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Comparative DNA methylomic analyses reveal potential origins of novel epigenetic biomarkers of insulin resistance in monocytes from virally suppressed HIV-infected adults.
Published in:
Clinical Epigenetics, 2019, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13148-019-0694-1
By:
- Dye, Christian K.;
- Corley, Michael J.;
- Li, Dongmei;
- Khadka, Vedbar S.;
- Mitchell, Brooks I.;
- Sultana, Razvan;
- Lum-Jones, Annette;
- Shikuma, Cecilia M.;
- Ndhlovu, Lishomwa C.;
- Maunakea, Alika K.
Publication type:
Article
GeneSigDB: a manually curated database and resource for analysis of gene expression signatures.
Published in:
Nucleic Acids Research, 2012, p. D1060, doi. 10.1093/nar/gkr901
By:
- Culhane, Aedín C.;
- Schröder, Markus S.;
- Sultana, Razvan;
- Picard, Shaita C.;
- Martinelli, Enzo N.;
- Kelly, Caroline;
- Haibe-Kains, Benjamin;
- Kapushesky, Misha;
- St Pierre, Anne-Alyssa;
- Flahive, William;
- Picard, Kermshlise C.;
- Gusenleitner, Daniel;
- Papenhausen, Gerald;
- O'Connor, Niall;
- Correll, Mick;
- Quackenbush, John
Publication type:
Article
GeneSigDB--a curated database of gene expression signatures.
Published in:
Nucleic Acids Research, 2010, v. 38, p. D716, doi. 10.1093/nar/gkp1015
By:
- Culhane, Aedín C.;
- Schwarzl, Thomas;
- Sultana, Razvan;
- Picard, Kermshlise C.;
- Picard, Shaita C.;
- Lu, Tim H.;
- Franklin, Katherine R.;
- French, Simon J.;
- Papenhausen, Gerald;
- Correll, Mick;
- Quackenbush, John
Publication type:
Article
Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis.
Published in:
Nature Genetics, 2013, v. 45, n. 10, p. 1183, doi. 10.1038/ng.2747
By:
- Farhat, Maha R;
- Shapiro, B Jesse;
- Kieser, Karen J;
- Sultana, Razvan;
- Jacobson, Karen R;
- Victor, Thomas C;
- Warren, Robin M;
- Streicher, Elizabeth M;
- Calver, Alistair;
- Sloutsky, Alex;
- Kaur, Devinder;
- Posey, Jamie E;
- Plikaytis, Bonnie;
- Oggioni, Marco R;
- Gardy, Jennifer L;
- Johnston, James C;
- Rodrigues, Mabel;
- Tang, Patrick K C;
- Kato-Maeda, Midori;
- Borowsky, Mark L
Publication type:
Article
Physiogenomic resources for rat models of heart, lung and blood disorders.
Published in:
Nature Genetics, 2006, v. 38, n. 2, p. 234, doi. 10.1038/ng1693
By:
- Malek, Renae L.;
- Hong-ying Wang;
- Kwitek, Anne E.;
- Greene, Andrew S.;
- Bhagabati, Nirmal;
- Borchardt, Gretta;
- Cahill, Lisa;
- Currier, Tracey;
- Frank, Bryan;
- Xianping Fu;
- Hasinoff, Michael;
- Howe, Eleanor;
- Letwin, Noah;
- Luu, Truong V.;
- Saeed, Alexander;
- Sajadi, Hedieh;
- Salzberg, Steven L.;
- Sultana, Razvan;
- Thiagarajan, Mathangi;
- Tsai, Jennifer
Publication type:
Article
Independence and reproducibility across microarray platforms.
Published in:
Nature Methods, 2005, v. 2, n. 5, p. 337, doi. 10.1038/nmeth757
By:
- Larkin, Jennie E.;
- Frank, Bryan C.;
- Gavras, Haralambos;
- Sultana, Razvan;
- Quackenbush, John
Publication type:
Article
Therapeutic Implications of GIPC1 Silencing in Cancer.
