Works by Svergun, Dmitri I.

Results: 138

Superhelical Architecture of the Myosin Filament-Linking Protein Myomesin with Unusual Elastic Properties.

Published in:

PLoS Biology, 2012, v. 10, n. 2, p. 1, doi. 10.1371/journal.pbio.1001261

By:

Pinotsis, Nikos;
Chatziefthimiou, Spyros D.;
Berkemeier, Felix;
Beuron, Fabienne;
Mavridis, Irene M.;
Konarev, Petr V.;
Svergun, Dmitri I.;
Morris, Edward;
Rief, Matthias;
Wilmanns, Matthias

Publication type:

Article

A Helical Structural Nucleus Is the Primary Elongating Unit of Insulin Amyloid Fibrils.

Published in:

PLoS Biology, 2007, v. 5, n. 5, p. e134, doi. 10.1371/journal.pbio.0050134

By:

Vestergaard, Bente;
Groenning, Minna;
Roessle, Manfred;
Kastrup, Jette S.;
de Weert, Marco van;
Flink, James M;
Frokjaer, Sven;
Gajhede, Michael;
Svergun, Dmitri I

Publication type:

Article

Fine-tuning of intrinsic N-Oct-3 POU domain allostery by regulatory DNA targets.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 13, p. 4420, doi. 10.1093/nar/gkm453

By:

Alazard, Robert;
Mourey, Lionel;
Ebel, Christine;
Konarev, Peter V.;
Petoukhov, Maxim V.;
Svergun, Dmitri I.;
Erard, Monique

Publication type:

Article

Release Factors 2 from Escherichia coli and Thermus thermophilus: structural, spectroscopic and microcalorimetric studies.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 4, p. 1343, doi. 10.1093/nar/gkl696

By:

Zoldák, Gabriel;
Redecke, Lars;
Svergun, Dmitri I.;
Konarev, Peter V.;
Voertler, C. Stefan;
Dobbek, Holger;
Sedlák, Erik;
Sprinzl, Mathias

Publication type:

Article

ATSAS 3.0: expanded functionality and new tools for small‐angle scattering data analysis.

Published in:

Journal of Applied Crystallography, 2021, v. 54, n. 1, p. 343, doi. 10.1107/S1600576720013412

By:

Manalastas-Cantos, Karen;
Konarev, Petr V.;
Hajizadeh, Nelly R.;
Kikhney, Alexey G.;
Petoukhov, Maxim V.;
Molodenskiy, Dmitry S.;
Panjkovich, Alejandro;
Mertens, Haydyn D. T.;
Gruzinov, Andrey;
Borges, Clemente;
Jeffries, Cy M.;
Svergun, Dmitri I.;
Franke, Daniel

Publication type:

Article

Restoring structural parameters of lipid mixtures from small‐angle X‐ray scattering data.

Published in:

Journal of Applied Crystallography, 2021, v. 54, n. 1, p. 169, doi. 10.1107/S1600576720015368

By:

Konarev, Petr V.;
Gruzinov, Andrey Yu.;
Mertens, Haydyn D. T.;
Svergun, Dmitri I.

Publication type:

Article

Simulation of small‐angle X‐ray scattering data of biological macromolecules in solution.

Published in:

Journal of Applied Crystallography, 2020, v. 53, n. 2, p. 536, doi. 10.1107/S1600576720000527

By:

Franke, Daniel;
Hajizadeh, Nelly R.;
Svergun, Dmitri I.

Publication type:

Article

BILMIX: a new approach to restore the size polydispersity and electron density profiles of lipid bilayers from liposomes using small‐angle X‐ray scattering data.

Published in:

Journal of Applied Crystallography, 2020, v. 53, n. 1, p. 236, doi. 10.1107/S1600576719015656

By:

Konarev, Petr V.;
Petoukhov, Maxim V.;
Dadinova, Liubov A.;
Fedorova, Natalia V.;
Volynsky, Pavel E.;
Svergun, Dmitri I.;
Batishchev, Oleg V.;
Shtykova, Eleonora V.

Publication type:

Article

Rapid automated superposition of shapes and macromolecular models using spherical harmonics.

Published in:

Journal of Applied Crystallography, 2016, v. 49, n. 3, p. 953, doi. 10.1107/S1600576716005793

By:

Konarev, Petr V.;
Petoukhov, Maxim V.;
Svergun, Dmitri I.

Publication type:

Article

Versatile sample environments and automation for biological solution X-ray scattering experiments at the P12 beamline (PETRA III, DESY).

