Dubchak, Inna;
    • Anderson, Iain;
    • Lykidis, Athanasios;
    • Mavromatis, Konstantinos;
    • Hugenholtz, Philip;
    • Kyrpides, Nikos C.
    Publication type:
    Article

  • The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions.

    Published in:
    Nucleic Acids Research, 2008, v. 36, p. D528
    By:
    • Markowitz, Victor M.;
    • Szeto, Ernest;
    • Palaniappan, Krishna;
    • Grechkin, Yuri;
    • Chu, Ken;
    • Chen, I-Min A.;
    • Dubchak, Inna;
    • Anderson, Iain;
    • Lykidis, Athanasios;
    • Mavromatis, Konstantinos;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article

  • The integrated microbial genomes (IMG) system.

    Published in:
    Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d344, doi. 10.1093/nar/gkj024
    By:
    • Markowitz, Victor M.;
    • Korzeniewski, Frank;
    • Palaniappan, Krishna;
    • Szeto, Ernest;
    • Werner, Greg;
    • Padki, Anu;
    • Zhao, Xueling;
    • Dubchak, Inna;
    • Hugenholtz, Philip;
    • Anderson, Iain;
    • Lykidis, Athanasios;
    • Mavromatis, Konstantinos;
    • Ivanova, Natalia;
    • Kyrpides, Nikos C.
    Publication type:
    Article