Published in:
PLoS ONE, 2010, v. 5, n. 12, p. 1, doi. 10.1371/journal.pone.0015581
By:
- Chittenden, Thomas W.;
- Pak, Jane;
- Rubio, Renee;
- Hailing Cheng;
- Holton, Kristina;
- Prendergast, Niall;
- Glinskii, Vladimir;
- Yi Cai;
- Culhane, Aedin;
- Bentink, Stefan;
- Schwede, Mathew;
- Mar, Jessica C.;
- Howe, Eleanor A.;
- Aryee, Martin;
- Sultana, Razvan;
- Lanahan, Anthony A.;
- Taylor, Jennifer M.;
- Holmes, Chris;
- Hahn, William C.;
- Zhao, Jean J.
Publication type:
Article
Genetic Determinants of Drug Resistance in Mycobacterium tuberculosis and Their Diagnostic Value.
Published in:
2016
By:
- Farhat, Maha R.;
- Sultana, Razvan;
- Iartchouk, Oleg;
- Bozeman, Sam;
- Galagan, James;
- Sisk, Peter;
- Stolte, Christian;
- Nebenzahl-Guimaraes, Hanna;
- Jacobson, Karen;
- Sloutsky, Alexander;
- Kaur, Devinder;
- Posey, James;
- Kreiswirth, Barry N.;
- Kurepina, Natalia;
- Rigouts, Leen;
- Streicher, Elizabeth M.;
- Victor, Tommie C.;
- Warren, Robin M.;
- van Soolingen, Dick;
- Murray, Megan
Publication type:
journal article
Estimation of sequencing error rates in short reads.
Published in:
BMC Bioinformatics, 2012, v. 13, n. 1, p. 185, doi. 10.1186/1471-2105-13-185
By:
- Wang, Xin Victoria;
- Blades, Natalie;
- Ding, Jie;
- Sultana, Razvan;
- Parmigiani, Giovanni
Publication type:
Article
Epigenetic Delay in the Neurodevelopmental Trajectory of DNA Methylation States in Autism Spectrum Disorders.
Published in:
Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.00907
By:
- Corley, Michael J.;
- Vargas-Maya, Nauru;
- Pang, Alina P. S.;
- Lum-Jones, Annette;
- Li, Dongmei;
- Khadka, Vedbar;
- Sultana, Razvan;
- Blanchard, D. Caroline;
- Maunakea, Alika K.
Publication type:
Article
The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists.
Published in:
Nucleic Acids Research, 2003, v. 31, n. 1, p. 229, doi. 10.1093/nar/gkg059
By:
- Yuan, Qiaoping;
- Ouyang, Shu;
- Liu, Jia;
- Suh, Bernard;
- Cheung, Foo;
- Sultana, Razvan;
- Lee, Dan;
- Quackenbush, John;
- Buell, C. Robin
Publication type:
Article
The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species.
Published in:
Nucleic Acids Research, 2001, v. 29, n. 1, p. 159, doi. 10.1093/nar/29.1.159
By:
- Quackenbush, John;
- Cho, Jennifer;
- Lee, Daniel;
- Liang, Feng;
- Holt, Ingeborg;
- Karamycheva, Svetlana;
- Parvizi, Babak;
- Pertea, Geo;
- Sultana, Razvan;
- White, Joseph
Publication type:
Article
Supporting Native Hawaiian Health With Community‐Based Social and Biomedical Research.
Published in:
FASEB Journal, 2021, v. 35, p. N.PAG, doi. 10.1096/fasebj.2021.35.S1.05291
By:
- Kunihiro, Braden;
- Wells, Riley;
- McCracken, Trevor;
- Kim, Dong Yoon;
- Peres‐David, Rafael;
- Sultana, Răzvan;
- Maunakea, Alika
Publication type:
Article
Whole-exome sequencing reveals the mutational spectrum of testicular germ cell tumours.