Published in:

Journal of Applied Crystallography, 2015, v. 48, n. 2, p. 431, doi. 10.1107/S160057671500254X

By:

Blanchet, Clement E.;
Spilotros, Alessandro;
Schwemmer, Frank;
Graewert, Melissa A.;
Kikhney, Alexey;
Jeffries, Cy M.;
Franke, Daniel;
Mark, Daniel;
Zengerle, Roland;
Cipriani, Florent;
Fiedler, Stefan;
Roessle, Manfred;
Svergun, Dmitri I.

Publication type:

Article

Instrumental setup for high-throughput small- and wide-angle solution scattering at the X33 beamline of EMBL Hamburg.

Published in:

Journal of Applied Crystallography, 2012, v. 45, n. 3, p. 489, doi. 10.1107/S0021889812013490

By:

Blanchet, Clement E.;
Zozulya, Alexey V.;
Kikhney, Alexey G.;
Franke, Daniel;
Konarev, Peter V.;
Shang, Weifeng;
Klaering, Robbert;
Robrahn, Bernd;
Hermes, Christoph;
Cipriani, Florent;
Svergun, Dmitri I.;
Roessle, Manfred

Publication type:

Article

New developments in the ATSAS program package for small-angle scattering data analysis.

Published in:

Journal of Applied Crystallography, 2012, v. 45, n. 2, p. 342, doi. 10.1107/S0021889812007662

By:

Petoukhov, Maxim V.;
Franke, Daniel;
Shkumatov, Alexander V.;
Tria, Giancarlo;
Kikhney, Alexey G.;
Gajda, Michal;
Gorba, Christian;
Mertens, Haydyn D. T.;
Konarev, Petr V.;
Svergun, Dmitri I.

Publication type:

Article

DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering.

Published in:

2009

By:

Franke, Daniel;
Svergun, Dmitri I.

Publication type:

Product Review

Accuracy of molecular mass determination of proteins in solution by small-angle X-ray scattering.

Published in:

Journal of Applied Crystallography, 2007, v. 40, p. s245, doi. 10.1107/S002188980700252X

By:

Mylonas, Efstratios;
Svergun, Dmitri I.

Publication type:

Article

ATSAS 2.1 – towards automated and web-supported small-angle scattering data analysis.

Published in:

Journal of Applied Crystallography, 2007, v. 40, p. s223, doi. 10.1107/S0021889807002853

By:

Petoukhov, Maxim V.;
Konarev, Peter V.;
Kikhney, Alexey G.;
Svergun, Dmitri I.

Publication type:

Article

Small-angle scattering studies of macromolecular solutions.

Published in:

Journal of Applied Crystallography, 2007, v. 40, p. s10, doi. 10.1107/S0021889807001409

By:

Svergun, Dmitri I.

Publication type:

Article

ATSAS 2.1, a program package for small-angle scattering data analysis.

Published in:

2006

By:

Konarev, Petr V.;
Volkov, Vladimir V.;
Petoukhov, Maxim V.;
Svergun, Dmitri I.

Publication type:

Other

PRIMUS: a Windows PC-based system for small-angle scattering data analysis.

Published in:

Journal of Applied Crystallography, 2003, v. 36, n. 5, p. 1277, doi. 10.1107/S0021889803012779

By:

Konarev, Petr V.;
Volkov, Vladimir V.;
Sokolova, Anna V.;
Koch, Michel H. J.;
Svergun, Dmitri I.

Publication type:

Article

Prototype of a database for rapid protein classification based on solution scattering data.

Published in:

Journal of Applied Crystallography, 2003, v. 36, n. 3-1, p. 865, doi. 10.1107/S0021889803000220

By:

Sokolova, Anna V.;
Volkov, Vladimir V.;
Svergun, Dmitri I.

Publication type:

Article

Uniqueness of ab initio shape determination in small-angle scattering.

Published in:

Journal of Applied Crystallography, 2003, v. 36, n. 3-1, p. 860, doi. 10.1107/S0021889803000268

By:

Volkov, Vladimir V.;
Svergun, Dmitri I.

Publication type:

Article

Small-angle X-ray scattering reveals hollow nanostructures in &...; and κ- carrageenan/surfactant complexes.

Published in:

Journal of Applied Crystallography, 2003, v. 36, n. 3-1, p. 669, doi. 10.1107/S0021889803006198

By:

Shtykova, Eleonora V.;
Shtykova Jr., Evgenia V.;
Volkov, Vladimir V.;
Konarev, Petr V.;
Dembo, Alexander T.;
Makhaeva, Elena E.;
Ronova, Inga A.;
Khokhlov, Alexej R.;
Reynaers, Harry;
Svergun, Dmitri I.

