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Molecular evolution and diversification of the SMXL gene family.
- Published in:
- Journal of Experimental Botany, 2018, v. 69, n. 9, p. 2367, doi. 10.1093/jxb/ery097
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- Publication type:
- Article
MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update).
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. W1, p. W368, doi. 10.1093/nar/gky309
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- Publication type:
- Article
ChannelsDB: database of biomacromolecular tunnels and pores.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. D1, p. D399, doi. 10.1093/nar/gkx868
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- Publication type:
- Article
ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. D1, p. D369, doi. 10.1093/nar/gku1118
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- Publication type:
- Article
MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. W1, p. W227
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- Publication type:
- Article
MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels.
- Published in:
- Nucleic Acids Research, 2012, v. 40, p. W222, doi. 10.1093/nar/gks363
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- Publication type:
- Article
OverProt: secondary structure consensus for protein families.
- Published in:
- Bioinformatics, 2022, v. 38, n. 14, p. 3648, doi. 10.1093/bioinformatics/btac384
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- Publication type:
- Article
2DProts: database of family-wide protein secondary structure diagrams.
- Published in:
- Bioinformatics, 2021, v. 37, n. 23, p. 4599, doi. 10.1093/bioinformatics/btab505
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- Publication type:
- Article
High-quality and universal empirical atomic charges for chemoinformatics applications.
- Published in:
- Journal of Cheminformatics, 2015, v. 7, p. 1, doi. 10.1186/s13321-015-0107-1
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- Publication type:
- Article
AtomicChargeCalculator: interactive web-based calculation of atomic charges in large biomolecular complexes and drug-like molecules.
- Published in:
- Journal of Cheminformatics, 2015, v. 7, p. 1, doi. 10.1186/s13321-015-0099-x
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- Publication type:
- Article
QM quality atomic charges for proteins.
- Published in:
- 2014
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- Publication type:
- Abstract
Empirical charges for chemoinformatics applications.
- Published in:
- 2014
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- Publication type:
- Abstract
Consistency of sugar structures and their annotation in the PDB.
- Published in:
- 2014
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- Publication type:
- Abstract
MOLE 2.0: advanced approach for analysis of biomacromolecular channels.
- Published in:
- Journal of Cheminformatics, 2013, v. 5, n. 1, p. 1, doi. 10.1186/1758-2946-5-39
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- Publication type:
- Article
Predicting pK<sub>a</sub> values from EEM atomic charges.
- Published in:
- Journal of Cheminformatics, 2013, v. 5, n. 1, p. 1, doi. 10.1186/1758-2946-5-18
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- Publication type:
- Article
How the methodology of 3D structure preparation influences the quality of QSPR models?
- Published in:
- 2012
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- Publication type:
- Abstract
Searching for tunnels of proteins - comparison of approaches and available software tools.
- Published in:
- 2012
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- Publication type:
- Abstract
SiteBinder - an improved approach for comparing multiple protein structural motifs. Case studies on biologically important motifs.
- Published in:
- 2012
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- Publication type:
- Abstract
QSPR designer - employ your own descriptors in the automated QSAR modeling process.
- Published in:
- 2012
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- Publication type:
- Abstract
Anatomy of enzyme channels.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/s12859-014-0379-x
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- Publication type:
- Article
NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges.
- Published in:
- Journal of Cheminformatics, 2016, v. 8, p. 1, doi. 10.1186/s13321-016-0171-1
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- Publication type:
- Article
Serum tenascin-C discriminates patients with active SLE from inactive patients and healthy controls and predicts the need to escalate immunosuppressive therapy: a cohort study.
- Published in:
- Arthritis Research & Therapy, 2015, v. 17, p. 1, doi. 10.1186/s13075-015-0862-4
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- Publication type:
- Article
Charge Profile Analysis Reveals That Activation of Proapoptotic Regulators Bax and Bak Relies on Charge Transfer Mediated Allosteric Regulation.
- Published in:
- PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002565
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- Publication type:
- Article
BinaryCIF and CIFTools—Lightweight, efficient and extensible macromolecular data management.
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- PLoS Computational Biology, 2020, v. 16, n. 10, p. 1, doi. 10.1371/journal.pcbi.1008247
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- Publication type:
- Article
High‐performance macromolecular data delivery and visualization for the web. Corrigendum.