Published in:
Nature Communications, 2015, v. 6, n. 1, p. 5973, doi. 10.1038/ncomms6973
By:
- Litchfield, Kevin;
- Summersgill, Brenda;
- Yost, Shawn;
- Sultana, Razvan;
- Labreche, Karim;
- Dudakia, Darshna;
- Renwick, Anthony;
- Seal, Sheila;
- Al-Saadi, Reem;
- Broderick, Peter;
- Turner, Nicholas C.;
- Houlston, Richard S.;
- Huddart, Robert;
- Shipley, Janet;
- Turnbull, Clare
Publication type:
Article
Multi-stage genome-wide association study identifies new susceptibility locus for testicular germ cell tumour on chromosome 3q25.
Published in:
Human Molecular Genetics, 2015, v. 24, n. 4, p. 1169, doi. 10.1093/hmg/ddu511
By:
- Litchfield, Kevin;
- Sultana, Razvan;
- Renwick, Anthony;
- Dudakia, Darshna;
- Seal, Sheila;
- Ramsay, Emma;
- Powell, Silvana;
- Elliott, Anna;
- Warren-Perry, Margaret;
- Eeles, Rosalind;
- Peto, Julian;
- Kote-Jarai, Zsofia;
- Muir, Kenneth;
- Nsengimana, Jeremie;
- Stratton, Michael R.;
- Easton, Douglas F.;
- Bishop, D. Timothy;
- Huddart, Robert A.;
- Rahman, Nazneen;
- Turnbull, Clare
Publication type:
Article
Porcine gene discovery by normalized cDNA-library sequencing and EST cluster assembly.
Published in:
Mammalian Genome, 2002, v. 13, n. 8, p. 475, doi. 10.1007/s00335-001-2072-4
By:
- Fahrenkrug, Scott C.;
- Smith, Timothy P. L.;
- Freking, Brad A.;
- Cho, Jennifer;
- White, Joseph;
- Vallet, Jeff;
- Wise, Tommy;
- Rohrer, Gary;
- Pertea, Geo;
- Sultana, Razvan;
- Quackenbush, John;
- Keele, John W.
Publication type:
Article
Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index.
Published in:
Mammalian Genome, 2002, v. 13, n. 7, p. 373, doi. 10.1007/s00335-001-2145-4
By:
- Sonstegard, Tad S.;
- Capuco, Anthony V.;
- White, Joseph;
- van Tassell, Curtis P.;
- Connor, Erin E.;
- Cho, Jennifer;
- Sultana, Razvan;
- Shade, Larry;
- Wray, James E.;
- Wells, Kevin D.;
- Quackenbush, John
Publication type:
Article
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets.
Published in:
Bioinformatics, 2003, v. 19, n. 5, p. 651, doi. 10.1093/bioinformatics/btg034
By:
- Pertea, Geo;
- Huang, Xiaoqiu;
- Liang, Feng;
- Antonescu, Valentin;
- Sultana, Razvan;
- Karamycheva, Svetlana;
- Lee, Yuandan;
- White, Joseph;
- Cheung, Foo;
- Parvizi, Babak;
- Tsai, Jennifer;
- Quackenbush, John
Publication type:
Article
nEASE: a method for gene ontology subclassification of high-throughput gene expression data.
Published in:
Bioinformatics, 2012, v. 28, n. 5, p. 726, doi. 10.1093/bioinformatics/bts011
By:
- Chittenden, Thomas W.;
- Howe, Eleanor A.;
- Taylor, Jennifer M.;
- Mar, Jessica C.;
- Aryee, Martin J.;
- Gómez, Harold;
- Sultana, Razvan;
- Braisted, John;
- Nair, Sarita J.;
- Quackenbush, John;
- Holmes, Chris
Publication type:
Article

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