Publication type:

Article

New methods for domain structure determination of proteins from solution scattering data.

Published in:

Journal of Applied Crystallography, 2003, v. 36, n. 3-1, p. 540, doi. 10.1107/S0021889803000591

By:

Petoukhov, Maxim V.;
Svergun, Dmitri I.

Publication type:

Article

Low-resolution structure of immunoglobulins IgG, IgM and rheumatoid factor IgM-RF from solution X-ray scattering data.

Published in:

Journal of Applied Crystallography, 2003, v. 36, n. 3-1, p. 503, doi. 10.1107/S0021889803005156

By:

Volkov, Vladimir V.;
Lapuk, Viktor A.;
Kayushina, Renata L.;
Shtykova, Eleonora V.;
Yu. Varlamova, Elena;
Malfois, Mark;
Svergun, Dmitri I.

Publication type:

Article

sasCIF: an extension of core Crystallographic Information File for SAS.

Published in:

Journal of Applied Crystallography, 2000, v. 33, n. 3, p. 812, doi. 10.1107/S0021889800001357

By:

Malfois, Marc;
Svergun, Dmitri I.

Publication type:

Article

A software system for rigid-body modelling of solution scattering data.

Published in:

Journal of Applied Crystallography, 2000, v. 33, n. 3, p. 775, doi. 10.1107/S0021889800001382

By:

Kozin, Mikhail B.;
Svergun, Dmitri I.

Publication type:

Article

Advanced solution scattering data analysis methods and their applications.

Published in:

Journal of Applied Crystallography, 2000, v. 33, n. 3, p. 530, doi. 10.1107/S0021889800001370

By:

Svergun, Dmitri I.

Publication type:

Article

EFAMIX, a tool to decompose inline chromatography SAXS data from partially overlapping components.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 1, p. 269, doi. 10.1002/pro.4237

By:

Konarev, Petr V.;
Graewert, Melissa A.;
Jeffries, Cy M.;
Fukuda, Masakazu;
Cheremnykh, Taisiia A.;
Volkov, Vladimir V.;
Svergun, Dmitri I.

Publication type:

Article

SASBDB: Towards an automatically curated and validated repository for biological scattering data.

Published in:

Protein Science: A Publication of the Protein Society, 2020, v. 29, n. 1, p. 66, doi. 10.1002/pro.3731

By:

Kikhney, Alexey G.;
Borges, Clemente R.;
Molodenskiy, Dmitry S.;
Jeffries, Cy M.;
Svergun, Dmitri I.

Publication type:

Article

Human MICAL1: Activation by the small GTPase Rab8 and small‐angle X‐ray scattering studies on the oligomerization state of MICAL1 and its complex with Rab8.

Published in:

Protein Science: A Publication of the Protein Society, 2019, v. 28, n. 1, p. 150, doi. 10.1002/pro.3512

By:

Esposito, Alessandro;
Ventura, Valeria;
Petoukhov, Maxim V.;
Rai, Amrita;
Svergun, Dmitri I.;
Vanoni, Maria A.

Publication type:

Article

Solution Structures of PPARγ2/RXRα Complexes.

Published in:

PPAR Research, 2012, p. 1, doi. 10.1155/2012/701412

By:

Osz, Judit;
Pethoukhov, Maxim V.;
Sirigu, Serena;
Svergun, Dmitri I.;
Moras, Dino;
Rochel, Natacha

Publication type:

Article

Insights into complement convertase formation based on the structure of the factor B-cobra venom factor complex.

Published in:

EMBO Journal, 2009, v. 28, n. 16, p. 2469, doi. 10.1038/emboj.2009.184

By:

Janssen, Bert J. C.;
Gomes, Lucio;
Koning, Roman I.;
Svergun, Dmitri I.;
Koster, Abraham J.;
Fritzinger, David C.;
Vogel, Carl-Wilhelm;
Gros, Piet

Publication type:

Article

Molecular basis of the C-terminal tail-to-tail assembly of the sarcomeric filament protein myomesin.

Published in:

EMBO Journal, 2008, v. 27, n. 1, p. 253, doi. 10.1038/sj.emboj.7601944

By:

Pinotsis, Nikos;
Lange, Stephan;
Perriard, Jean-Claude;
Svergun, Dmitri I.;
Wilmanns, Matthias

Publication type:

Article

Interaction between the C-terminal region of human myelin basic protein and calmodulin: analysis of complex formation and solution structure.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-10

By:

Majava, Viivi;
Petoukhov, Maxim V.;
Hayashi, Nobuhiro;
Pirilä, Päivi;
Svergun, Dmitri I.;
Kursula, Petri

Publication type:

Article

Correction: pUL21 is a viral phosphatase adaptor that promotes herpes simplex virus replication and spread.