- Published in:
- Acta Crystallographica: Section D, Structural Biology, 2021, v. 77, n. 1, p. 126, doi. 10.1107/S205979832001606X
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- Publication type:
- Article
High‐performance macromolecular data delivery and visualization for the web.
- Published in:
- Acta Crystallographica: Section D, Structural Biology, 2020, v. 76, n. 12, p. 1167, doi. 10.1107/S2059798320014515
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- Publication type:
- Article
Worldwide Protein Data Bank validation information: usage and trends.
- Published in:
- Acta Crystallographica: Section D, Structural Biology, 2018, v. 74, n. 3, p. 237, doi. 10.1107/S2059798318003303
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- Publication type:
- Article
Validation of ligands in macromolecular structures determined by X‐ray crystallography.
- Published in:
- Acta Crystallographica: Section D, Structural Biology, 2018, v. 74, n. 3, p. 228, doi. 10.1107/S2059798318002541
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- Publication type:
- Article
Uncovering of cytochrome P450 anatomy by SecStrAnnotator.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-91494-8
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- Publication type:
- Article
AlphaFind: discover structure similarity across the proteome in AlphaFold DB.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. W1, p. W182, doi. 10.1093/nar/gkae397
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- Publication type:
- Article
ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. D1, p. D413, doi. 10.1093/nar/gkad1012
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- Publication type:
- Article
Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. W1, p. W326, doi. 10.1093/nar/gkad411
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- Publication type:
- Article
αCharges: partial atomic charges for AlphaFold structures in high quality.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. W1, p. W11, doi. 10.1093/nar/gkad349
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- Publication type:
- Article
Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures.
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- Nucleic Acids Research, 2021, v. 49, n. W1, p. W431, doi. 10.1093/nar/gkab314
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- Publication type:
- Article
Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. W1, p. W591, doi. 10.1093/nar/gkaa367
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- Publication type:
- Article
IPMA STANDARD ELEMENTS AND FEEDBACK IN PROJECT MANAGEMENT TEACHING.
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- Journal of Efficiency & Responsibility in Education & Science, 2011, v. 4, n. 3, p. 142
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- Publication type:
- Article
Correction to: Optimized SQE atomic charges for peptides accessible via a web application.
- Published in:
- 2021
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- Publication type:
- Correction Notice
Optimized SQE atomic charges for peptides accessible via a web application.
- Published in:
- Journal of Cheminformatics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13321-021-00528-w
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- Publication type:
- Article
Optimized SQE atomic charges for peptides accessible via a web application.
- Published in:
- Journal of Cheminformatics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13321-021-00528-w
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- Publication type:
- Article
Software news and updates electronegativity equalization method: Parameterization and validation for organic molecules using the Merz-Kollman-Singh charge distribution scheme.
- Published in:
- Journal of Computational Chemistry, 2009, v. 30, n. 7, p. 1174, doi. 10.1002/jcc.21142
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- Publication type:
- Article
SugarSketcher: Quick and Intuitive Online Glycan Drawing.
- Published in:
- Molecules, 2018, v. 23, n. 12, p. 3206, doi. 10.3390/molecules23123206
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- Publication type:
- Article
The Eighth Central European Conference “Chemistry towards Biology”: Snapshot.
- Published in:
- Molecules, 2016, v. 21, n. 10, p. 1381, doi. 10.3390/molecules21101381
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- Publication type:
- Article
Molecular Evolution and Diversification of Proteins Involved in miRNA Maturation Pathway.
- Published in:
- Plants (2223-7747), 2020, v. 9, n. 3, p. 299, doi. 10.3390/plants9030299
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- Publication type:
- Article
The bio.tools registry of software tools and data resources for the life sciences.
- Published in:
- 2019
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- Publication type:
- Letter
ValTrendsDB: bringing Protein Data Bank validation information closer to the user.
- Published in:
- Bioinformatics, 2019, v. 35, n. 24, p. 5389, doi. 10.1093/bioinformatics/btz532
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- Publication type:
- Article
PDBsum: Structural summaries of PDB entries.
- Published in:
- Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 129, doi. 10.1002/pro.3289
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- Publication type:
- Article