Published in:

2022

By:

Benedyk, Tomasz H.;
Muenzner, Julia;
Connor, Viv;
Han, Yue;
Brown, Katherine;
Wijesinghe, Kaveesha J.;
Zhuang, Yunhui;
Colaco, Susanna;
Stoll, Guido A.;
Tutt, Owen S.;
Svobodova, Stanislava;
Svergun, Dmitri I.;
Bryant, Neil A.;
Deane, Janet E.;
Firth, Andrew E.;
Jeffries, Cy M.;
Crump, Colin M.;
Graham, Stephen C.

Publication type:

Correction Notice

pUL21 is a viral phosphatase adaptor that promotes herpes simplex virus replication and spread.

Published in:

PLoS Pathogens, 2021, v. 17, n. 8, p. 1, doi. 10.1371/journal.ppat.1009824

By:

Benedyk, Tomasz H.;
Muenzner, Julia;
Connor, Viv;
Han, Yue;
Brown, Katherine;
Wijesinghe, Kaveesha J.;
Zhuang, Yunhui;
Colaco, Susanna;
Stoll, Guido A.;
Tutt, Owen S.;
Svobodova, Stanislava;
Svergun, Dmitri I.;
Bryant, Neil A.;
Deane, Janet E.;
Firth, Andrew E.;
Jeffries, Cy M.;
Crump, Colin M.;
Graham, Stephen C.

Publication type:

Article

Small-angle X-ray and neutron scattering as a tool for structural systems biology.

Published in:

Biological Chemistry, 2010, v. 391, n. 7, p. 737, doi. 10.1515/BC.2010.093

By:

Svergun, Dmitri I.

Publication type:

Article

A coiled-coil domain acts as a molecular ruler to regulate O-antigen chain length in lipopolysaccharide.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 1, p. 50, doi. 10.1038/nsmb.2935

By:

Hagelueken, Gregor;
Clarke, Bradley R;
Huang, Hexian;
Tuukkanen, Anne;
Danciu, Iulia;
Svergun, Dmitri I;
Hussain, Rohanah;
Liu, Huanting;
Whitfield, Chris;
Naismith, James H

Publication type:

Article

Allosteric competitive inactivation of hematopoietic CSF-1 signaling by the viral decoy receptor BARF1.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 9, p. 938, doi. 10.1038/nsmb.2367

By:

Elegheert, Jonathan;
Bracke, Nathalie;
Pouliot, Philippe;
Gutsche, Irina;
Shkumatov, Alexander V;
Tarbouriech, Nicolas;
Verstraete, Kenneth;
Bekaert, Anaïs;
Burmeister, Wim P;
Svergun, Dmitri I;
Lambrecht, Bart N;
Vergauwen, Bjorn;
Savvides, Savvas N

Publication type:

Article

Common architecture of nuclear receptor heterodimers on DNA direct repeat elements with different spacings.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 5, p. 564, doi. 10.1038/nsmb.2054

By:

Rochel, Natacha;
Ciesielski, Fabrice;
Godet, Julien;
Moman, Edelmiro;
Roessle, Manfred;
Peluso-Iltis, Carole;
Moulin, Martine;
Haertlein, Michael;
Callow, Phil;
Mély, Yves;
Svergun, Dmitri I.;
Moras, Dino

Publication type:

Article

Structural basis for engagement by complement factor H of C3b on a self surface.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 4, p. 463, doi. 10.1038/nsmb.2018

By:

Morgan, Hugh P.;
Schmidt, Christoph Q.;
Guariento, Mara;
Blaum, Bärbel S.;
Gillespie, Dominic;
Herbert, Andrew P.;
Kavanagh, David;
Mertens, Haydyn D. T.;
Svergun, Dmitri I.;
Johansson, Conny M.;
Uhrín, Dušan;
Barlow, Paul N.;
Hannan, Jonathan P.

Publication type:

Article

Molecular basis of F-actin regulation and sarcomere assembly via myotilin.

Published in:

PLoS Biology, 2021, v. 19, n. 4, p. 1, doi. 10.1371/journal.pbio.3001148

By:

Kostan, Julius;
Pavšič, Miha;
Puž, Vid;
Schwarz, Thomas C.;
Drepper, Friedel;
Molt, Sibylle;
Graewert, Melissa Ann;
Schreiner, Claudia;
Sajko, Sara;
van der Ven, Peter F. M.;
Onipe, Adekunle;
Svergun, Dmitri I.;
Warscheid, Bettina;
Konrat, Robert;
Fürst, Dieter O.;
Lenarčič, Brigita;
Djinović-Carugo, Kristina

Publication type:

Article

Structural basis for activation of plasma-membrane Ca<sup>2+</sup>-ATPase by calmodulin.

Published in:

Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0203-7

By:

Nitsche, Julius;
Josts, Inokentijs;
Heidemann, Johannes;
Mertens, Haydyn D.;
Maric, Selma;
Moulin, Martine;
Haertlein, Michael;
Busch, Sebastian;
Forsyth, V. Trevor;
Svergun, Dmitri I.;
Uetrecht, Charlotte;
Tidow, Henning

Publication type:

Article

Molecular model of a sensor of two-component signaling system.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-89613-6

By:

Ryzhykau, Yury L.;
Orekhov, Philipp S.;
Rulev, Maksim I.;
Vlasov, Alexey V.;
Melnikov, Igor A.;
Volkov, Dmytro A.;
Nikolaev, Mikhail Yu.;
Zabelskii, Dmitrii V.;
Murugova, Tatiana N.;
Chupin, Vladimir V.;
Rogachev, Andrey V.;
Gruzinov, Andrey Yu.;
Svergun, Dmitri I.;
Brennich, Martha E.;
Gushchin, Ivan Yu.;
Soler-Lopez, Montserrat;
Bothe, Arne;
Büldt, Georg;
Leonard, Gordon;
Engelhard, Martin

Publication type:

Article

An automated data processing and analysis pipeline for transmembrane proteins in detergent solutions.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-64933-1

By:

Molodenskiy, Dmitry S.;
Mertens, Haydyn D. T.;
Svergun, Dmitri I.

Publication type:

Article

Selective deuteration of tryptophan and methionine residues in maltose binding protein: a model system for neutron scattering.

Published in:

European Biophysics Journal, 2008, v. 37, n. 6, p. 815, doi. 10.1007/s00249-008-0280-5

By:

Laux, Valerie;
Callow, Phil;
Svergun, Dmitri I.;
Timmins, Peter A.;
Forsyth, V. Trevor;
Haertlein, Michael

Publication type:

Article

Joint use of small-angle X-ray and neutron scattering to study biological macromolecules in solution.

Published in:

European Biophysics Journal, 2006, v. 35, n. 7, p. 567, doi. 10.1007/s00249-006-0063-9

By:

Petoukhov, Maxim V.;
Svergun, Dmitri I.

Publication type:

Article

Quantitative 3D determination of self-assembled structures on nanoparticles using small angle neutron scattering.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03699-7

By:

Zhi Luo;
Marson, Domenico;
Ong, Quy K.;
Loiudice, Anna;
Kohlbrecher, Joachim;
Radulescu, Aurel;
Krause-Heuer, Anwen;
Darwish, Tamim;
Balog, Sandor;
Buonsanti, Raffaella;
Svergun, Dmitri I.;
Posocco, Paola;
Stellacci, Francesco

Publication type:

Article

Epsin and Sla2 form assemblies through phospholipid interfaces.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-017-02443-x

By:

Garcia-Alai, Maria M.;
Heidemann, Johannes;
Skruzny, Michal;
Gieras, Anna;
Mertens, Haydyn D. T.;
Svergun, Dmitri I.;
Kaksonen, Marko;
Uetrecht, Charlotte;
Meijers, Rob

Publication type:

Article

Large differences are observed between the crystal and solution quaternary structures of allosteric aspartate transcarbamylase in the R state.

Published in:

Proteins, 1997, v. 27, n. 1, p. 110, doi. 10.1002/(SICI)1097-0134(199701)27:1<110::AID-PROT11>3.0.CO;2-Q

By:

Svergun, Dmitri I.;
Barberato, Claudio;
Koch, Michel H. J.;
Fetler, Luc;
Vachette, Patrice

Publication type:

Article

Molecular insights into the self-assembly mechanism of dystrophia myotonica kinase.

Published in:

FASEB Journal, 2006, v. 20, n. 8, p. 1142, doi. 10.1096/fj.05-5262com

By:

Garcia, Pilar;
Ucurum, Zöhre;
Bucher, Rainer;
Svergun, Dmitri I.;
Huber, Thomas;
Lusting, Ariel;
Konarev, Petr V.;
Marino, Marco;
Mayans, Olga

Publication type:

Article